Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G14337 Trifolium pratense HOM05D006594 ORTHO05D008383 2.3e-255 885.2 477 100.0
Medtr1g100767 Medicago truncatula HOM05D006594 ORTHO05D008383 2.0e-195 686.0 436 81.4
Ca_10784_v3 Cicer arietinum L. HOM05D006594 ORTHO05D008383 5.7e-190 667.9 443 79.5
Psat6g200680 Pisum sativum HOM05D006594 ORTHO05D008383 1.3e-186 656.8 443 78.8
LjContig00238g0014067 Lotus japonicus HOM05D006594 ORTHO05D008383 4.0e-167 592.0 443 70.9
Phvul.007G067900 Phaseolus vulgaris HOM05D006594 ORTHO05D008383 1.1e-156 557.4 447 66.2
Glyma.10G237700 Glycine max HOM05D006594 ORTHO05D008383 4.1e-156 555.4 452 66.6
Glyma.20G156900 Glycine max HOM05D006594 ORTHO05D008383 4.6e-155 552.0 449 65.9
Lalb_Chr06g0161051 Lupinus albus HOM05D006594 ORTHO05D008383 2.6e-150 536.2 443 65.2
arahy.Tifrunner.gnm1.ann1.GIF0V2 Arachis hypogaea HOM05D006594 ORTHO05D008383 2.3e-122 443.4 378 62.2
arahy.Tifrunner.gnm1.ann1.MGJ2V1 Arachis hypogaea HOM05D006594 ORTHO05D008383 1.9e-121 440.3 414 57.7
Cfa008301 Carpinus fangiana HOM05D006594 ORTHO05D008383 2.1e-120 436.8 453 55.4
CiPaw.03G104400 Carya illinoinensis HOM05D006594 ORTHO05D008383 2.1e-115 420.2 451 55.0
Ciclev10004900m.g Citrus clementina HOM05D006594 ORTHO05D008383 1.9e-113 413.7 455 50.1
Prupe.2G292200 Prunus persica HOM05D006594 ORTHO05D008383 2.5e-113 413.3 443 53.3
MD07G1266600 Malus domestica HOM05D006594 ORTHO05D008383 1.3e-112 411.0 450 52.2
RcHm_v2.0_Chr1g0376971 Rosa chinensis HOM05D006594 ORTHO05D008383 1.3e-112 411.0 442 52.5
QL09p014600 Quercus lobata HOM05D006594 ORTHO05D008383 1.6e-112 410.6 449 53.5
Potri.015G140900 Populus trichocarpa HOM05D006594 ORTHO05D008383 2.0e-110 403.7 458 50.4
Duzib205G1849 Durio zibethinus HOM05D006594 ORTHO05D008383 1.7e-109 400.6 453 50.1
Manes.14G027600 Manihot esculenta HOM05D006594 ORTHO05D008383 2.4e-108 396.7 457 50.1
Sabra15G0151500 Salix brachista HOM05D006594 ORTHO05D008383 3.2e-108 396.4 450 49.6
TWI23G0502 Tripterygium wilfordii HOM05D006594 ORTHO05D008383 7.1e-108 395.2 452 49.6
CSS0002088 Camellia sinensis var. sinensis HOM05D006594 ORTHO05D008383 1.0e-106 391.3 445 50.3
FAN06G4553 Fragaria x ananassa HOM05D006594 ORTHO05D008383 1.0e-106 391.3 446 50.4
COL.COLO4_14285 Corchorus olitorius HOM05D006594 ORTHO05D008383 1.3e-106 391.0 451 48.6
FAN10G1161 Fragaria x ananassa HOM05D006594 ORTHO05D008383 1.8e-106 390.6 444 50.2
CSS0024482 Camellia sinensis var. sinensis HOM05D006594 ORTHO05D008383 5.1e-106 389.0 445 50.1
FAN06G0009 Fragaria x ananassa HOM05D006594 ORTHO05D008383 1.9e-105 387.1 446 50.2
