Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G14207 Trifolium pratense HOM05D007115 ORTHO05D008923 4.0e-122 441.4 221 100.0
Medtr3g099140 Medicago truncatula HOM05D007115 ORTHO05D008923 3.1e-98 362.1 224 84.4
Ca_16052_v3 Cicer arietinum L. HOM05D007115 ORTHO05D008923 2.1e-94 349.4 222 82.0
Glyma.06G169300 Glycine max HOM05D007115 ORTHO05D008923 1.8e-93 346.3 221 79.6
Glyma.04G196500 Glycine max HOM05D007115 ORTHO05D008923 5.7e-92 341.3 220 78.2
Phvul.009G165800 Phaseolus vulgaris HOM05D007115 ORTHO05D008923 2.1e-91 339.3 221 78.3
Lj1g0010129 Lotus japonicus HOM05D007115 ORTHO05D008923 7.6e-89 330.9 221 78.7
Lalb_Chr11g0069511 Lupinus albus HOM05D007115 ORTHO05D008923 2.5e-84 315.8 219 75.8
VMungo1309G2111 Vigna mungo HOM05D007115 ORTHO05D008923 2.5e-84 315.8 221 73.8
Potri.015G097700 Populus trichocarpa HOM05D007115 ORTHO05D008923 2.3e-77 292.7 216 70.4
Sabra15G0118300 Salix brachista HOM05D007115 ORTHO05D008923 2.3e-77 292.7 216 70.4
CiPaw.12G043900 Carya illinoinensis HOM05D007115 ORTHO05D008923 7.4e-76 287.7 205 72.7
Cfa018785 Carpinus fangiana HOM05D007115 ORTHO05D008923 9.7e-76 287.3 214 71.5
Sc04g0000560 Simmondsia chinensis HOM05D007115 ORTHO05D008923 1.3e-75 287.0 221 68.3
Hma1.2p1_0014F.1_g009320 Hydrangea macrophylla HOM05D007115 ORTHO05D008923 2.2e-75 286.2 225 68.9
Atru.chr6.1807 Acer truncatum HOM05D007115 ORTHO05D008923 2.8e-75 285.8 205 73.7
Haze_07151 Corylus avellana HOM05D007115 ORTHO05D008923 3.7e-75 285.4 189 77.8
Dinv23157 Davidia involucrata HOM05D007115 ORTHO05D008923 4.8e-75 285.0 219 69.9
Actinidia25565 Actinidia chinensis HOM05D007115 ORTHO05D008923 1.4e-74 283.5 227 67.4
Rhsim08G0191000 Rhododendron simsii HOM05D007115 ORTHO05D008923 4.5e-73 278.5 203 70.4
CSS0028892 Camellia sinensis var. sinensis HOM05D007115 ORTHO05D008923 1.7e-72 276.6 220 68.6
CSS0028949 Camellia sinensis var. sinensis HOM05D007115 ORTHO05D008923 5.0e-72 275.0 220 67.7
Lj5A95G76 Lonicera japonica HOM05D007115 ORTHO05D008923 6.5e-72 274.6 192 72.4
Prupe.5G150000 Prunus persica HOM05D007115 ORTHO05D008923 6.5e-72 274.6 227 66.5
Ciclev10032623m.g Citrus clementina HOM05D007115 ORTHO05D008923 3.2e-71 272.3 220 67.3
Cpa.g.sc13.101 Carica papaya HOM05D007115 ORTHO05D008923 4.2e-71 271.9 200 70.0
Lsat_1_v5_gn_1_33120 Lactuca sativa HOM05D007115 ORTHO05D008923 1.6e-70 270.0 218 61.9
HanXRQChr02g0034681 Helianthus annuus HOM05D007115 ORTHO05D008923 2.1e-70 269.6 208 68.3
Oeu004998.1 Olea europaea HOM05D007115 ORTHO05D008923 2.1e-70 269.6 186 73.1
vmacro19121 Vaccinium macrocarpon HOM05D007115 ORTHO05D008923 2.1e-70 269.6 214 65.9
TWI39G0929 Tripterygium wilfordii HOM05D007115 ORTHO05D008923 2.7e-70 269.2 222 65.8
MD06G1140800 Malus domestica HOM05D007115 ORTHO05D008923 6.1e-70 268.1 225 64.9
Hund02448 Selenicereus undatus HOM05D007115 ORTHO05D008923 1.0e-69 267.3 208 64.9
RcHm_v2.0_Chr7g0190021 Rosa chinensis HOM05D007115 ORTHO05D008923 3.0e-69 265.8 221 64.7
FvH4_5g08420 Fragaria vesca HOM05D007115 ORTHO05D008923 3.9e-69 265.4 213 66.2
FAN04G1902 Fragaria x ananassa HOM05D007115 ORTHO05D008923 3.9e-69 265.4 193 70.5
FAN13G1038 Fragaria x ananassa HOM05D007115 ORTHO05D008923 3.9e-69 265.4 193 70.5
