Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G14314 Trifolium pratense HOM05D000292 ORTHO05D014388 1.4e-48 196.1 109 100.0
Lj3g0008222 Lotus japonicus HOM05D000292 ORTHO05D000172 8.0e-31 137.1 96 78.1
TPR.G14296 Trifolium pratense HOM05D000292 ORTHO05D000172 8.0e-31 137.1 98 77.6
TPR.G18393 Trifolium pratense HOM05D000292 ORTHO05D000172 1.2e-29 133.3 96 74.0
Ca_20099_v3 Cicer arietinum L. HOM05D000292 ORTHO05D000172 2.0e-29 132.5 94 74.5
Lj3g0021020 Lotus japonicus HOM05D000292 ORTHO05D000172 4.4e-29 131.3 92 77.2
Lj3g0027479 Lotus japonicus HOM05D000292 ORTHO05D000172 4.4e-29 131.3 96 77.1
Lj3g0013202 Lotus japonicus HOM05D000292 ORTHO05D000172 7.5e-29 130.6 96 75.0
Medtr4g017410 Medicago truncatula HOM05D000292 ORTHO05D000172 9.8e-29 130.2 97 71.1
TPR.G8199 Trifolium pratense HOM05D000292 ORTHO05D000172 2.8e-28 128.6 102 69.6
Medtr4g017830 Medicago truncatula HOM05D000292 ORTHO05D000172 6.3e-28 127.5 96 70.8
arahy.Tifrunner.gnm1.ann1.LNF7XX Arachis hypogaea HOM05D000292 ORTHO05D000172 8.3e-28 127.1 96 69.8
Medtr4g017440 Medicago truncatula HOM05D000292 ORTHO05D000172 1.4e-27 126.3 93 72.0
Psat7g244280 Pisum sativum HOM05D000292 ORTHO05D000172 2.4e-27 125.6 85 77.6
TPR.G7629 Trifolium pratense HOM05D000292 ORTHO05D000172 2.4e-27 125.6 96 71.9
arahy.Tifrunner.gnm1.ann1.0WKU4E Arachis hypogaea HOM05D003028 ORTHO05D003465 3.1e-27 125.2 96 67.7
Medtr4g017470 Medicago truncatula HOM05D000292 ORTHO05D000172 3.1e-27 125.2 106 73.6
Psat7g242200 Pisum sativum HOM05D000292 ORTHO05D000172 5.4e-27 124.4 96 69.8
arahy.Tifrunner.gnm1.ann1.Z9ZW6U Arachis hypogaea HOM05D000292 ORTHO05D000172 1.7e-25 119.4 93 69.9
TPR.G13350 Trifolium pratense HOM05D000292 ORTHO05D000172 1.9e-24 115.9 80 78.8
TPR.G30631 Trifolium pratense HOM05D000292 ORTHO05D000172 5.5e-24 114.4 78 79.5
Medtr4g017550 Medicago truncatula HOM05D000292 ORTHO05D000172 1.6e-23 112.8 81 75.3
TPR.G18392 Trifolium pratense HOM05D000292 ORTHO05D000172 2.8e-23 112.1 124 55.6
arahy.Tifrunner.gnm1.ann1.L6Q662 Arachis hypogaea HOM05D000292 ORTHO05D000172 4.7e-23 111.3 93 68.8
TPR.G14304 Trifolium pratense HOM05D000292 ORTHO05D000172 9.8e-21 103.6 106 59.4
Medtr4g017610 Medicago truncatula HOM05D000292 ORTHO05D000172 3.1e-19 98.6 82 67.1
TPR.G13321 Trifolium pratense HOM05D000292 ORTHO05D000172 3.5e-18 95.1 96 60.4
Medtr4g019340 Medicago truncatula HOM05D000292 ORTHO05D000172 4.7e-15 84.7 68 70.6
Lj3g0006069 Lotus japonicus HOM05D000292 ORTHO05D000172 2.3e-14 82.4 94 48.9
Glyma.01G110100 Glycine max HOM05D000292 ORTHO05D000172 1.3e-12 76.6 93 48.4
Psat7g242440 Pisum sativum HOM05D000292 ORTHO05D000172 2.9e-12 75.5 95 48.4