PGR142G0281 Punica granatum HOM05D006594 ORTHO05D008383 7.4e-105 385.2 441 49.2
GSVIVG01010594001 Vitis vinifera HOM05D006594 ORTHO05D008383 9.6e-105 384.8 405 52.1
THA.LOC104825095 Tarenaya hassleriana HOM05D006594 ORTHO05D008383 2.1e-104 383.6 443 50.1
MELO3C006892.2 Cucumis melo HOM05D006594 ORTHO05D008383 3.1e-103 379.8 451 47.0
ClCG05G007930 Citrullus lanatus HOM05D006594 ORTHO05D008383 5.3e-103 379.0 449 46.5
FAN01G0792 Fragaria x ananassa HOM05D006594 ORTHO05D008383 6.9e-103 378.6 437 49.7
Cc02_g03190 Coffea canephora HOM05D006594 ORTHO05D008383 9.0e-103 378.3 446 48.7
CsaV3_3G016960 Cucumis sativus L. HOM05D006594 ORTHO05D008383 9.0e-103 378.3 452 46.5
Sp6g14430 Schrenkiella parvula HOM05D006594 ORTHO05D008383 9.0e-103 378.3 445 49.0
DCAR_009355 Daucus carota HOM05D006594 ORTHO05D008383 1.5e-102 377.5 440 49.3
Eucgr.K00239 Eucalyptus grandis HOM05D006594 ORTHO05D008383 1.5e-102 377.5 463 47.3
Dinv28461 Davidia involucrata HOM05D006594 ORTHO05D008383 5.8e-102 375.6 362 55.2
Peaxi162Scf00915g00007 Petunia axillaris HOM05D006594 ORTHO05D008383 1.0e-101 374.8 443 47.6
Hma1.2p1_1323F.1_g275590 Hydrangea macrophylla HOM05D006594 ORTHO05D008383 1.7e-101 374.0 442 49.1
Aa31LG3G8560 Aethionema arabicum HOM05D006594 ORTHO05D008383 2.2e-101 373.6 444 49.5
Lsat_1_v5_gn_0_29900 Lactuca sativa HOM05D006594 ORTHO05D008383 2.9e-101 373.2 446 47.5
Haze_13736 Corylus avellana HOM05D006594 ORTHO05D008383 6.5e-101 372.1 451 49.9
Thhalv10013484m.g Eutrema salsugineum HOM05D006594 ORTHO05D008383 8.4e-101 371.7 445 49.0
AT5G52180 Arabidopsis thaliana HOM05D006594 ORTHO05D008383 1.4e-100 370.9 446 49.8
CARHR265100 Cardamine hirsuta HOM05D006594 ORTHO05D008383 2.5e-100 370.2 445 48.1
Oeu022583.1 Olea europaea HOM05D006594 ORTHO05D008383 2.5e-100 370.2 444 46.8
MSTRG.8446 Avicennia marina HOM05D006594 ORTHO05D008383 4.2e-100 369.4 447 46.5
AL8G26560 Arabidopsis lyrata HOM05D006594 ORTHO05D008383 4.6e-99 365.9 444 48.6
Carub.0008s1227 Capsella rubella HOM05D006594 ORTHO05D008383 1.0e-98 364.8 443 48.5
Solyc03g026010.3 Solanum lycopersicum HOM05D006594 ORTHO05D008383 2.3e-98 363.6 441 47.2
vmacro06700 Vaccinium macrocarpon HOM05D006594 ORTHO05D008383 2.3e-98 363.6 387 51.2
PGSC0003DMG400014324 Solanum tuberosum HOM05D006594 ORTHO05D008383 3.0e-98 363.2 442 47.5
Gohir.D12G260500 Gossypium hirsutum HOM05D006594 ORTHO05D008383 5.1e-98 362.5 452 46.5
FAN03G3172 Fragaria x ananassa HOM05D006594 ORTHO05D008383 8.7e-98 361.7 410 50.7
BcaB08g35566 Brassica carinata HOM05D006594 ORTHO05D008383 1.5e-97 360.9 444 48.4
