Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1447 Trifolium pratense HOM05D002733 ORTHO05D003856 1.5e-86 322.8 154 100.0
TPR.G1412 Trifolium pratense HOM05D002733 ORTHO05D003856 2.3e-68 262.3 144 84.7
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 3.4e-59 231.9 141 78.7
TPR.G8024 Trifolium pratense HOM05D002733 ORTHO05D003856 2.3e-47 192.6 141 65.2
TPR.G22027 Trifolium pratense HOM05D002733 ORTHO05D003856 2.3e-44 182.6 111 78.4
TPR.G12039 Trifolium pratense HOM05D002733 ORTHO05D003856 6.4e-42 174.5 128 64.1
TPR.G1395 Trifolium pratense HOM05D002733 ORTHO05D003856 3.2e-41 172.2 133 62.4
Medtr3g013900 Medicago truncatula HOM05D002733 ORTHO05D003856 1.9e-38 162.9 126 63.5
Medtr3g013920 Medicago truncatula HOM05D002733 ORTHO05D003856 1.9e-38 162.9 126 63.5
Medtr0267s0030 Medicago truncatula HOM05D002733 ORTHO05D003856 7.3e-38 161.0 126 61.9
Medtr3g013820 Medicago truncatula HOM05D002733 ORTHO05D003856 7.3e-38 161.0 126 62.7
Medtr3g013810 Medicago truncatula HOM05D002733 ORTHO05D003856 9.5e-38 160.6 126 62.7
Hma1.2p1_1080F.1_g255020 Hydrangea macrophylla HOM05D002733 ORTHO05D003856 6.2e-29 131.3 119 51.3
RcHm_v2.0_Chr2g0120751 Rosa chinensis HOM05D002733 ORTHO05D003856 8.1e-29 131.0 136 48.5
Potri.001G397100 Populus trichocarpa HOM05D002733 ORTHO05D003856 2.6e-27 125.9 138 48.6
FAN19G2118 Fragaria x ananassa HOM05D002733 ORTHO05D003856 5.8e-27 124.8 124 50.0
FAN28G1642 Fragaria x ananassa HOM05D000949 ORTHO05D001276 5.8e-27 124.8 125 47.2
FAN23G1126 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.3e-26 123.6 125 46.4
FAN23G1485 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.3e-26 123.6 124 50.0
Lj1g0000886 Lotus japonicus HOM05D002733 ORTHO05D003856 1.7e-26 123.2 135 49.6
Prupe.7G223800 Prunus persica HOM05D002733 ORTHO05D003856 2.2e-26 122.9 132 48.5
FvH4_1g24261 Fragaria vesca HOM05D002733 ORTHO05D003856 2.9e-26 122.5 125 46.4
FAN26G1179 Fragaria x ananassa HOM05D002733 ORTHO05D003856 2.9e-26 122.5 125 46.4
Sabra16G0260100 Salix brachista HOM05D002733 ORTHO05D003856 2.9e-26 122.5 125 50.4
Prupe.7G223900 Prunus persica HOM05D002733 ORTHO05D003856 4.9e-26 121.7 132 48.5
Duzib213G1035 Durio zibethinus HOM05D002733 ORTHO05D003856 6.4e-26 121.3 149 44.3
Duzib213G0038 Durio zibethinus HOM05D002733 ORTHO05D003856 1.4e-25 120.2 150 46.0
Haze_23259 Corylus avellana HOM05D002733 ORTHO05D003856 2.4e-25 119.4 134 46.3
Lj3g0006952 Lotus japonicus HOM05D002733 ORTHO05D003856 3.2e-25 119.0 142 44.4
Cfa009897 Carpinus fangiana HOM05D002733 ORTHO05D003856 4.2e-25 118.6 134 46.3
FvH4_1g16231 Fragaria vesca HOM05D002733 ORTHO05D003856 4.2e-25 118.6 128 48.4