arahy.Tifrunner.gnm1.ann1.PF7WV9 Arachis hypogaea HOM05D000292 ORTHO05D000172 3.7e-12 75.1 93 46.2
arahy.Tifrunner.gnm1.ann1.MAZ402 Arachis hypogaea HOM05D000292 ORTHO05D000172 8.3e-12 73.9 92 43.5
Medtr4g019240 Medicago truncatula HOM05D000292 ORTHO05D000172 8.3e-12 73.9 93 51.6
TPR.G18390 Trifolium pratense HOM05D000292 ORTHO05D000172 1.1e-11 73.6 93 49.5
Ca_20095_v3 Cicer arietinum L. HOM05D000292 ORTHO05D000172 1.9e-11 72.8 95 47.4
Glyma.18G194200 Glycine max HOM05D000292 ORTHO05D000172 1.9e-11 72.8 94 44.7
arahy.Tifrunner.gnm1.ann1.WI2C94 Arachis hypogaea HOM05D000292 ORTHO05D000172 2.4e-11 72.4 92 43.5
Medtr4g019310 Medicago truncatula HOM05D000292 ORTHO05D000172 2.4e-11 72.4 96 47.9
arahy.Tifrunner.gnm1.ann1.8PX07I Arachis hypogaea HOM05D000292 ORTHO05D000172 4.1e-11 71.6 81 51.9
arahy.Tifrunner.gnm1.ann1.X5IC73 Arachis hypogaea HOM05D000292 ORTHO05D000172 2.0e-10 69.3 81 50.6
VMungo0331G1917 Vigna mungo HOM05D000292 ORTHO05D000172 1.3e-09 66.6 91 45.1
Phvul.010G007500 Phaseolus vulgaris HOM05D000292 ORTHO05D000172 2.3e-09 65.9 91 45.1
Psat3g131640 Pisum sativum HOM05D000292 ORTHO05D000172 3.9e-09 65.1 85 44.7
AL1G22150 Arabidopsis lyrata HOM05D000292 ORTHO05D000172 5.0e-09 64.7 95 42.1
TPR.G31576 Trifolium pratense HOM05D000292 ORTHO05D000172 5.0e-09 64.7 48 68.8
Thhalv10002899m.g Eutrema salsugineum HOM05D000292 ORTHO05D000172 8.6e-09 63.9 108 38.0
Gohir.A01G224500 Gossypium hirsutum HOM05D000292 ORTHO05D000172 1.1e-08 63.5 89 42.7
TPR.G35785 Trifolium pratense HOM05D000292 ORTHO05D000172 1.5e-08 63.2 79 49.4
Lj1g0012967 Lotus japonicus HOM05D000292 ORTHO05D000172 1.9e-08 62.8 79 46.8
TPR.G11719 Trifolium pratense HOM05D000292 ORTHO05D000172 2.5e-08 62.4 98 34.7
Sp6g40510 Schrenkiella parvula HOM05D000292 ORTHO05D000172 4.3e-08 61.6 78 44.9
Carub.0002s0600 Capsella rubella HOM05D000292 ORTHO05D000172 5.6e-08 61.2 96 38.5
Gohir.D01G213901 Gossypium hirsutum HOM05D000292 ORTHO05D000172 5.6e-08 61.2 87 44.8
Gorai.002G260100 Gossypium raimondii HOM05D000292 ORTHO05D000172 5.6e-08 61.2 87 44.8
Sp5g15130 Schrenkiella parvula HOM05D000020 ORTHO05D000172 5.6e-08 61.2 83 44.6
THA.LOC104816225 Tarenaya hassleriana HOM05D000292 ORTHO05D000172 5.6e-08 61.2 87 39.1
TPR.G9015 Trifolium pratense HOM05D000292 ORTHO05D000172 5.6e-08 61.2 87 43.7
Phvul.008G114800 Phaseolus vulgaris HOM05D000292 ORTHO05D000172 7.3e-08 60.8 84 38.1
TPR.G34868 Trifolium pratense HOM05D000292 ORTHO05D000172 7.3e-08 60.8 78 46.2
DCAR_016318 Daucus carota HOM05D000292 ORTHO05D000172 9.5e-08 60.5 85 44.7