Rhsim03G0179000 Rhododendron simsii HOM05D006594 ORTHO05D008383 3.3e-97 359.8 382 50.3
BcaC04g20605 Brassica carinata HOM05D006594 ORTHO05D008383 4.3e-97 359.4 442 48.9
A10p09870 Brassica napus HOM05D006594 ORTHO05D008383 4.3e-97 359.4 440 48.4
C09p41600 Brassica napus HOM05D006594 ORTHO05D008383 4.3e-97 359.4 442 48.9
BolC9t57044H Brassica oleracea HOM05D006594 ORTHO05D008383 4.3e-97 359.4 442 48.9
SGA_v2.0_scaffold113G31757 Striga asiatica HOM05D006594 ORTHO05D008383 4.3e-97 359.4 445 45.2
BraA10t43068Z Brassica rapa HOM05D006594 ORTHO05D008383 5.7e-97 359.0 440 48.2
HanXRQChr09g0253731 Helianthus annuus HOM05D006594 ORTHO05D008383 5.7e-97 359.0 446 46.0
Sopen03g004840 Solanum pennellii HOM05D006594 ORTHO05D008383 2.8e-96 356.7 442 46.4
Gorai.008G279100 Gossypium raimondii HOM05D006594 ORTHO05D008383 3.7e-96 356.3 450 45.8
Actinidia32874 Actinidia chinensis HOM05D006594 ORTHO05D008383 4.8e-96 355.9 393 49.1
Sed0005391 Sechium edule HOM05D006594 ORTHO05D008383 5.3e-95 352.4 392 48.7
Migut.F01134 Erythranthe guttata HOM05D006594 ORTHO05D008383 2.6e-94 350.1 449 46.1
Aqoxy7G00398 Aquilegia oxysepala HOM05D006594 ORTHO05D008383 4.5e-94 349.4 445 46.3
CAN.G856.1 Capsicum annuum HOM05D006594 ORTHO05D008383 5.9e-94 349.0 442 46.4
PSO782G0556 Papaver somniferum HOM05D006594 ORTHO05D008383 1.1e-92 344.7 461 46.9
TAR374G1009 Trochodendron aralioides HOM05D006594 ORTHO05D008383 1.1e-92 344.7 357 54.1
Manes.06G145800 Manihot esculenta HOM05D006594 ORTHO05D008383 1.3e-90 337.8 450 45.1
Sc19g0001600 Simmondsia chinensis HOM05D006594 ORTHO05D008383 1.3e-88 331.3 452 43.1
SalBow2G3298 Salvia bowleyana HOM05D006594 ORTHO05D008383 4.5e-86 322.8 442 41.9
MBI12_g14429_MAGBIO Magnolia biondii HOM05D006594 ORTHO05D008383 2.5e-84 317.0 386 47.2
CDE11G0822 Ceratophyllum demersum HOM05D006594 ORTHO05D008383 2.1e-83 313.9 441 42.4
PSO478G3258 Papaver somniferum HOM05D006594 ORTHO05D008383 3.6e-83 313.2 433 45.7
AUR62021215 Chenopodium quinoa HOM05D006594 ORTHO05D008383 5.3e-79 299.3 436 42.4
Ah.13g068460 Amaranthus hybridus HOM05D006594 ORTHO05D008383 1.8e-74 284.3 452 39.4
Nitab4.5_0001508g0080 Nicotiana tabacum HOM05D006594 ORTHO05D008383 2.5e-68 263.8 239 56.5
Gohir.A12G259700 Gossypium hirsutum HOM05D006594 ORTHO05D008383 4.7e-67 259.6 357 43.1
A06p20700 Brassica napus HOM05D006594 ORTHO05D008383 6.7e-66 255.8 239 56.5
Gohir.A08G100500 Gossypium hirsutum HOM05D006594 ORTHO05D008383 6.3e-64 249.2 360 43.3
ATR0757G038 Amborella trichopoda HOM05D006594 ORTHO05D008383 1.4e-63 248.1 574 31.4
unitig_0.g463 Utricularia gibba HOM05D006594 ORTHO05D008383 2.5e-60 237.3 255 48.6
