Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G14291 Trifolium pratense HOM05D006838 ORTHO05D008915 6.7e-78 293.9 144 100.0
TPR.G38007 Trifolium pratense HOM05D006838 ORTHO05D008915 8.5e-73 276.9 138 96.4
Medtr5g006370 Medicago truncatula HOM05D006838 ORTHO05D008915 1.4e-43 179.9 139 64.7
TPR.G37905 Trifolium pratense HOM05D006838 ORTHO05D008915 5.0e-41 171.4 143 59.4
Psat4g210280 Pisum sativum HOM05D006838 ORTHO05D008915 1.5e-40 169.9 143 59.4
Medtr5g006360 Medicago truncatula HOM05D006838 ORTHO05D008915 9.5e-40 167.2 140 58.6
LjContig00408g0014048 Lotus japonicus HOM05D006838 ORTHO05D008915 2.3e-38 162.5 143 56.6
arahy.Tifrunner.gnm1.ann1.00V3DL Arachis hypogaea HOM05D006838 ORTHO05D008915 5.2e-38 161.4 143 53.8
arahy.Tifrunner.gnm1.ann1.08EL86 Arachis hypogaea HOM05D006838 ORTHO05D008915 8.9e-38 160.6 143 53.1
Eucgr.H03460 Eucalyptus grandis HOM05D006838 ORTHO05D008915 2.0e-37 159.5 143 51.7
FAN12G2261 Fragaria x ananassa HOM05D006838 ORTHO05D008915 2.0e-37 159.5 141 53.9
CANSAT78G0040 Cannabis sativa HOM05D006838 ORTHO05D008915 2.6e-37 159.1 136 55.9
TWI73G0194 Tripterygium wilfordii HOM05D006838 ORTHO05D008915 7.5e-37 157.5 142 52.1
RcHm_v2.0_Chr4g0416051 Rosa chinensis HOM05D006838 ORTHO05D008915 9.9e-37 157.1 140 54.3
PGR004G0798 Punica granatum HOM05D006838 ORTHO05D008915 2.9e-36 155.6 145 48.3
Ca_24400_v3 Cicer arietinum L. HOM05D006838 ORTHO05D008915 3.7e-36 155.2 138 56.5
Eucgr.H03458 Eucalyptus grandis HOM05D006838 ORTHO05D008915 1.9e-35 152.9 143 48.3
Haze_00889 Corylus avellana HOM05D000001 ORTHO05D000003 3.2e-35 152.1 143 51.7
QL06p002133 Quercus lobata HOM05D006838 ORTHO05D008915 3.2e-35 152.1 141 53.9
Aa31LG5G4930 Aethionema arabicum HOM05D006838 ORTHO05D008915 4.1e-35 151.8 138 52.9
Manes.03G177700 Manihot esculenta HOM05D006838 ORTHO05D008915 4.1e-35 151.8 142 51.4
Cfa015659 Carpinus fangiana HOM05D006838 ORTHO05D008915 5.4e-35 151.4 143 51.0
Gohir.D01G021700 Gossypium hirsutum HOM05D006838 ORTHO05D008915 7.1e-35 151.0 141 49.6
Prupe.1G014900 Prunus persica HOM05D006838 ORTHO05D008915 7.1e-35 151.0 141 52.5
CARHR125890 Cardamine hirsuta HOM05D006838 ORTHO05D008915 1.6e-34 149.8 140 52.9
Gorai.002G024200 Gossypium raimondii HOM05D006838 ORTHO05D008915 1.6e-34 149.8 141 48.9
FvH4_4g16340 Fragaria vesca HOM05D006838 ORTHO05D008915 2.1e-34 149.4 136 52.9
BcaB02g10450 Brassica carinata HOM05D006838 ORTHO05D008915 3.5e-34 148.7 139 51.1
BolC4t23300H Brassica oleracea HOM05D006838 ORTHO05D008915 3.5e-34 148.7 138 51.4
A05p13410 Brassica napus HOM05D006838 ORTHO05D008915 4.6e-34 148.3 138 51.4
C04p17530 Brassica napus HOM05D006838 ORTHO05D008915 4.6e-34 148.3 138 50.7
Carub.0004s1344 Capsella rubella HOM05D006838 ORTHO05D008915 4.6e-34 148.3 135 53.3