Lj1g0016229 Lotus japonicus HOM05D000292 ORTHO05D000172 9.5e-08 60.5 74 45.9
Medtr7g063850 Medicago truncatula HOM05D000292 ORTHO05D000172 9.5e-08 60.5 80 40.0
AL6G11050 Arabidopsis lyrata HOM05D000292 ORTHO05D000172 1.2e-07 60.1 96 36.5
Ca_09163_v3 Cicer arietinum L. HOM05D000292 ORTHO05D000172 1.2e-07 60.1 83 42.2
Peaxi162Scf01352g00021 Petunia axillaris HOM05D000292 ORTHO05D000172 1.2e-07 60.1 81 45.7
Peaxi162Scf01547g00007 Petunia axillaris HOM05D000292 ORTHO05D000172 1.2e-07 60.1 81 45.7
Psat0s3131g0040 Pisum sativum HOM05D000292 ORTHO05D000172 1.2e-07 60.1 89 38.2
Psat5g040960 Pisum sativum HOM05D000292 ORTHO05D000172 1.2e-07 60.1 76 46.1
Sopen09g006710 Solanum pennellii HOM05D000292 ORTHO05D000172 1.2e-07 60.1 82 43.9
TPR.G1548 Trifolium pratense HOM05D000292 ORTHO05D000172 1.2e-07 60.1 85 41.2
VMungo1383G1253 Vigna mungo HOM05D000292 ORTHO05D000172 1.2e-07 60.1 79 43.0
AT5G01140 Arabidopsis thaliana HOM05D000292 ORTHO05D000172 1.6e-07 59.7 86 41.9
A05p39770 Brassica napus HOM05D000292 ORTHO05D000172 1.6e-07 59.7 78 41.0
BraA05t22760Z Brassica rapa HOM05D000292 ORTHO05D000172 1.6e-07 59.7 78 41.0
Migut.M00443 Erythranthe guttata HOM05D000292 ORTHO05D000172 1.6e-07 59.7 74 45.9
Lj3g0027836 Lotus japonicus HOM05D000292 ORTHO05D000172 1.6e-07 59.7 77 45.5
Medtr7g066430 Medicago truncatula HOM05D000292 ORTHO05D000172 1.6e-07 59.7 84 42.9
Medtr7g066570 Medicago truncatula HOM05D000292 ORTHO05D000172 1.6e-07 59.7 85 41.2
Psat7g242240 Pisum sativum HOM05D000292 ORTHO05D000172 1.6e-07 59.7 94 41.5
AL3G20190 Arabidopsis lyrata HOM05D000292 ORTHO05D000172 2.1e-07 59.3 74 44.6
BcaC05g29642 Brassica carinata HOM05D000292 ORTHO05D000172 2.1e-07 59.3 78 41.0
C03p00640 Brassica napus HOM05D000292 ORTHO05D014388 2.1e-07 59.3 86 39.5
C03p08260 Brassica napus HOM05D000292 ORTHO05D014388 2.1e-07 59.3 86 39.5
C05p58810 Brassica napus HOM05D000292 ORTHO05D000172 2.1e-07 59.3 78 41.0
CARHR211440 Cardamine hirsuta HOM05D000292 ORTHO05D000172 2.1e-07 59.3 98 42.9
Oeu044371.1 Olea europaea HOM05D000292 ORTHO05D000172 2.1e-07 59.3 91 44.0
Psat3g135120 Pisum sativum HOM05D000292 ORTHO05D000172 2.1e-07 59.3 86 41.9
SalBow7G1490 Salvia bowleyana HOM05D000292 ORTHO05D000172 2.1e-07 59.3 67 50.7
TPR.G28753 Trifolium pratense HOM05D000292 ORTHO05D000172 2.1e-07 59.3 96 39.6
AT5G01150 Arabidopsis thaliana HOM05D000292 ORTHO05D000172 2.8e-07 58.9 93 37.6
Lalb_Chr03g0042921 Lupinus albus HOM05D000292 ORTHO05D000172 2.8e-07 58.9 88 39.8
Medtr7g012680 Medicago truncatula HOM05D000292 ORTHO05D000172 2.8e-07 58.9 91 41.8
Psat4g099600 Pisum sativum HOM05D000292 ORTHO05D000172 2.8e-07 58.9 76 46.1
