Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1999.9 1016 100.0
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1711.0 1028 85.9
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1708.7 1028 85.9
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1597.0 1055 80.4
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1527.3 1029 77.7
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1482.6 1029 75.2
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1414.8 1029 72.3
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1402.5 1024 72.2
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1399.0 1030 71.5
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1395.6 1030 71.5
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1392.5 1029 71.4
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1380.9 1031 71.4
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 0.0e+00 1347.0 1029 68.5
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1339.7 1030 68.7
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 0.0e+00 1330.9 1030 67.3
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 0.0e+00 1330.5 1032 67.2
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 0.0e+00 1326.6 1031 66.5
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 0.0e+00 1326.2 1027 67.1
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1323.9 1100 64.9
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1322.4 988 71.0
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 0.0e+00 1319.7 1031 66.7
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 0.0e+00 1314.3 1026 66.5
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1313.5 1030 69.3
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 0.0e+00 1312.7 1032 66.3
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1306.6 1026 65.8
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1304.3 1055 68.0
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 0.0e+00 1303.9 1026 65.6
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1300.0 1026 65.3
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 0.0e+00 1299.3 1041 66.0
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1298.1 1037 65.0
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1297.3 1037 64.9
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1296.2 1037 64.8
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1293.9 1031 65.1
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 0.0e+00 1292.7 1037 65.2
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 0.0e+00 1291.6 1030 65.2
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 0.0e+00 1290.8 1027 65.4
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1286.9 1051 63.7
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1285.8 1051 63.6
Cfa017894 Carpinus fangiana HOM05D001026 ORTHO05D005232 0.0e+00 1281.2 985 67.7
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1280.0 1027 65.6
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1279.2 1062 63.1
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1276.2 1047 63.6
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 0.0e+00 1275.0 1030 64.6
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 0.0e+00 1275.0 1028 64.3
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 0.0e+00 1271.9 1037 64.7
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 0.0e+00 1268.8 1026 64.2
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 0.0e+00 1268.1 1033 64.2
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1265.8 1024 66.5
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 0.0e+00 1265.8 1043 64.0
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 0.0e+00 1263.4 1031 64.4
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1261.5 1025 66.3
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 0.0e+00 1260.4 1037 64.6
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 0.0e+00 1258.8 1034 64.0
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 0.0e+00 1257.7 1037 63.4
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1257.3 1030 65.1
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1255.7 1033 66.6
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 0.0e+00 1255.4 1037 63.0
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 0.0e+00 1253.4 1036 64.3
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 0.0e+00 1252.3 1030 63.9
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 0.0e+00 1250.0 1034 63.0
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1249.6 1164 59.4
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1247.3 1036 62.7
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 0.0e+00 1247.3 1036 62.9
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1245.7 1036 62.8
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 0.0e+00 1245.3 1036 62.8
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 0.0e+00 1244.6 1033 62.1
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 0.0e+00 1242.3 1034 63.2
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1241.1 1036 62.7
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1239.9 1036 62.6
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 0.0e+00 1239.6 1029 63.6
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1238.4 1030 63.2
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1237.6 1030 63.1
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 0.0e+00 1235.7 1030 63.3
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 0.0e+00 1235.7 1033 62.7
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 0.0e+00 1232.6 1070 61.4
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 0.0e+00 1232.2 1033 61.8
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1231.9 1067 61.7
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1230.3 1197 57.5
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1230.3 1035 63.0
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 0.0e+00 1227.6 1031 62.9
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1223.8 1030 62.8
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 0.0e+00 1216.4 999 64.6
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 0.0e+00 1211.4 1035 62.1
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 0.0e+00 1210.7 1034 62.3
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1209.5 1048 61.5
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1209.1 1004 63.5
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 0.0e+00 1207.2 1031 61.8
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 0.0e+00 1205.7 957 65.8
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 0.0e+00 1203.7 1062 60.7
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 0.0e+00 1173.7 1037 59.3
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 0.0e+00 1164.1 1030 60.0