MD13G1194100 Malus domestica HOM05D006838 ORTHO05D008915 7.8e-34 147.5 134 53.0
BraA05t20279Z Brassica rapa HOM05D006838 ORTHO05D008915 1.0e-33 147.1 138 51.4
Cpa.g.sc58.98 Carica papaya HOM05D006838 ORTHO05D008915 1.0e-33 147.1 143 48.3
CsaV3_7G022460 Cucumis sativus L. HOM05D006838 ORTHO05D008915 1.0e-33 147.1 148 52.7
Thhalv10017983m.g Eutrema salsugineum HOM05D006838 ORTHO05D008915 1.0e-33 147.1 138 51.4
Thecc.04G232900 Theobroma cacao HOM05D006838 ORTHO05D008915 1.7e-33 146.4 142 48.6
AT2G32090 Arabidopsis thaliana HOM05D006838 ORTHO05D008915 3.9e-33 145.2 135 52.6
Sp4g14500 Schrenkiella parvula HOM05D006838 ORTHO05D008915 3.9e-33 145.2 137 52.6
AL103U10040 Arabidopsis lyrata HOM05D006838 ORTHO05D008915 5.1e-33 144.8 135 51.9
Duzib052G0907 Durio zibethinus HOM05D006838 ORTHO05D008915 5.1e-33 144.8 141 47.5
AL4G27470 Arabidopsis lyrata HOM05D006838 ORTHO05D008915 6.6e-33 144.4 135 51.9
Atru.chr4.2454 Acer truncatum HOM05D006838 ORTHO05D008915 1.9e-32 142.9 142 45.8
Sed0026467 Sechium edule HOM05D006838 ORTHO05D008915 2.5e-32 142.5 148 50.7
Peaxi162Scf00092g00717 Petunia axillaris HOM05D006838 ORTHO05D008915 5.6e-32 141.4 146 47.9
Nitab4.5_0000316g0010 Nicotiana tabacum HOM05D006838 ORTHO05D008915 7.3e-32 141.0 146 47.9
Dinv13999 Davidia involucrata HOM05D006838 ORTHO05D008915 9.5e-32 140.6 138 50.0
Nitab4.5_0001342g0050 Nicotiana tabacum HOM05D006838 ORTHO05D008915 1.2e-31 140.2 146 47.9
THA.LOC104816050 Tarenaya hassleriana HOM05D006838 ORTHO05D008915 1.2e-31 140.2 139 48.2
Hund12124 Selenicereus undatus HOM05D006838 ORTHO05D008915 2.1e-31 139.4 137 51.1
Potri.010G087000 Populus trichocarpa HOM05D006838 ORTHO05D008915 4.7e-31 138.3 142 47.2
AUR62033621 Chenopodium quinoa HOM05D006838 ORTHO05D008915 1.8e-30 136.3 137 49.6
Sabra08G0117200 Salix brachista HOM05D006838 ORTHO05D008915 1.8e-30 136.3 140 47.1
CiPaw.01G167000 Carya illinoinensis HOM05D006838 ORTHO05D008915 2.4e-30 136.0 141 48.2
AUR62038604 Chenopodium quinoa HOM05D006838 ORTHO05D008915 2.4e-30 136.0 137 49.6
CSS0050318 Camellia sinensis var. sinensis HOM05D006838 ORTHO05D008915 5.2e-30 134.8 136 49.3
Cc03_g03870 Coffea canephora HOM05D006838 ORTHO05D008915 5.2e-30 134.8 146 45.9
Lsat_1_v5_gn_5_35600 Lactuca sativa HOM05D006838 ORTHO05D008915 5.2e-30 134.8 137 50.4
Actinidia08489 Actinidia chinensis HOM05D006838 ORTHO05D008915 6.8e-30 134.4 140 47.1
EL10Ac3g06416 Beta vulgaris HOM05D006838 ORTHO05D008915 1.5e-29 133.3 135 47.4
CAN.G1094.4 Capsicum annuum HOM05D006838 ORTHO05D008915 1.5e-29 133.3 146 45.9
Gohir.A01G023700 Gossypium hirsutum HOM05D006838 ORTHO05D008915 1.5e-29 133.3 134 46.3
SGA_v2.0_scaffold39G15215 Striga asiatica HOM05D006838 ORTHO05D008915 1.5e-29 133.3 144 49.3
