Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G14183 Trifolium pratense HOM05D005069 ORTHO05D006024 0.0e+00 2219.1 1099 100.0
Ca_10630_v3 Cicer arietinum L. HOM05D005069 ORTHO05D006024 0.0e+00 1969.5 1097 88.2
Medtr5g020160 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1928.3 1068 88.8
Psat1g155720 Pisum sativum HOM05D005069 ORTHO05D006024 0.0e+00 1926.8 1095 86.4
Medtr2g435850 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1919.4 1063 88.6
Medtr2g436170 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1919.4 1063 88.6
Phvul.009G250200 Phaseolus vulgaris HOM05D005069 ORTHO05D006024 0.0e+00 1735.3 1059 80.3
Glyma.09G042600 Glycine max HOM05D005069 ORTHO05D006024 0.0e+00 1712.2 1061 79.3
Lj6g0024094 Lotus japonicus HOM05D005069 ORTHO05D006024 0.0e+00 1711.4 1044 80.8
VMungo1309G0850 Vigna mungo HOM05D005069 ORTHO05D006024 0.0e+00 1694.1 1058 78.6
arahy.Tifrunner.gnm1.ann1.9CA2Y1 Arachis hypogaea HOM05D005069 ORTHO05D006024 0.0e+00 1527.7 1067 70.9
Glyma.15G192400 Glycine max HOM05D005069 ORTHO05D006024 0.0e+00 1521.5 926 80.5
arahy.Tifrunner.gnm1.ann1.I5RJVP Arachis hypogaea HOM05D005069 ORTHO05D006024 0.0e+00 1515.7 1067 70.7
QL06p010168 Quercus lobata HOM05D005069 ORTHO05D006024 0.0e+00 1417.1 1092 64.5
Cfa015421 Carpinus fangiana HOM05D005069 ORTHO05D006024 0.0e+00 1409.8 1075 64.6
CiPaw.02G080300 Carya illinoinensis HOM05D005069 ORTHO05D006024 0.0e+00 1402.1 1078 64.7
Prupe.1G132400 Prunus persica HOM05D005069 ORTHO05D006024 0.0e+00 1328.9 1089 61.2
RcHm_v2.0_Chr4g0423171 Rosa chinensis HOM05D005069 ORTHO05D006024 0.0e+00 1319.7 1093 60.9
Duzib151G0715 Durio zibethinus HOM05D005069 ORTHO05D006024 0.0e+00 1302.0 1081 61.1
Haze_01171 Corylus avellana HOM05D005069 ORTHO05D006024 0.0e+00 1295.0 1110 60.0
FAN12G2768 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1283.5 1124 58.4
GSVIVG01035118001 Vitis vinifera HOM05D005069 ORTHO05D006024 0.0e+00 1283.5 1083 60.7
Atru.chr4.2893 Acer truncatum HOM05D005069 ORTHO05D006024 0.0e+00 1280.0 1104 59.2
FAN07G0695 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1278.8 1070 60.7
Sabra07G0100800 Salix brachista HOM05D005069 ORTHO05D006024 0.0e+00 1264.2 1092 57.5
Actinidia40297 Actinidia chinensis HOM05D005069 ORTHO05D006024 0.0e+00 1245.0 1066 59.8
Potri.007G124900 Populus trichocarpa HOM05D005069 ORTHO05D006024 0.0e+00 1245.0 1087 57.1
Ciclev10007186m.g Citrus clementina HOM05D005069 ORTHO05D006024 0.0e+00 1241.1 1114 58.0
TWI09G0094 Tripterygium wilfordii HOM05D005069 ORTHO05D006024 0.0e+00 1230.7 1081 59.1
Gorai.005G061500 Gossypium raimondii HOM05D005069 ORTHO05D006024 0.0e+00 1223.8 1068 57.4
Gohir.A02G050600 Gossypium hirsutum HOM05D005069 ORTHO05D006024 0.0e+00 1215.3 1064 57.2
Lj6C680G7 Lonicera japonica HOM05D005069 ORTHO05D006024 0.0e+00 1213.7 1118 57.1
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 0.0e+00 1210.7 1043 59.0
Cpa.g.sc50.170 Carica papaya HOM05D005069 ORTHO05D006024 0.0e+00 1209.9 1071 57.0
