Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G14446 Trifolium pratense HOM05D002897 ORTHO05D008718 7.9e-138 493.8 255 100.0
Medtr5g085980 Medicago truncatula HOM05D002897 ORTHO05D008718 9.7e-112 407.1 250 84.4
Psat4g114440 Pisum sativum HOM05D002897 ORTHO05D008718 1.7e-108 396.4 250 81.2
Ca_06120_v3 Cicer arietinum L. HOM05D002897 ORTHO05D008718 1.4e-107 393.3 253 81.8
VMungo0647G1784 Vigna mungo HOM05D002897 ORTHO05D008718 9.4e-99 364.0 253 75.1
Phvul.008G211400 Phaseolus vulgaris HOM05D002897 ORTHO05D008718 3.9e-97 358.6 258 73.3
Glyma.14G046500 Glycine max HOM05D002897 ORTHO05D008718 8.8e-97 357.5 251 75.3
Glyma.02G270500 Glycine max HOM05D002897 ORTHO05D008718 3.3e-96 355.5 252 74.2
arahy.Tifrunner.gnm1.ann1.QRVI7E Arachis hypogaea HOM05D002897 ORTHO05D008718 3.2e-91 339.0 266 69.2
arahy.Tifrunner.gnm1.ann1.YEZ88R Arachis hypogaea HOM05D002897 ORTHO05D008718 9.4e-91 337.4 266 68.4
Lalb_Chr04g0249891 Lupinus albus HOM05D002897 ORTHO05D008718 9.4e-91 337.4 255 69.0
LjContig00564g0002899 Lotus japonicus HOM05D002897 ORTHO05D008718 1.7e-87 326.6 257 68.1
Solyc07g049200.4 Solanum lycopersicum HOM05D002897 ORTHO05D008718 5.2e-81 305.1 255 60.8
CiPaw.03G157200 Carya illinoinensis HOM05D002897 ORTHO05D008718 1.5e-80 303.5 258 62.4
PGSC0003DMG400000696 Solanum tuberosum HOM05D002897 ORTHO05D008718 1.7e-79 300.1 255 60.0
Sopen07g025210 Solanum pennellii HOM05D002897 ORTHO05D008718 2.8e-79 299.3 255 60.8
GSVIVG01030483001 Vitis vinifera HOM05D002897 ORTHO05D008718 1.4e-78 297.0 254 57.5
Cfa014332 Carpinus fangiana HOM05D002897 ORTHO05D008718 5.4e-78 295.0 256 61.7
Duzib138G1172 Durio zibethinus HOM05D002897 ORTHO05D008718 1.2e-77 293.9 250 62.4
Peaxi162Scf00921g00023 Petunia axillaris HOM05D002897 ORTHO05D008718 2.0e-77 293.1 257 60.3
Thecc.01G180000 Theobroma cacao HOM05D002897 ORTHO05D008718 2.0e-77 293.1 255 60.4
TAR624G0001 Trochodendron aralioides HOM05D002897 ORTHO05D008718 2.0e-77 293.1 258 60.5
Sed0013072 Sechium edule HOM05D002897 ORTHO05D008718 5.9e-77 291.6 253 60.9
MELO3C018838.2 Cucumis melo HOM05D002897 ORTHO05D008718 7.7e-77 291.2 255 59.6
Nn1g07262 Nelumbo nucifera HOM05D002897 ORTHO05D008718 2.9e-76 289.3 256 59.4
Gorai.007G171100 Gossypium raimondii HOM05D002897 ORTHO05D008718 3.8e-76 288.9 255 60.4
TWI18G1283 Tripterygium wilfordii HOM05D002897 ORTHO05D008718 5.0e-76 288.5 257 58.4
ClCG02G002140 Citrullus lanatus HOM05D002897 ORTHO05D008718 6.6e-76 288.1 255 59.6
Gohir.D11G160500 Gossypium hirsutum HOM05D002897 ORTHO05D008718 6.6e-76 288.1 255 60.4
Manes.13G067751 Manihot esculenta HOM05D002897 ORTHO05D008718 6.6e-76 288.1 256 60.2
RcHm_v2.0_Chr2g0158471 Rosa chinensis HOM05D002897 ORTHO05D008718 6.6e-76 288.1 255 59.6
Cpa.g.sc132.3 Carica papaya HOM05D002897 ORTHO05D008718 8.6e-76 287.7 255 58.8
Manes.13G067750 Manihot esculenta HOM05D002897 ORTHO05D008718 8.6e-76 287.7 256 60.2
CsaV3_7G003360 Cucumis sativus L. HOM05D002897 ORTHO05D008718 1.1e-75 287.3 255 58.8
QL08p031170 Quercus lobata HOM05D002897 ORTHO05D008718 1.9e-75 286.6 259 59.5
Potri.014G156700 Populus trichocarpa HOM05D002897 ORTHO05D008718 2.5e-75 286.2 257 59.9
Nitab4.5_0012091g0010 Nicotiana tabacum HOM05D002897 ORTHO05D008718 3.3e-75 285.8 252 60.7