ECA246G0107 Erigeron canadensis HOM05D006838 ORTHO05D008915 3.4e-29 132.1 139 47.5
Sc13g0004470 Simmondsia chinensis HOM05D006838 ORTHO05D008915 5.8e-29 131.3 135 48.1
PGSC0003DMG400032255 Solanum tuberosum HOM05D006838 ORTHO05D008915 7.6e-29 131.0 146 45.9
MELO3C012654.2 Cucumis melo HOM05D006838 ORTHO05D008915 9.9e-29 130.6 174 44.8
HanXRQChr10g0288871 Helianthus annuus HOM05D006838 ORTHO05D008915 1.7e-28 129.8 139 46.8
Solyc09g082115.1 Solanum lycopersicum HOM05D006838 ORTHO05D008915 1.7e-28 129.8 146 45.2
Sopen09g031000 Solanum pennellii HOM05D006838 ORTHO05D008915 2.9e-28 129.0 146 44.5
PSO832G4526 Papaver somniferum HOM05D006838 ORTHO05D008915 8.4e-28 127.5 134 49.3
MSTRG.4035 Avicennia marina HOM05D006838 ORTHO05D008915 1.1e-27 127.1 138 46.4
Ah.13g072770 Amaranthus hybridus HOM05D006838 ORTHO05D008915 1.4e-27 126.7 137 48.2
PSO210G6947 Papaver somniferum HOM05D006838 ORTHO05D008915 1.4e-27 126.7 134 49.3
unitig_32.g11729 Utricularia gibba HOM05D006838 ORTHO05D008915 1.9e-27 126.3 141 46.1
DCAR_030640 Daucus carota HOM05D006838 ORTHO05D008915 7.1e-27 124.4 133 47.4
Nn4g26336 Nelumbo nucifera HOM05D006838 ORTHO05D008915 7.1e-27 124.4 135 45.2
TAR365G1174 Trochodendron aralioides HOM05D006838 ORTHO05D008915 9.2e-27 124.0 135 47.4
MBI12_g03925_MAGBIO Magnolia biondii HOM05D006838 ORTHO05D008915 2.1e-26 122.9 137 43.1
FAN17G0591 Fragaria x ananassa HOM05D006838 ORTHO05D008915 3.5e-26 122.1 110 53.6
FvH4_1g03680 Fragaria vesca HOM05D006838 ORTHO05D008915 2.3e-25 119.4 140 43.6
Migut.G00344 Erythranthe guttata HOM05D006838 ORTHO05D008915 3.0e-25 119.0 127 48.8
RcHm_v2.0_Chr4g0409411 Rosa chinensis HOM05D006838 ORTHO05D008915 1.1e-24 117.1 143 44.8
SalBow2G1460 Salvia bowleyana HOM05D001359 ORTHO05D001200 1.1e-24 117.1 136 45.6
Actinidia36957 Actinidia chinensis HOM05D006838 ORTHO05D008915 1.5e-24 116.7 132 47.0
Aqoxy5G00461 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 1.5e-24 116.7 134 45.5
FAN19G3212 Fragaria x ananassa HOM05D006838 ORTHO05D008915 1.9e-24 116.3 141 43.3
CDE05G3614 Ceratophyllum demersum HOM05D006838 ORTHO05D008915 2.5e-24 115.9 162 41.4
SalBow2G1378 Salvia bowleyana HOM05D006838 ORTHO05D008915 7.3e-24 114.4 167 40.1
COL.COLO4_21487 Corchorus olitorius HOM05D006838 ORTHO05D000003 9.6e-24 114.0 117 45.3
GSVIVG01017987001 Vitis vinifera HOM05D006838 ORTHO05D008915 9.6e-24 114.0 133 45.1
AagrBONN_evm.TU.Sc2ySwM_362.295 Anthoceros agrestis HOM05D006838 ORTHO05D008915 1.2e-23 113.6 135 43.0
FAN22G1840 Fragaria x ananassa HOM05D006838 ORTHO05D008915 1.6e-23 113.2 135 43.7
Ciclev10006131m.g Citrus clementina HOM05D006838 ORTHO05D008915 6.2e-23 111.3 107 50.5