Phvul.005G031300 Phaseolus vulgaris HOM05D002733 ORTHO05D003856 4.2e-25 118.6 144 43.1
FvH4_5g06160 Fragaria vesca HOM05D002733 ORTHO05D003856 5.4e-25 118.2 147 44.9
FAN13G0375 Fragaria x ananassa HOM05D002733 ORTHO05D003856 5.4e-25 118.2 147 44.9
RcHm_v2.0_Chr7g0192641 Rosa chinensis HOM05D002733 ORTHO05D003856 7.1e-25 117.9 136 46.3
FAN18G0094 Fragaria x ananassa HOM05D002733 ORTHO05D003856 9.3e-25 117.5 147 44.9
Prupe.7G224000 Prunus persica HOM05D002733 ORTHO05D003856 1.6e-24 116.7 132 46.2
Thecc.07G171000 Theobroma cacao HOM05D002733 ORTHO05D003856 1.6e-24 116.7 134 46.3
VMungo1080G0152 Vigna mungo HOM05D002733 ORTHO05D003856 6.0e-24 114.8 106 50.0
VMungo1080G0686 Vigna mungo HOM05D002733 ORTHO05D003856 1.7e-23 113.2 106 48.1
MD02G1059300 Malus domestica HOM05D002733 ORTHO05D003856 2.3e-23 112.8 132 41.7
Duzib168G2229 Durio zibethinus HOM05D002733 ORTHO05D003856 5.1e-23 111.7 125 48.8
CiPaw.03G015000 Carya illinoinensis HOM05D002733 ORTHO05D003856 6.6e-23 111.3 126 45.2
Glyma.04G133200 Glycine max HOM05D002733 ORTHO05D003856 1.9e-22 109.8 115 47.0
Thecc.09G104200 Theobroma cacao HOM05D002733 ORTHO05D003856 1.9e-22 109.8 131 48.1
Cpa.g.sc81.85 Carica papaya HOM05D002733 ORTHO05D003856 2.5e-22 109.4 156 39.1
Manes.03G176000 Manihot esculenta HOM05D002733 ORTHO05D003856 2.5e-22 109.4 133 45.1
Manes.03G176200 Manihot esculenta HOM05D002733 ORTHO05D003856 2.5e-22 109.4 133 45.1
CiPaw.03G015300 Carya illinoinensis HOM05D002733 ORTHO05D003856 5.6e-22 108.2 126 45.2
CSS0001293 Camellia sinensis var. sinensis HOM05D002733 ORTHO05D003856 1.6e-21 106.7 125 43.2
Ciclev10010395m.g Citrus clementina HOM05D002733 ORTHO05D003856 2.1e-21 106.3 125 49.6
QL02p042807 Quercus lobata HOM05D002733 ORTHO05D003856 2.8e-21 105.9 157 42.0
QL02p042555 Quercus lobata HOM05D002733 ORTHO05D003856 4.8e-21 105.1 157 42.0
DCAR_003269 Daucus carota HOM05D002733 ORTHO05D003856 6.2e-21 104.8 131 43.5
Sed0017653 Sechium edule HOM05D002733 ORTHO05D003856 1.1e-20 104.0 113 46.9
MD15G1316300 Malus domestica HOM05D002733 ORTHO05D003856 1.4e-20 103.6 146 39.7
Sed0027145 Sechium edule HOM05D002733 ORTHO05D003856 1.4e-20 103.6 115 43.5
CiPaw.03G014700 Carya illinoinensis HOM05D002733 ORTHO05D003856 1.8e-20 103.2 127 40.2
COL.COLO4_32232 Corchorus olitorius HOM05D002733 ORTHO05D003856 1.8e-20 103.2 134 43.3
Gohir.D06G064250 Gossypium hirsutum HOM05D002733 ORTHO05D003856 9.0e-20 100.9 124 41.9
Gorai.010G075000 Gossypium raimondii HOM05D002733 ORTHO05D003856 9.0e-20 100.9 124 41.9
AL8G24310 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 1.2e-19 100.5 107 49.5