Sabra14G0118500 Salix brachista HOM05D002897 ORTHO05D008718 7.2e-75 284.6 255 59.2
FAN05G4893 Fragaria x ananassa HOM05D002897 ORTHO05D008718 1.2e-74 283.9 255 59.2
Haze_12787 Corylus avellana HOM05D002897 ORTHO05D008718 1.6e-74 283.5 276 56.5
Thhalv10008572m.g Eutrema salsugineum HOM05D002897 ORTHO05D008718 1.6e-74 283.5 253 56.9
AT1G05060 Arabidopsis thaliana HOM05D002897 ORTHO05D008718 3.6e-74 282.3 255 58.0
Gohir.A11G153700 Gossypium hirsutum HOM05D002897 ORTHO05D008718 4.7e-74 282.0 254 58.7
FAN02G2770 Fragaria x ananassa HOM05D002897 ORTHO05D008718 6.1e-74 281.6 255 58.4
THA.LOC104826141 Tarenaya hassleriana HOM05D002897 ORTHO05D008718 6.1e-74 281.6 252 59.5
Carub.0001s0433 Capsella rubella HOM05D002897 ORTHO05D008718 1.0e-73 280.8 254 57.5
AL1G14810 Arabidopsis lyrata HOM05D002897 ORTHO05D008718 1.8e-73 280.0 255 57.6
FvH4_6g42620 Fragaria vesca HOM05D002897 ORTHO05D008718 1.8e-73 280.0 255 58.0
CSS0022002 Camellia sinensis var. sinensis HOM05D002897 ORTHO05D008718 3.0e-73 279.3 252 59.5
BcaB07g32946 Brassica carinata HOM05D002897 ORTHO05D008718 4.0e-73 278.9 253 56.5
Sp1g03930 Schrenkiella parvula HOM05D002897 ORTHO05D008718 5.2e-73 278.5 253 56.9
Nitab4.5_0000482g0070 Nicotiana tabacum HOM05D002897 ORTHO05D008718 6.8e-73 278.1 257 59.9
Ciclev10016301m.g Citrus clementina HOM05D002897 ORTHO05D008718 8.9e-73 277.7 263 58.6
Actinidia09731 Actinidia chinensis HOM05D002897 ORTHO05D008718 1.2e-72 277.3 252 58.7
Prupe.3G212700 Prunus persica HOM05D002897 ORTHO05D008718 1.2e-72 277.3 259 58.7
BolC5t31920H Brassica oleracea HOM05D002897 ORTHO05D008718 2.6e-72 276.2 253 55.7
Hma1.2p1_2044F.1_g312350 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 2.6e-72 276.2 258 55.4
BcaC05g27288 Brassica carinata HOM05D002897 ORTHO05D008718 4.4e-72 275.4 253 55.7
BraA09t38920Z Brassica rapa HOM05D002897 ORTHO05D008718 1.7e-71 273.5 253 56.1
Sc06g0009610 Simmondsia chinensis HOM05D002897 ORTHO05D008718 6.3e-71 271.6 259 56.0
vmacro12177 Vaccinium macrocarpon HOM05D002897 ORTHO05D008718 6.3e-71 271.6 254 58.7
Atru.chr6.3235 Acer truncatum HOM05D002897 ORTHO05D008718 5.4e-70 268.5 255 56.5
Rhsim06G0166000 Rhododendron simsii HOM05D002897 ORTHO05D008718 5.4e-70 268.5 267 58.1
SalBow1G3579 Salvia bowleyana HOM05D002897 ORTHO05D008718 5.4e-70 268.5 260 55.8
AUR62035641 Chenopodium quinoa HOM05D002897 ORTHO05D008718 7.0e-70 268.1 256 55.5
Aqoxy1G03476 Aquilegia oxysepala HOM05D002897 ORTHO05D008718 2.7e-69 266.2 259 56.8
CARHR004510 Cardamine hirsuta HOM05D002897 ORTHO05D008718 5.9e-69 265.0 255 54.9
SalBow1G2496 Salvia bowleyana HOM05D002897 ORTHO05D008718 1.3e-68 263.8 259 54.8
Migut.H01234 Erythranthe guttata HOM05D002897 ORTHO05D008718 3.9e-68 262.3 267 53.6
ECA234G1553 Erigeron canadensis HOM05D002897 ORTHO05D008718 5.0e-68 261.9 259 55.6
C05p31940 Brassica napus HOM05D002897 ORTHO05D008718 6.6e-68 261.5 278 50.4
MSTRG.14141 Avicennia marina HOM05D002897 ORTHO05D008718 1.1e-67 260.8 260 53.8
Lsat_1_v5_gn_5_123640 Lactuca sativa HOM05D002897 ORTHO05D008718 1.1e-67 260.8 259 53.3
Oeu051891.2 Olea europaea HOM05D002897 ORTHO05D008718 1.1e-67 260.8 283 52.7