TPR.G35161 Trifolium pratense HOM05D000292 ORTHO05D000172 2.8e-07 58.9 87 41.4
TPR.G9006 Trifolium pratense HOM05D000292 ORTHO05D000172 2.8e-07 58.9 79 46.8
BcaB06g26865 Brassica carinata HOM05D000292 ORTHO05D000172 3.6e-07 58.5 80 43.8
Phvul.008G111300 Phaseolus vulgaris HOM05D000292 ORTHO05D000172 3.6e-07 58.5 85 44.7
SalBow7G0008 Salvia bowleyana HOM05D000292 ORTHO05D000172 3.6e-07 58.5 68 48.5
TAR636G2636 Trochodendron aralioides HOM05D000292 ORTHO05D000172 3.6e-07 58.5 81 44.4
AL1G17320 Arabidopsis lyrata HOM05D000292 ORTHO05D000172 4.7e-07 58.2 81 45.7
AL638U10010 Arabidopsis lyrata HOM05D000292 ORTHO05D000172 4.7e-07 58.2 81 45.7
BolC5t34533H Brassica oleracea HOM05D000292 ORTHO05D000172 4.7e-07 58.2 78 39.7
Migut.M00444 Erythranthe guttata HOM05D000292 ORTHO05D000172 4.7e-07 58.2 78 44.9
Medtr7g066340 Medicago truncatula HOM05D000292 ORTHO05D000172 4.7e-07 58.2 86 37.2
Carub.0001s1073 Capsella rubella HOM05D000292 ORTHO05D000172 6.2e-07 57.8 73 47.9
Medtr1g014060 Medicago truncatula HOM05D000292 ORTHO05D000172 6.2e-07 57.8 86 41.9
Medtr7g066280 Medicago truncatula HOM05D000292 ORTHO05D000172 6.2e-07 57.8 86 37.2
Medtr7g066390 Medicago truncatula HOM05D000292 ORTHO05D000172 6.2e-07 57.8 86 40.7
THA.LOC104823279 Tarenaya hassleriana HOM05D000292 ORTHO05D000172 6.2e-07 57.8 99 39.4
Glyma.18G194800 Glycine max HOM05D000292 ORTHO05D000172 8.0e-07 57.4 73 42.5
VMungo1383G2273 Vigna mungo HOM05D000292 ORTHO05D000172 8.0e-07 57.4 85 38.8
Aqoxy1G00750 Aquilegia oxysepala HOM05D000292 ORTHO05D000172 1.1e-06 57.0 82 42.7
Carub.0001s1072 Capsella rubella HOM05D000292 ORTHO05D000172 1.1e-06 57.0 96 38.5
Glyma.18G194700 Glycine max HOM05D000292 ORTHO05D000172 1.1e-06 57.0 72 43.1
Phvul.008G110700 Phaseolus vulgaris HOM05D000292 ORTHO05D000172 1.1e-06 57.0 80 40.0
Aa31LG3G1640 Aethionema arabicum HOM05D000292 ORTHO05D000172 1.4e-06 56.6 96 35.4
AT5G01120 Arabidopsis thaliana HOM05D000292 ORTHO05D000172 1.4e-06 56.6 83 36.1
AT5G37320 Arabidopsis thaliana HOM05D000292 ORTHO05D016587 1.4e-06 56.6 91 37.4
Carub.0006s0075 Capsella rubella HOM05D000292 ORTHO05D000172 1.4e-06 56.6 69 42.0
Thhalv10012284m.g Eutrema salsugineum HOM05D000292 ORTHO05D016587 1.4e-06 56.6 73 41.1
Medtr7g058700 Medicago truncatula HOM05D000834 ORTHO05D000909 1.4e-06 56.6 78 37.2
Medtr7g066400 Medicago truncatula HOM05D000292 ORTHO05D000172 1.4e-06 56.6 82 41.5
Peaxi162Scf00141g00027 Petunia axillaris HOM05D000292 ORTHO05D000172 1.4e-06 56.6 76 44.7
Aa31LG1G3760 Aethionema arabicum HOM05D000292 ORTHO05D000172 1.8e-06 56.2 90 40.0
AL6G11080 Arabidopsis lyrata HOM05D000292 ORTHO05D000172 1.8e-06 56.2 84 35.7