Haze_00185 Corylus avellana HOM05D002733 ORTHO05D003856 1.2e-19 100.5 122 43.4
Gohir.A06G065650 Gossypium hirsutum HOM05D002733 ORTHO05D003856 1.5e-19 100.1 124 41.9
Phvul.005G028900 Phaseolus vulgaris HOM05D002733 ORTHO05D003856 1.5e-19 100.1 106 43.4
CiPaw.03G014800 Carya illinoinensis HOM05D002733 ORTHO05D003856 2.0e-19 99.8 127 42.5
Ciclev10007038m.g Citrus clementina HOM05D002733 ORTHO05D003856 2.0e-19 99.8 134 38.8
Sed0022151 Sechium edule HOM05D002733 ORTHO05D003856 2.0e-19 99.8 120 39.2
Haze_00196 Corylus avellana HOM05D002733 ORTHO05D003856 3.4e-19 99.0 132 41.7
MD00G1107900 Malus domestica HOM05D002733 ORTHO05D003856 3.4e-19 99.0 140 38.6
COL.COLO4_34789 Corchorus olitorius HOM05D002733 ORTHO05D003856 5.8e-19 98.2 122 45.9
Peaxi162Scf00023g00136 Petunia axillaris HOM05D002733 ORTHO05D003856 9.9e-19 97.4 129 43.4
Eucgr.L02178 Eucalyptus grandis HOM05D002733 ORTHO05D003856 1.7e-18 96.7 139 39.6
Cfa016245 Carpinus fangiana HOM05D002733 ORTHO05D003856 2.9e-18 95.9 132 38.6
CsaV3_3G004840 Cucumis sativus L. HOM05D002733 ORTHO05D003856 2.9e-18 95.9 119 40.3
PGSC0003DMG400000368 Solanum tuberosum HOM05D002733 ORTHO05D003856 2.9e-18 95.9 129 45.7
Cfa016244 Carpinus fangiana HOM05D002733 ORTHO05D003856 8.4e-18 94.4 125 41.6
Solyc12g007300.1 Solanum lycopersicum HOM05D002733 ORTHO05D003856 8.4e-18 94.4 129 44.2
Sopen12g003260 Solanum pennellii HOM05D002733 ORTHO05D003856 8.4e-18 94.4 129 44.2
DCAR_028226 Daucus carota HOM05D002733 ORTHO05D003856 1.1e-17 94.0 129 37.2
Nitab4.5_0000316g0140 Nicotiana tabacum HOM05D002733 ORTHO05D003856 1.4e-17 93.6 128 43.0
Nitab4.5_0001888g0040 Nicotiana tabacum HOM05D002733 ORTHO05D003856 3.2e-17 92.4 128 43.0
CAN.G1774.3 Capsicum annuum HOM05D002733 ORTHO05D003856 4.2e-17 92.0 127 42.5
Sp4g22050 Schrenkiella parvula HOM05D002733 ORTHO05D003856 4.2e-17 92.0 124 42.7
Rhsim05G0042200 Rhododendron simsii HOM05D002733 ORTHO05D003856 9.3e-17 90.9 112 39.3
BolC3t15022H Brassica oleracea HOM05D002733 ORTHO05D003856 1.2e-16 90.5 128 42.2
Haze_00197 Corylus avellana HOM05D002733 ORTHO05D003856 1.6e-16 90.1 125 40.8
MELO3C004101.2 Cucumis melo HOM05D002733 ORTHO05D003856 1.6e-16 90.1 119 38.7
C03p26370 Brassica napus HOM05D002733 ORTHO05D003856 2.1e-16 89.7 128 42.2
BraA03t11459Z Brassica rapa HOM05D002733 ORTHO05D003856 2.7e-16 89.4 128 40.6
Sabra08G0161200 Salix brachista HOM05D002733 ORTHO05D003856 2.7e-16 89.4 98 45.9
Prupe.7G224100 Prunus persica HOM05D002733 ORTHO05D003856 3.5e-16 89.0 128 37.5
Sp4g22450 Schrenkiella parvula HOM05D002733 ORTHO05D003856 3.5e-16 89.0 108 42.6
AT4G03170 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 6.0e-16 88.2 107 43.9