AUR62016008 Chenopodium quinoa HOM05D006594 ORTHO05D008383 5.5e-60 236.1 341 43.4
Gorai.004G119800 Gossypium raimondii HOM05D006594 ORTHO05D008383 4.0e-58 229.9 421 38.5
FvH4_7g29210 Fragaria vesca HOM05D006594 ORTHO05D008383 2.7e-54 217.2 308 43.8
Gohir.D08G112040 Gossypium hirsutum HOM05D006594 ORTHO05D008383 2.8e-48 197.2 418 35.2
SEGI_30493 Sequoiadendron giganteum HOM05D006594 ORTHO05D008383 7.8e-46 189.1 520 29.2
arahy.Tifrunner.gnm1.ann1.J8117K Arachis hypogaea HOM05D006594 ORTHO05D008383 2.5e-44 184.1 253 46.6
Nitab4.5_0000716g0260 Nicotiana tabacum HOM05D006594 ORTHO05D008383 1.2e-43 181.8 267 39.7
Lj1P995T25 Lonicera japonica HOM05D006594 ORTHO05D008383 1.8e-42 177.9 144 65.3
arahy.Tifrunner.gnm1.ann1.A65ZGP Arachis hypogaea HOM05D006594 ORTHO05D008383 1.7e-40 171.4 180 55.0
arahy.Tifrunner.gnm1.ann1.PB1XHH Arachis hypogaea HOM05D006594 ORTHO05D008383 1.7e-37 161.4 248 41.9
Thecc.03G173100 Theobroma cacao HOM05D006594 ORTHO05D008383 3.9e-37 160.2 243 40.3
Zm00001eb378500 Zea mays HOM05D006594 ORTHO05D008383 2.3e-34 151.0 414 32.9
SMO116G0206 Selaginella moellendorffii HOM05D006594 ORTHO05D008383 1.9e-31 141.4 457 26.7
AL1G10170 Arabidopsis lyrata HOM05D006594 ORTHO05D008383 1.6e-30 138.3 119 60.5
VMungo0331G1728 Vigna mungo HOM05D006594 ORTHO05D008383 2.5e-28 131.0 102 65.7
Mapoly0061s0021 Marchantia polymorpha HOM05D006594 ORTHO05D008383 4.0e-26 123.6 510 25.7
Os06g0129000 Oryza sativa ssp. japonica HOM05D006594 ORTHO05D008383 5.2e-26 123.2 413 29.5
unitig_0.g462 Utricularia gibba HOM05D006594 ORTHO05D008383 5.2e-18 96.7 127 45.7
Atru.chr1.484 Acer truncatum HOM05D006594 ORTHO05D008383 4.4e-17 93.6 87 58.6
Lj1E995T0 Lonicera japonica HOM05D006594 ORTHO05D008383 1.3e-16 92.0 101 51.5
MD01G1198800 Malus domestica HOM05D006594 ORTHO05D008383 4.6e-14 83.6 200 33.5
SMO195G0004 Selaginella moellendorffii HOM05D025148 ORTHO05D050897 1.0e-13 82.4 106 42.5
VMungo0331G1316 Vigna mungo HOM05D006594 ORTHO05D008383 1.6e-11 75.1 81 50.6
Duzib068G0509 Durio zibethinus HOM05D006594 ORTHO05D008383 5.8e-09 66.6 171 31.0
VMungo1215G0888 Vigna mungo HOM05D006594 ORTHO05D008383 7.6e-09 66.2 56 55.4
EL10Ac3g05712 Beta vulgaris HOM05D006594 ORTHO05D008383 2.9e-08 64.3 91 48.4
SMO195G0056 Selaginella moellendorffii HOM05D006594 ORTHO05D008383 6.4e-08 63.2 124 28.2
VMungo1215G2423 Vigna mungo HOM05D006594 ORTHO05D008383 9.3e-07 59.3 153 34.6
arahy.Tifrunner.gnm1.ann1.0F3SR2 Arachis hypogaea HOM05D006594 ORTHO05D008383 2.7e-06 57.8 43 67.4


User provided reference genes

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