SGA_v2.0_scaffold49G18345 Striga asiatica HOM05D002897 ORTHO05D008718 1.1e-67 260.8 260 54.6
AUR62017163 Chenopodium quinoa HOM05D002897 ORTHO05D008718 1.9e-67 260.0 248 55.2
A09p33710 Brassica napus HOM05D002897 ORTHO05D008718 2.5e-67 259.6 278 51.1
Dinv39736 Davidia involucrata HOM05D002897 ORTHO05D008718 3.3e-67 259.2 256 56.6
HanXRQChr12g0373611 Helianthus annuus HOM05D002897 ORTHO05D008718 3.6e-66 255.8 256 53.5
EL10Ac4g07512 Beta vulgaris HOM05D002897 ORTHO05D008718 5.2e-65 251.9 264 53.0
Eucgr.A01101 Eucalyptus grandis HOM05D002897 ORTHO05D008718 1.2e-64 250.8 265 51.7
Cc05_g03270 Coffea canephora HOM05D002897 ORTHO05D008718 1.5e-64 250.4 256 53.5
Lj8C128G4 Lonicera japonica HOM05D002897 ORTHO05D008718 4.4e-64 248.8 257 54.1
CDE07G0516 Ceratophyllum demersum HOM05D002897 ORTHO05D008718 2.9e-63 246.1 259 51.4
PSO210G2604 Papaver somniferum HOM05D002897 ORTHO05D008718 4.6e-61 238.8 257 50.2
Hma1.2p1_1986F.1_g310090 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 6.0e-61 238.4 205 56.6
Aqoxy1G03469 Aquilegia oxysepala HOM05D002897 ORTHO05D008718 8.6e-60 234.6 258 49.2
MD17G1102200 Malus domestica HOM05D002897 ORTHO05D008718 8.6e-60 234.6 211 58.3
MBI19_g24999_MAGBIO Magnolia biondii HOM05D002897 ORTHO05D008718 6.2e-58 228.4 255 50.2
Os06g0239700 Oryza sativa ssp. japonica HOM05D002897 ORTHO05D008718 1.8e-57 226.9 252 48.4
Zm00001eb280010 Zea mays HOM05D002897 ORTHO05D008718 6.8e-57 224.9 253 51.0
Aa31LG1G19710 Aethionema arabicum HOM05D002897 ORTHO05D008718 1.2e-56 224.2 300 44.0
Hma1.2p1_2044F.1_g312360 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 7.8e-53 211.5 195 58.5
DCAR_012931 Daucus carota HOM05D002897 ORTHO05D008718 1.2e-50 204.1 255 48.2
FAN14G2576 Fragaria x ananassa HOM05D002897 ORTHO05D008718 4.7e-50 202.2 255 48.6
HPP92_017354 Vanilla planifolia HOM05D002897 ORTHO05D008718 1.6e-45 187.2 248 42.7
COL.COLO4_21853 Corchorus olitorius HOM05D002897 ORTHO05D008718 7.3e-43 178.3 157 62.4
unitig_21.g21003 Utricularia gibba HOM05D002897 ORTHO05D008718 6.8e-41 171.8 159 55.3
SEGI_41028 Sequoiadendron giganteum HOM05D002897 ORTHO05D008718 5.4e-38 162.2 246 39.4
CSS0034853 Camellia sinensis var. sinensis HOM05D002897 ORTHO05D008718 6.4e-31 138.7 206 43.2
AagrBONN_evm.TU.Sc2ySwM_117.2821 Anthoceros agrestis HOM05D002897 ORTHO05D008718 1.1e-30 137.9 230 39.6
Pp3c23_20260 Physcomitrium patens HOM05D002897 ORTHO05D008718 2.3e-28 130.2 270 35.9
ATR0059G011 Amborella trichopoda HOM05D002897 ORTHO05D008718 5.6e-27 125.6 142 51.4
MD06G1049400 Malus domestica HOM05D002897 ORTHO05D008718 5.6e-19 99.0 129 49.6
ATR0059G040 Amborella trichopoda HOM05D002897 ORTHO05D008718 3.8e-15 86.3 97 44.3
CANSAT64G1786 Cannabis sativa HOM05D002897 ORTHO05D008718 3.0e-12 76.6 58 60.3
SMO290G0011 Selaginella moellendorffii HOM05D013342 ORTHO05D008718 3.0e-12 76.6 222 28.4
SMO356G0703 Selaginella moellendorffii HOM05D013342 ORTHO05D008718 3.9e-12 76.3 222 28.8
Aa31sc72G10 Aethionema arabicum HOM05D002897 ORTHO05D008718 7.6e-08 62.0 123 35.8
BolC6t39233H Brassica oleracea HOM05D002897 ORTHO05D008718 6.5e-07 58.9 45 53.3


User provided reference genes

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