Thecc.03G130400 Theobroma cacao HOM05D007115 ORTHO05D008923 2.6e-68 262.7 228 64.5
Manes.14G050500 Manihot esculenta HOM05D007115 ORTHO05D008923 5.7e-68 261.5 186 72.0
GSVIVG01008566001 Vitis vinifera HOM05D007115 ORTHO05D008923 5.7e-68 261.5 227 63.9
CANSAT80G2203 Cannabis sativa HOM05D007115 ORTHO05D008923 7.4e-68 261.2 220 64.1
FAN08G1896 Fragaria x ananassa HOM05D007115 ORTHO05D008923 9.7e-68 260.8 193 69.4
Duzib205G1497 Durio zibethinus HOM05D007115 ORTHO05D008923 1.3e-67 260.4 221 67.4
PGSC0003DMG400015264 Solanum tuberosum HOM05D007115 ORTHO05D008923 1.7e-67 260.0 205 66.3
THA.LOC104811583 Tarenaya hassleriana HOM05D007115 ORTHO05D008923 1.7e-67 260.0 214 63.1
PGR083G2674 Punica granatum HOM05D007115 ORTHO05D008923 2.2e-67 259.6 172 73.3
ATR0790G002 Amborella trichopoda HOM05D007115 ORTHO05D008923 2.8e-67 259.2 224 61.2
FAN18G3505 Fragaria x ananassa HOM05D007115 ORTHO05D008923 2.8e-67 259.2 221 63.8
MELO3C002367.2 Cucumis melo HOM05D007115 ORTHO05D008923 4.8e-67 258.5 200 67.0
Nitab4.5_0000624g0110 Nicotiana tabacum HOM05D007115 ORTHO05D008923 1.8e-66 256.5 207 62.3
DCAR_007496 Daucus carota HOM05D007115 ORTHO05D008923 3.1e-66 255.8 218 62.8
Eucgr.B00101 Eucalyptus grandis HOM05D007115 ORTHO05D008923 3.1e-66 255.8 195 66.7
Sopen03g029960 Solanum pennellii HOM05D007115 ORTHO05D008923 3.1e-66 255.8 180 70.6
ClCG03G003830 Citrullus lanatus HOM05D007115 ORTHO05D008923 4.1e-66 255.4 199 66.8
CsaV3_1G009730 Cucumis sativus L. HOM05D007115 ORTHO05D008923 7.0e-66 254.6 199 66.3
Aqoxy5G03328 Aquilegia oxysepala HOM05D007115 ORTHO05D008923 9.1e-66 254.2 223 62.3
Solyc03g019660.4 Solanum lycopersicum HOM05D007115 ORTHO05D008923 9.1e-66 254.2 180 70.0
EL10Ac5g11401 Beta vulgaris HOM05D007115 ORTHO05D008923 1.6e-65 253.4 181 69.1
Nitab4.5_0001311g0160 Nicotiana tabacum HOM05D007115 ORTHO05D008923 4.5e-65 251.9 224 58.9
CDE02G1164 Ceratophyllum demersum HOM05D007115 ORTHO05D008923 3.8e-64 248.8 201 62.2
ECA247G2755 Erigeron canadensis HOM05D001512 ORTHO05D001574 6.5e-64 248.1 161 73.3
QL10p002688 Quercus lobata HOM05D007115 ORTHO05D008923 6.5e-64 248.1 280 53.6
CAN.G1611.7 Capsicum annuum HOM05D007115 ORTHO05D008923 3.2e-63 245.7 181 68.0
Carub.0007s1613 Capsella rubella HOM05D007115 ORTHO05D008923 4.2e-63 245.4 194 65.5
MSTRG.11273 Avicennia marina HOM05D007115 ORTHO05D008923 5.5e-63 245.0 187 67.9
AT4G24930 Arabidopsis thaliana HOM05D007115 ORTHO05D008923 7.2e-63 244.6 205 63.4
AL7G28270 Arabidopsis lyrata HOM05D007115 ORTHO05D008923 9.4e-63 244.2 216 62.0
CARHR232330 Cardamine hirsuta HOM05D007115 ORTHO05D008923 9.4e-63 244.2 193 66.3
AUR62034838 Chenopodium quinoa HOM05D007115 ORTHO05D008923 9.4e-63 244.2 172 68.6
Peaxi162Scf00089g00121 Petunia axillaris HOM05D007115 ORTHO05D008923 8.0e-62 241.1 192 64.1
Aa31LG7G10860 Aethionema arabicum HOM05D007115 ORTHO05D008923 1.4e-61 240.4 220 58.6
Thhalv10026135m.g Eutrema salsugineum HOM05D007115 ORTHO05D008923 8.8e-61 237.7 193 63.7
Gohir.D11G039800 Gossypium hirsutum HOM05D007115 ORTHO05D008923 8.8e-61 237.7 175 69.1
BcaNung06011 Brassica carinata HOM05D007115 ORTHO05D008923 1.5e-60 236.9 195 63.6
Migut.I00540 Erythranthe guttata HOM05D007115 ORTHO05D008923 2.6e-60 236.1 191 67.5