Lsat_1_v5_gn_5_35680 Lactuca sativa HOM05D006838 ORTHO05D008915 4.0e-22 108.6 111 49.5
SEGI_21646 Sequoiadendron giganteum HOM05D006838 ORTHO05D008915 9.0e-22 107.5 134 41.8
Pp3c10_20820 Physcomitrium patens HOM05D006838 ORTHO05D008915 1.5e-21 106.7 137 42.3
AagrBONN_evm.TU.Sc2ySwM_362.293 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.8e-21 104.8 135 40.0
vmacro15346 Vaccinium macrocarpon HOM05D006838 ORTHO05D008915 5.8e-21 104.8 104 49.0
Mapoly0185s0021 Marchantia polymorpha HOM05D006838 ORTHO05D008915 9.9e-21 104.0 136 41.9
SMO304G0126 Selaginella moellendorffii HOM05D006838 ORTHO05D008915 3.8e-20 102.1 127 42.5
Dinv44539 Davidia involucrata HOM05D006838 ORTHO05D008915 6.4e-20 101.3 100 49.0
MBI11_g31274_MAGBIO Magnolia biondii HOM05D002513 ORTHO05D002720 8.4e-20 100.9 105 47.6
Os03g0659300 Oryza sativa ssp. japonica HOM05D006838 ORTHO05D008915 1.4e-19 100.1 134 35.8
Zm00001eb052640 Zea mays HOM05D006838 ORTHO05D008915 3.2e-19 99.0 134 36.6
MBI11_g31275_MAGBIO Magnolia biondii HOM05D006838 ORTHO05D008915 4.2e-19 98.6 108 43.5
Rhsim02G0025700 Rhododendron simsii HOM05D000001 ORTHO05D000003 4.2e-19 98.6 104 47.1
SHI00446 Sapria himalayana HOM05D006838 ORTHO05D008915 4.2e-19 98.6 119 42.9
Aqoxy6G02670 Aquilegia oxysepala HOM05D006838 ORTHO05D008915 1.9e-16 89.7 142 39.4
FAN17G0416 Fragaria x ananassa HOM05D006838 ORTHO05D001690 1.3e-15 87.0 128 39.8
Potri.008G153602 Populus trichocarpa HOM05D006838 ORTHO05D008915 4.8e-15 85.1 90 44.4
Sabra10G0056600 Salix brachista HOM05D006838 ORTHO05D008915 2.0e-13 79.7 141 35.5
RcHm_v2.0_Chr4g0416061 Rosa chinensis HOM05D006838 ORTHO05D008915 1.3e-12 77.0 98 39.8
Aqoxy4G00384 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 1.9e-11 73.2 60 55.0
ATR0697G082 Amborella trichopoda HOM05D006838 ORTHO05D008915 2.4e-11 72.8 104 39.4
CiPaw.06G173400 Carya illinoinensis HOM05D000986 ORTHO05D000794 1.3e-07 60.5 133 29.3
Lsat_1_v5_gn_7_76640 Lactuca sativa HOM05D000986 ORTHO05D000794 3.7e-07 58.9 133 30.1
Oeu045932.1 Olea europaea HOM05D000986 ORTHO05D000794 3.7e-07 58.9 134 28.4
Nitab4.5_0000787g0270 Nicotiana tabacum HOM05D000986 ORTHO05D000794 4.8e-07 58.5 133 29.3
Oeu045926.1 Olea europaea HOM05D000986 ORTHO05D000794 4.8e-07 58.5 134 27.6
Lsat_1_v5_gn_7_75940 Lactuca sativa HOM05D000986 ORTHO05D000794 6.2e-07 58.2 133 28.6
HPP92_017391 Vanilla planifolia HOM05D006838 ORTHO05D008915 8.1e-07 57.8 58 46.6
Peaxi162Scf00011g01126 Petunia axillaris HOM05D000986 ORTHO05D000794 3.1e-06 55.8 133 29.3
Peaxi162Scf00011g01219 Petunia axillaris HOM05D000986 ORTHO05D000794 3.1e-06 55.8 133 29.3
MSTRG.20319 Avicennia marina HOM05D000986 ORTHO05D000794 9.0e-06 54.3 135 26.7


User provided reference genes

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