Eucgr.H03956 Eucalyptus grandis HOM05D005069 ORTHO05D006024 0.0e+00 1193.7 1069 57.2
Rhsim04G0224900 Rhododendron simsii HOM05D005069 ORTHO05D006024 0.0e+00 1191.8 1127 54.6
PGR004G1871 Punica granatum HOM05D005069 ORTHO05D006024 0.0e+00 1191.0 1078 55.8
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1186.8 998 59.8
Aqoxy2G02916 Aquilegia oxysepala HOM05D005069 ORTHO05D006024 0.0e+00 1183.7 1082 55.1
Manes.04G040225 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1173.3 1095 55.0
FAN17G1646 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1170.2 1028 58.9
Lalb_Chr15g0086031 Lupinus albus HOM05D005069 ORTHO05D006024 0.0e+00 1168.3 755 77.5
THA.LOC104818914 Tarenaya hassleriana HOM05D005069 ORTHO05D006024 0.0e+00 1163.7 1055 55.5
AL8G22670 Arabidopsis lyrata HOM05D005069 ORTHO05D006024 0.0e+00 1152.9 1054 55.1
AT5G49150 Arabidopsis thaliana HOM05D005069 ORTHO05D006024 0.0e+00 1150.6 1080 54.1
Nitab4.5_0000695g0020 Nicotiana tabacum HOM05D005069 ORTHO05D006024 0.0e+00 1145.6 1089 53.3
Carub.0008s0895 Capsella rubella HOM05D005069 ORTHO05D006024 0.0e+00 1139.4 1027 55.2
vmacro08181 Vaccinium macrocarpon HOM05D005069 ORTHO05D006024 0.0e+00 1136.3 1152 51.6
Peaxi162Scf00065g01432 Petunia axillaris HOM05D005069 ORTHO05D006024 0.0e+00 1131.3 1084 53.4
CAN.G1639.1 Capsicum annuum HOM05D005069 ORTHO05D006024 0.0e+00 1127.9 1067 53.9
Nitab4.5_0006814g0030 Nicotiana tabacum HOM05D005069 ORTHO05D006024 0.0e+00 1124.4 1125 51.6
BraA02t08774Z Brassica rapa HOM05D005069 ORTHO05D006024 0.0e+00 1117.1 1059 53.4
Manes.04G045344 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1116.7 1096 53.0
BcaC03g17701 Brassica carinata HOM05D005069 ORTHO05D006024 0.0e+00 1108.2 1056 53.1
BolC2t11776H Brassica oleracea HOM05D005069 ORTHO05D006024 0.0e+00 1106.3 1056 53.2
Manes.04G046272 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1106.3 1061 53.7
PSO170G2573 Papaver somniferum HOM05D005069 ORTHO05D006024 0.0e+00 1106.3 1095 52.0
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 0.0e+00 1104.7 1058 53.0
A02p37900 Brassica napus HOM05D005069 ORTHO05D006024 0.0e+00 1103.2 1052 53.6
Solyc01g066510.3 Solanum lycopersicum HOM05D005069 ORTHO05D006024 0.0e+00 1099.7 1108 51.3
AUR62018094 Chenopodium quinoa HOM05D005069 ORTHO05D006024 0.0e+00 1096.3 1071 52.0
Thhalv10005444m.g Eutrema salsugineum HOM05D005069 ORTHO05D006024 0.0e+00 1095.9 982 54.7
Aa31LG11G8390 Aethionema arabicum HOM05D005069 ORTHO05D006024 0.0e+00 1092.8 1040 52.7
PSO407G0255 Papaver somniferum HOM05D005069 ORTHO05D006024 0.0e+00 1091.6 1083 52.1
AUR62032020 Chenopodium quinoa HOM05D005069 ORTHO05D006024 0.0e+00 1085.1 1113 50.5
Manes.04G046000 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1077.0 1109 51.8
Cc03_g01590 Coffea canephora HOM05D005069 ORTHO05D006024 1.2e-307 1060.1 957 54.9
Dinv29734 Davidia involucrata HOM05D005069 ORTHO05D006024 1.5e-307 1059.7 874 61.2
Migut.G00133 Erythranthe guttata HOM05D005069 ORTHO05D006024 3.4e-307 1058.5 1059 51.6