A03p22270 Brassica napus HOM05D002733 ORTHO05D003856 6.0e-16 88.2 128 40.6
Sp5g18240 Schrenkiella parvula HOM05D002733 ORTHO05D003856 1.7e-15 86.7 108 40.7
DCAR_003268 Daucus carota HOM05D002733 ORTHO05D003856 5.1e-15 85.1 112 40.2
BcaB06g29131 Brassica carinata HOM05D002733 ORTHO05D003856 6.6e-15 84.7 108 41.7
PSO566G0305 Papaver somniferum HOM05D002733 ORTHO05D003856 1.9e-14 83.2 106 40.6
BcaB02g09048 Brassica carinata HOM05D002733 ORTHO05D003856 5.6e-14 81.6 130 36.9
BcaC01g05431 Brassica carinata HOM05D002733 ORTHO05D003856 9.6e-14 80.9 131 35.9
Actinidia20408 Actinidia chinensis HOM05D002733 ORTHO05D003856 1.3e-13 80.5 139 36.7
Aa31LG8G17170 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.3e-13 80.5 122 40.2
C03p26740 Brassica napus HOM05D002733 ORTHO05D003856 1.3e-13 80.5 131 35.9
BolC3t15059H Brassica oleracea HOM05D002733 ORTHO05D003856 1.3e-13 80.5 131 35.9
Eucgr.C01014 Eucalyptus grandis HOM05D002733 ORTHO05D003856 2.1e-13 79.7 122 35.2
MD02G1060300 Malus domestica HOM05D002733 ORTHO05D003856 2.8e-13 79.3 112 40.2
QL01p018928 Quercus lobata HOM05D002733 ORTHO05D003856 2.8e-13 79.3 109 43.1
Thhalv10017517m.g Eutrema salsugineum HOM05D002733 ORTHO05D003856 3.6e-13 79.0 109 41.3
A05p06330 Brassica napus HOM05D002733 ORTHO05D003856 6.2e-13 78.2 130 37.7
Aqoxy1G01498 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 1.4e-12 77.0 127 34.6
BcaC02g12127 Brassica carinata HOM05D002733 ORTHO05D003856 1.8e-12 76.6 130 37.7
C04p07280 Brassica napus HOM05D002733 ORTHO05D003856 1.8e-12 76.6 130 37.7
BolC4t22351H Brassica oleracea HOM05D002733 ORTHO05D003856 1.8e-12 76.6 130 37.7
QL01p018935 Quercus lobata HOM05D002733 ORTHO05D003856 1.8e-12 76.6 110 41.8
Actinidia09441 Actinidia chinensis HOM05D002733 ORTHO05D003856 2.4e-12 76.3 139 32.4
BraA05t19601Z Brassica rapa HOM05D002733 ORTHO05D003856 3.1e-12 75.9 130 38.5
CiPaw.03G015100 Carya illinoinensis HOM05D002733 ORTHO05D003856 3.1e-12 75.9 94 41.5
Aa31LG3G6410 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.2e-11 73.9 102 43.1
Aa31LG7G1600 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.0e-11 73.2 118 37.3
CARHR135120 Cardamine hirsuta HOM05D002733 ORTHO05D003856 2.6e-11 72.8 109 37.6
FAN19G0693 Fragaria x ananassa HOM05D002733 ORTHO05D003856 2.6e-11 72.8 67 47.8
Aa31LG8G11380 Aethionema arabicum HOM05D002733 ORTHO05D003856 7.6e-11 71.2 132 36.4
Aa31LG8G17140 Aethionema arabicum HOM05D002733 ORTHO05D003856 7.6e-11 71.2 139 33.8
DCAR_014131 Daucus carota HOM05D002733 ORTHO05D003856 7.6e-11 71.2 125 34.4
COL.COLO4_00094 Corchorus olitorius HOM05D002733 ORTHO05D003856 9.9e-11 70.9 76 51.3