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1151.3 1026 59.6
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 0.0e+00 1149.0 1035 60.3
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1148.7 1023 59.5
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 0.0e+00 1147.9 1029 60.3
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1147.5 1032 59.6
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1146.7 1036 58.4
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 0.0e+00 1144.8 1130 56.2
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 0.0e+00 1128.6 994 61.0
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1125.5 1004 60.6
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1122.5 1036 58.6
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1115.9 1028 58.4
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1113.2 989 60.6
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1106.3 1036 58.0
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1102.8 1041 57.4
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1099.7 1023 57.9
ECA232G4443 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1094.7 955 61.4
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1077.4 931 61.8
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 5.8e-309 1064.3 1027 56.1
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 1.0e-305 1053.5 1033 56.8
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 4.3e-304 1048.1 1068 55.0
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 6.9e-302 1040.8 1030 54.4
CSS0035277 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D005232 4.5e-301 1038.1 873 63.1
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 7.9e-298 1027.3 1031 56.0
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 1.8e-294 1016.1 1038 53.8
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 1.1e-288 996.9 992 55.4
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 8.2e-287 990.7 957 55.6
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 1.4e-286 989.9 909 59.5
Gohir.A06G033300 Gossypium hirsutum HOM05D001026 ORTHO05D005232 5.7e-280 968.0 872 60.0
MD15G1376700 Malus domestica HOM05D001026 ORTHO05D005232 2.0e-272 943.0 818 61.2
CDE10G1069 Ceratophyllum demersum HOM05D001026 ORTHO05D005232 1.2e-261 907.1 976 53.5
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 2.8e-242 842.8 1040 46.8
Zm00001eb286080 Zea mays HOM05D001026 ORTHO05D005232 1.8e-241 840.1 883 53.1
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 6.3e-239 831.6 1055 45.9
Hund26991 Selenicereus undatus HOM05D001026 ORTHO05D005232 1.2e-224 784.3 784 56.1
SMO356G0157 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 5.8e-224 781.9 990 45.1
Glyma.20G056500 Glycine max HOM05D001026 ORTHO05D005232 7.5e-216 755.0 648 65.4
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 1.7e-212 743.8 1042 42.7
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 1.7e-207 727.2 1054 42.0
Haze_18258 Corylus avellana HOM05D001026 ORTHO05D005232 1.0e-204 718.0 731 56.2
Dinv05859 Davidia involucrata HOM05D001026 ORTHO05D005232 1.5e-203 714.1 637 59.8
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 7.1e-198 695.3 1238 38.6
SMO134G0184 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 1.8e-193 680.6 903 42.0
Peaxi162Scf00571g00528 Petunia axillaris HOM05D001026 ORTHO05D005232 1.3e-186 657.9 632 56.6
Glyma.20G056600 Glycine max HOM05D001026 ORTHO05D005232 9.3e-182 641.7 402 79.1
Psat0s5307g0040 Pisum sativum HOM05D001026 ORTHO05D005232 3.8e-159 566.6 444 69.1
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 5.5e-158 562.8 454 68.3
Dinv05858 Davidia involucrata HOM05D001026 ORTHO05D005232 7.9e-157 558.9 366 75.1
Manes.18G025208 Manihot esculenta HOM05D001026 ORTHO05D005232 2.3e-148 530.8 400 69.2
SEGI_18178 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 2.9e-127 460.7 562 48.2
SHI20583 Sapria himalayana HOM05D001026 ORTHO05D005232 9.2e-113 412.5 539 45.5
arahy.Tifrunner.gnm1.ann1.WH8Y2A Arachis hypogaea HOM05D001026 ORTHO05D005232 3.7e-106 390.6 258 76.4
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 2.5e-102 377.9 273 72.5
Haze_18259 Corylus avellana HOM05D001026 ORTHO05D005232 7.3e-102 376.3 238 78.6
MD15G1376600 Malus domestica HOM05D001026 ORTHO05D005232 3.8e-90 337.4 201 78.6
Psat1g107360 Pisum sativum HOM05D001026 ORTHO05D005232 6.6e-87 326.6 236 73.7
SHI20581 Sapria himalayana HOM05D001026 ORTHO05D005232 1.5e-83 315.5 240 65.4
Cre10.g457150 Chlamydomonas reinhardtii HOM05D001026 ORTHO05D005232 8.1e-77 293.1 845 27.9
Haze_18261 Corylus avellana HOM05D001026 ORTHO05D005232 7.6e-67 260.0 172 71.5
Hund26990 Selenicereus undatus HOM05D001026 ORTHO05D005232 3.2e-65 254.6 160 75.0
Psat0s2339g0080 Pisum sativum HOM05D001026 ORTHO05D005232 4.8e-61 240.7 312 53.2
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 3.8e-58 231.1 274 53.6
Psat7g123360 Pisum sativum HOM05D002169 ORTHO05D006577 1.4e-57 229.2 173 63.0
Psat3g007920 Pisum sativum HOM05D001026 ORTHO05D005232 2.0e-51 208.8 147 72.8
QL02p059881 Quercus lobata HOM05D001026 ORTHO05D005232 1.2e-48 199.5 148 74.3
PRCOL_00002948 Prasinoderma coloniale HOM05D001026 ORTHO05D005232 1.1e-46 193.0 511 30.9
SHI20572 Sapria himalayana HOM05D001026 ORTHO05D005232 1.6e-40 172.6 124 64.5
SEGI_27036 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 7.4e-38 163.7 90 75.6
Psat0s3521g0080 Pisum sativum HOM05D000555 ORTHO05D001906 1.3e-37 162.9 134 64.2
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 4.1e-36 157.9 204 46.6
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 2.5e-33 148.7 122 65.6
SEGI_36321 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 4.5e-27 127.9 89 64.0
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 1.3e-26 126.3 106 67.9
HPP92_016951 Vanilla planifolia HOM05D001026 ORTHO05D005232 1.6e-24 119.4 86 62.8
Psat0s1135g0080 Pisum sativum HOM05D001026 ORTHO05D005232 1.4e-23 116.3 96 59.4
Psat4g159480 Pisum sativum HOM05D002169 ORTHO05D006577 1.6e-16 92.8 77 55.8
CDE10G0833 Ceratophyllum demersum HOM05D001026 ORTHO05D023993 2.3e-15 89.0 80 58.8
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 2.0e-14 85.9 82 59.8
SHI20575 Sapria himalayana HOM05D001026 ORTHO05D005232 1.6e-11 76.3 46 78.3
AagrBONN_evm.TU.Sc2ySwM_368.2118 Anthoceros agrestis HOM05D001026 ORTHO05D005232 3.5e-11 75.1 50 70.0
Psat3g007840 Pisum sativum HOM05D001026 ORTHO05D005232 1.3e-10 73.2 65 53.8
BcaC05g26968 Brassica carinata HOM05D001026 ORTHO05D023993 1.1e-09 70.1 77 50.6
C05p28240 Brassica napus HOM05D001026 ORTHO05D023993 1.1e-09 70.1 77 50.6
BolC5t31548H Brassica oleracea HOM05D001026 ORTHO05D023993 1.1e-09 70.1 77 50.6


User provided reference genes

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