Gohir.A11G036350 Gossypium hirsutum HOM05D007115 ORTHO05D008923 2.6e-60 236.1 175 69.1
Gorai.007G042800 Gossypium raimondii HOM05D007115 ORTHO05D008923 9.7e-60 234.2 167 71.3
BolC1t01950H Brassica oleracea HOM05D007115 ORTHO05D008923 1.3e-59 233.8 190 63.7
PSO017G0512 Papaver somniferum HOM05D007115 ORTHO05D008923 3.7e-59 232.3 183 66.1
A01p16220 Brassica napus HOM05D007115 ORTHO05D008923 1.4e-58 230.3 222 56.3
BraA01t01558Z Brassica rapa HOM05D007115 ORTHO05D008923 1.4e-58 230.3 222 56.3
Cc04_g09720 Coffea canephora HOM05D007115 ORTHO05D008923 1.4e-58 230.3 202 62.4
unitig_8.g3030 Utricularia gibba HOM05D007115 ORTHO05D008923 1.8e-58 229.9 190 61.6
Sp7g22910 Schrenkiella parvula HOM05D007115 ORTHO05D008923 2.4e-58 229.6 190 63.7
Nn4g22293 Nelumbo nucifera HOM05D007115 ORTHO05D008923 9.1e-58 227.6 137 77.4
TAR622G0416 Trochodendron aralioides HOM05D007115 ORTHO05D008923 2.0e-57 226.5 134 79.1
C01p20210 Brassica napus HOM05D007115 ORTHO05D008923 3.5e-57 225.7 219 57.5
HPP92_023120 Vanilla planifolia HOM05D007115 ORTHO05D008923 1.0e-56 224.2 222 55.0
arahy.Tifrunner.gnm1.ann1.YTW6SU Arachis hypogaea HOM05D007115 ORTHO05D008923 3.8e-56 222.2 231 57.6
SalBow5G3672 Salvia bowleyana HOM05D007115 ORTHO05D008923 1.9e-55 219.9 218 57.8
SGA_v2.0_scaffold258G45802 Striga asiatica HOM05D007115 ORTHO05D008923 2.1e-54 216.5 242 52.1
Psat5g051920 Pisum sativum HOM05D007115 ORTHO05D008923 4.7e-54 215.3 145 82.8
Zm00001eb334110 Zea mays HOM05D007115 ORTHO05D008923 7.5e-44 181.4 155 59.4
arahy.Tifrunner.gnm1.ann1.BUY811 Arachis hypogaea HOM05D007115 ORTHO05D008923 6.3e-43 178.3 136 72.8
COL.COLO4_28141 Corchorus olitorius HOM05D007115 ORTHO05D008923 4.0e-37 159.1 99 77.8
Os01g0102300 Oryza sativa ssp. japonica HOM05D007115 ORTHO05D008923 5.7e-36 155.2 165 50.9
Pp3c6_23090 Physcomitrium patens HOM05D007115 ORTHO05D008923 9.8e-36 154.5 168 49.4
AUR62029602 Chenopodium quinoa HOM05D007115 ORTHO05D008923 2.2e-35 153.3 99 69.7
MBI11_g41395_MAGBIO Magnolia biondii HOM05D007115 ORTHO05D008923 1.5e-31 140.6 100 71.0
SMO356G0600 Selaginella moellendorffii HOM05D007115 ORTHO05D008923 3.7e-27 125.9 184 39.7
Actinidia18342 Actinidia chinensis HOM05D007115 ORTHO05D008923 3.1e-21 106.3 64 71.9
Sed0002696 Sechium edule HOM05D007115 ORTHO05D008923 4.0e-21 105.9 92 65.2
ATR0405G001 Amborella trichopoda HOM05D007115 ORTHO05D008923 6.8e-21 105.1 62 79.0
SEGI_00544 Sequoiadendron giganteum HOM05D007115 ORTHO05D008923 2.0e-20 103.6 107 50.5
Ah.02g114850 Amaranthus hybridus HOM05D007115 ORTHO05D008923 4.4e-20 102.4 136 48.5
FAN18G1815 Fragaria x ananassa HOM05D007115 ORTHO05D008923 1.6e-14 84.0 61 68.9
FAN13G2062 Fragaria x ananassa HOM05D007115 ORTHO05D008923 5.2e-13 79.0 56 71.4
AL6G46780 Arabidopsis lyrata HOM05D007115 ORTHO05D008923 6.8e-13 78.6 91 53.8
Sabra12G0072200 Salix brachista HOM05D007115 ORTHO05D008923 4.4e-12 75.9 61 62.3
Actinidia18341 Actinidia chinensis HOM05D000804 ORTHO05D000989 1.7e-11 73.9 113 46.9
PRCOL_00005130 Prasinoderma coloniale HOM05D003314 ORTHO05D004164 3.0e-08 63.2 177 26.6
FAN04G0070 Fragaria x ananassa HOM05D007115 ORTHO05D008923 1.1e-07 61.2 49 65.3


User provided reference genes

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