DCAR_023295 Daucus carota HOM05D005069 ORTHO05D006024 2.3e-303 1045.8 1100 50.2
SGA_v2.0_scaffold67G22603 Striga asiatica HOM05D005069 ORTHO05D006024 1.3e-301 1040.0 1031 52.2
EL10Ac3g06634 Beta vulgaris HOM05D005069 ORTHO05D006024 6.1e-296 1021.1 991 51.4
SalBow2G1933 Salvia bowleyana HOM05D005069 ORTHO05D006024 3.3e-294 1015.4 1021 50.7
CARHR186440 Cardamine hirsuta HOM05D005069 ORTHO05D006024 9.1e-292 1007.3 898 55.6
FvH4_4g18570 Fragaria vesca HOM05D005069 ORTHO05D006024 3.8e-290 1001.9 838 61.2
Sp2g19500 Schrenkiella parvula HOM05D005069 ORTHO05D006024 4.7e-288 995.0 918 54.1
Ah.00g238040 Amaranthus hybridus HOM05D005069 ORTHO05D006024 3.0e-287 992.3 1062 48.2
Nn3g21533 Nelumbo nucifera HOM05D005069 ORTHO05D006024 1.5e-286 989.9 874 58.7
CANSAT78G0554 Cannabis sativa HOM05D005069 ORTHO05D006024 5.7e-286 988.0 775 62.2
Hund20526 Selenicereus undatus HOM05D005069 ORTHO05D006024 8.0e-280 967.6 1122 46.5
CSS0043552 Camellia sinensis var. sinensis HOM05D005069 ORTHO05D006024 5.8e-270 934.9 921 53.4
HPP92_022450 Vanilla planifolia HOM05D005069 ORTHO05D006024 1.1e-268 930.6 1070 46.3
Lsat_1_v5_gn_6_96300 Lactuca sativa HOM05D005069 ORTHO05D006024 4.1e-268 928.7 1076 45.8
ATR0580G217 Amborella trichopoda HOM05D005069 ORTHO05D006024 1.1e-257 894.0 1096 45.3
MBI15_g07480_MAGBIO Magnolia biondii HOM05D005069 ORTHO05D006024 9.9e-254 880.9 1079 46.7
Migut.G00081 Erythranthe guttata HOM05D005069 ORTHO05D006024 2.2e-237 826.6 911 47.9
TAR636G0683 Trochodendron aralioides HOM05D005069 ORTHO05D006024 2.2e-237 826.6 696 59.6
HanXRQChr03g0089541 Helianthus annuus HOM05D005069 ORTHO05D006024 5.4e-228 795.4 994 42.5
Oeu035688.1 Olea europaea HOM05D005069 ORTHO05D006024 1.1e-225 787.7 733 55.9
Zm00001eb099800 Zea mays HOM05D005069 ORTHO05D006024 1.2e-219 767.7 1085 40.4
Sopen01g028200 Solanum pennellii HOM05D005069 ORTHO05D006024 5.6e-217 758.8 739 51.8
Manes.04G046718 Manihot esculenta HOM05D005069 ORTHO05D006024 4.0e-215 752.7 672 55.8
Hma1.2p1_0078F.1_g040620 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 2.7e-211 740.0 552 65.0
Sc13g0003270 Simmondsia chinensis HOM05D005069 ORTHO05D006024 1.5e-201 707.6 639 55.2
ECA240G4151 Erigeron canadensis HOM05D005069 ORTHO05D006024 6.3e-200 702.2 1062 39.2
CDE02G3967 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 4.8e-176 622.9 647 49.6
Thecc.04G288100 Theobroma cacao HOM05D005069 ORTHO05D006024 1.7e-160 571.2 487 58.9
HanXRQChr03g0089561 Helianthus annuus HOM05D005069 ORTHO05D006024 8.0e-155 552.4 616 46.1
Thecc.04G288200 Theobroma cacao HOM05D005069 ORTHO05D006024 4.0e-130 470.3 370 62.4
TAR636G0082 Trochodendron aralioides HOM05D005069 ORTHO05D006024 1.1e-124 452.2 364 62.9
TPR.G29612 Trifolium pratense HOM05D005069 ORTHO05D006024 1.3e-107 395.6 208 93.3
SHI26096 Sapria himalayana HOM05D005069 ORTHO05D006024 1.6e-102 378.6 386 49.5
Sc13g0003280 Simmondsia chinensis HOM05D005069 ORTHO05D006024 1.2e-94 352.4 351 51.0
Gohir.D02G055533 Gossypium hirsutum HOM05D005069 ORTHO05D006024 1.0e-80 306.2 217 66.8