BcaB01g06087 Brassica carinata HOM05D000292 ORTHO05D014388 1.8e-06 56.2 69 49.3
A01p26210 Brassica napus HOM05D000292 ORTHO05D000172 1.8e-06 56.2 74 41.9
C03p00660 Brassica napus HOM05D000292 ORTHO05D014388 1.8e-06 56.2 73 46.6
BolC3t12629H Brassica oleracea HOM05D000292 ORTHO05D014388 1.8e-06 56.2 73 46.6
BraA01t02544Z Brassica rapa HOM05D000292 ORTHO05D000172 1.8e-06 56.2 74 41.9
Glyma.18G293900 Glycine max HOM05D000292 ORTHO05D000172 1.8e-06 56.2 80 40.0
Medtr7g066310 Medicago truncatula HOM05D000292 ORTHO05D000172 1.8e-06 56.2 86 36.0
TPR.G34874 Trifolium pratense HOM05D000292 ORTHO05D000172 1.8e-06 56.2 98 36.7
AL9U10500 Arabidopsis lyrata HOM05D001832 ORTHO05D001861 2.3e-06 55.8 87 36.8
CARHR107070 Cardamine hirsuta HOM05D000292 ORTHO05D000172 2.3e-06 55.8 108 35.2
CARHR107080 Cardamine hirsuta HOM05D000292 ORTHO05D000172 2.3e-06 55.8 99 35.4
Duzib168G0276 Durio zibethinus HOM05D000292 ORTHO05D000172 2.3e-06 55.8 93 38.7
Medtr7g062280 Medicago truncatula HOM05D000292 ORTHO05D000172 2.3e-06 55.8 81 43.2
Oeu004611.5 Olea europaea HOM05D000292 ORTHO05D000172 2.3e-06 55.8 96 36.5
Phvul.008G110500 Phaseolus vulgaris HOM05D000292 ORTHO05D000172 2.3e-06 55.8 80 40.0
Sp1g34300 Schrenkiella parvula HOM05D000292 ORTHO05D000172 2.3e-06 55.8 73 37.0
SGA_v2.0_scaffold34G13849 Striga asiatica HOM05D000292 ORTHO05D000172 2.3e-06 55.8 76 46.1
Aqoxy446s002 Aquilegia oxysepala HOM05D000292 ORTHO05D000172 3.1e-06 55.5 67 43.3
Aqoxy5G00485 Aquilegia oxysepala HOM05D000959 ORTHO05D000775 3.1e-06 55.5 67 43.3
Aqoxy7G03856 Aquilegia oxysepala HOM05D000292 ORTHO05D000172 3.1e-06 55.5 79 36.7
BcaB04g17549 Brassica carinata HOM05D000292 ORTHO05D000172 3.1e-06 55.5 81 40.7
C04p47080 Brassica napus HOM05D000292 ORTHO05D000172 3.1e-06 55.5 91 35.2
BolC4t26302H Brassica oleracea HOM05D000292 ORTHO05D000172 3.1e-06 55.5 91 35.2
Cc02_g23130 Coffea canephora HOM05D000292 ORTHO05D000172 3.1e-06 55.5 66 48.5
Glyma.07G137500 Glycine max HOM05D000292 ORTHO05D000172 3.1e-06 55.5 90 37.8
Gohir.A10G212033 Gossypium hirsutum HOM05D000292 ORTHO05D000172 3.1e-06 55.5 84 45.2
Medtr1g041315 Medicago truncatula HOM05D000292 ORTHO05D000172 3.1e-06 55.5 82 39.0
Medtr7g063880 Medicago truncatula HOM05D000292 ORTHO05D000172 3.1e-06 55.5 90 38.9
Peaxi162Scf00141g00031 Petunia axillaris HOM05D000292 ORTHO05D000172 3.1e-06 55.5 79 44.3
PGSC0003DMG400020357 Solanum tuberosum HOM05D000292 ORTHO05D000172 3.1e-06 55.5 69 49.3
THA.LOC104816224 Tarenaya hassleriana HOM05D000292 ORTHO05D000172 3.1e-06 55.5 79 39.2
TPR.G34867 Trifolium pratense HOM05D000292 ORTHO05D000172 3.1e-06 55.5 84 39.3