Aa31LG8G17220 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.7e-10 70.1 122 34.4
Aa31LG8G17210 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.9e-10 69.3 122 36.9
AL4G37790 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 2.9e-10 69.3 128 35.9
Thhalv10003384m.g Eutrema salsugineum HOM05D002733 ORTHO05D003856 4.9e-10 68.6 105 38.1
Peaxi162Scf00665g00139 Petunia axillaris HOM05D002733 ORTHO05D003856 4.9e-10 68.6 137 33.6
Aa31LG8G17200 Aethionema arabicum HOM05D002733 ORTHO05D003856 8.4e-10 67.8 144 31.9
QL01p018939 Quercus lobata HOM05D002733 ORTHO05D003856 1.1e-09 67.4 128 38.3
AT4G03160 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 3.2e-09 65.9 114 35.1
Aa31LG7G1520 Aethionema arabicum HOM05D002733 ORTHO05D003856 5.5e-09 65.1 103 35.0
Aa31LG8G17150 Aethionema arabicum HOM05D002733 ORTHO05D003856 5.5e-09 65.1 116 36.2
Dinv41650 Davidia involucrata HOM05D002733 ORTHO05D003856 1.2e-08 63.9 135 35.6
Peaxi162Scf00665g00148 Petunia axillaris HOM05D002733 ORTHO05D003856 1.2e-08 63.9 135 35.6
Phvul.004G029250 Phaseolus vulgaris HOM05D022012 ORTHO05D003856 1.2e-08 63.9 97 41.2
Peaxi162Scf00665g00126 Petunia axillaris HOM05D002733 ORTHO05D003856 1.6e-08 63.5 106 36.8
ATR0730G071 Amborella trichopoda HOM05D020218 ORTHO05D017274 2.7e-08 62.8 111 32.4
Aqoxy2G03580 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 7.9e-08 61.2 70 41.4
Sp1g37530 Schrenkiella parvula HOM05D000466 ORTHO05D000331 7.9e-08 61.2 92 33.7
Aa31LG8G17190 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.3e-07 60.5 104 34.6
PSO782G1409 Papaver somniferum HOM05D002733 ORTHO05D003856 1.8e-07 60.1 103 37.9
Phvul.004G169400 Phaseolus vulgaris HOM05D022012 ORTHO05D003856 1.8e-07 60.1 90 42.2
MBI18_g14086_MAGBIO Magnolia biondii HOM05D018115 ORTHO05D017274 3.9e-07 58.9 113 33.6
FAN28G2808 Fragaria x ananassa HOM05D002733 ORTHO05D003856 8.7e-07 57.8 70 44.3
Aa31LG7G1590 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.1e-06 57.4 105 37.1
VMungo0464G0934 Vigna mungo HOM05D022012 ORTHO05D003856 1.1e-06 57.4 113 38.1
Aa31LG7G1550 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.9e-06 56.6 129 30.2
Dinv07992 Davidia involucrata HOM05D002733 ORTHO05D003856 1.9e-06 56.6 101 38.6
CDE02G0413 Ceratophyllum demersum HOM05D040791 ORTHO05D013425 2.5e-06 56.2 80 37.5
Aa31LG7G1580 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.3e-06 55.8 91 38.5
BolC3t19780H Brassica oleracea HOM05D010480 ORTHO05D003856 5.6e-06 55.1 126 31.7
Aa31LG7G1540 Aethionema arabicum HOM05D002733 ORTHO05D003856 9.6e-06 54.3 105 33.3


User provided reference genes

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