A07p06370 Brassica napus HOM05D000292 ORTHO05D000172 4.0e-06 55.1 78 41.0
BolC1t03264H Brassica oleracea HOM05D000292 ORTHO05D000172 4.0e-06 55.1 80 38.8
Carub.0003s0828 Capsella rubella HOM05D000292 ORTHO05D000172 4.0e-06 55.1 75 42.7
Migut.M00468 Erythranthe guttata HOM05D000292 ORTHO05D000172 4.0e-06 55.1 75 42.7
Medtr7g066350 Medicago truncatula HOM05D000292 ORTHO05D000172 4.0e-06 55.1 82 40.2
SGA_v2.0_scaffold34G13846 Striga asiatica HOM05D000292 ORTHO05D000172 4.0e-06 55.1 76 43.4
Migut.M00445 Erythranthe guttata HOM05D000292 ORTHO05D000172 5.2e-06 54.7 68 48.5
Medtr7g058710 Medicago truncatula HOM05D000292 ORTHO05D000172 5.2e-06 54.7 93 32.3
SalBow7G4519 Salvia bowleyana HOM05D000292 ORTHO05D000172 5.2e-06 54.7 91 42.9
Sp3g24320 Schrenkiella parvula HOM05D000292 ORTHO05D000172 5.2e-06 54.7 80 42.5
TAR636G3432 Trochodendron aralioides HOM05D000292 ORTHO05D000172 5.2e-06 54.7 81 42.0
A04p13300 Brassica napus HOM05D000292 ORTHO05D000172 6.8e-06 54.3 99 34.3
Migut.F01320 Erythranthe guttata HOM05D000292 ORTHO05D000172 6.8e-06 54.3 75 42.7
LjContig00312_ERROPOS870357g0020002 Lotus japonicus HOM05D000292 ORTHO05D000172 6.8e-06 54.3 92 35.9
Medtr7g063670 Medicago truncatula HOM05D000292 ORTHO05D000172 6.8e-06 54.3 79 43.0
Medtr7g066410 Medicago truncatula HOM05D000292 ORTHO05D000172 6.8e-06 54.3 79 41.8
TPR.G1549 Trifolium pratense HOM05D000292 ORTHO05D000172 6.8e-06 54.3 80 42.5
TPR.G2275 Trifolium pratense HOM05D000292 ORTHO05D000172 6.8e-06 54.3 82 39.0
TPR.G31737 Trifolium pratense HOM05D000292 ORTHO05D000172 6.8e-06 54.3 80 45.0
TAR636G1917 Trochodendron aralioides HOM05D000292 ORTHO05D000172 6.8e-06 54.3 81 42.0
BcaC09g49752 Brassica carinata HOM05D000292 ORTHO05D000172 8.9e-06 53.9 80 37.5
Dinv17078 Davidia involucrata HOM05D000292 ORTHO05D000172 8.9e-06 53.9 92 38.0
Dinv43022 Davidia involucrata HOM05D000292 ORTHO05D000172 8.9e-06 53.9 92 38.0
Dinv43076 Davidia involucrata HOM05D000292 ORTHO05D000172 8.9e-06 53.9 92 38.0
Migut.M00442 Erythranthe guttata HOM05D000292 ORTHO05D000172 8.9e-06 53.9 73 45.2
Nitab4.5_0021301g0010 Nicotiana tabacum HOM05D000292 ORTHO05D000172 8.9e-06 53.9 90 43.3
SGA_v2.0_scaffold34G13853 Striga asiatica HOM05D000292 ORTHO05D000172 8.9e-06 53.9 80 42.5
TPR.G1577 Trifolium pratense HOM05D000292 ORTHO05D000172 8.9e-06 53.9 82 39.0
TAR636G0285 Trochodendron aralioides HOM05D000292 ORTHO05D000172 8.9e-06 53.9 81 40.7
TAR636G1912 Trochodendron aralioides HOM05D000292 ORTHO05D000172 8.9e-06 53.9 95 37.9


User provided reference genes

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