Lalb_Chr15g0086041 Lupinus albus HOM05D005069 ORTHO05D006024 2.2e-80 305.1 192 77.6
SMO174G0176 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 7.9e-78 296.6 1047 26.4
Manes.04G046727 Manihot esculenta HOM05D005069 ORTHO05D006024 5.1e-77 293.9 220 64.1
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 2.7e-70 271.6 223 57.4
HanXRQChr03g0089551 Helianthus annuus HOM05D005069 ORTHO05D006024 6.3e-67 260.4 319 42.3
Sabra07G0101000 Salix brachista HOM05D005069 ORTHO05D006024 1.2e-62 246.1 261 47.9
Hma1.2p1_1659F.1_g296120 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 2.2e-56 225.3 198 59.6
Hma1.2p1_0139F.1_g063315 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 4.2e-55 221.1 198 58.6
Hma1.2p1_0139F.1_g063320 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 2.1e-54 218.8 198 58.6
Gohir.D02G055566 Gossypium hirsutum HOM05D005069 ORTHO05D006024 3.7e-51 208.0 184 57.1
SHI34756 Sapria himalayana HOM05D005069 ORTHO05D006024 1.7e-48 199.1 368 31.8
AagrBONN_evm.TU.Sc2ySwM_340.311 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.5e-47 196.1 911 23.9
Lalb_Chr15g0086021 Lupinus albus HOM05D005069 ORTHO05D006024 4.0e-45 188.0 135 67.4
SHI26092 Sapria himalayana HOM05D005069 ORTHO05D006024 2.4e-42 178.7 130 64.6
Os09g0424701 Oryza sativa ssp. japonica HOM05D005069 ORTHO05D006024 3.0e-40 171.8 206 40.8
TPR.G9115 Trifolium pratense HOM05D005069 ORTHO05D006024 1.0e-37 163.3 84 92.9
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 1.4e-37 162.9 131 57.3
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 1.7e-35 156.0 130 56.2
CDE02G3730 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 2.9e-35 155.2 115 59.1
SHI26089 Sapria himalayana HOM05D005069 ORTHO05D006024 9.2e-34 150.2 125 60.0
AagrBONN_evm.TU.Sc2ySwM_228.988 Anthoceros agrestis HOM05D005069 ORTHO05D006024 3.9e-32 144.8 1016 22.9
Lsat_1_v5_gn_8_152101 Lactuca sativa HOM05D005069 ORTHO05D006024 5.0e-32 144.4 154 46.1
TPR.G8658 Trifolium pratense HOM05D005069 ORTHO05D006024 4.7e-30 137.9 302 35.4
SMO347G0277 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 2.0e-28 132.5 387 27.9
Mapoly0125s0024 Marchantia polymorpha HOM05D005069 ORTHO05D006024 2.6e-28 132.1 470 22.8
BcaC03g17698 Brassica carinata HOM05D005069 ORTHO05D006024 6.4e-27 127.5 129 48.8
Hma1.2p1_0078F.1_g040610 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 7.1e-26 124.0 128 51.6
SMO111G0104 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 2.6e-20 105.5 565 22.8
SMO109G0005 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 4.4e-20 104.8 458 23.4
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 3.7e-19 101.7 93 49.5
Lsat_1_v5_gn_2_33340 Lactuca sativa HOM05D005069 ORTHO05D006024 8.4e-19 100.5 82 52.4
BcaC06g30714 Brassica carinata HOM05D005069 ORTHO05D006024 3.1e-13 82.0 92 41.3
BcaC05g26383 Brassica carinata HOM05D005069 ORTHO05D006024 4.0e-13 81.6 58 62.1
C05p24130 Brassica napus HOM05D005069 ORTHO05D006024 1.2e-12 80.1 58 60.3
AagrBONN_evm.TU.Sc2ySwM_340.310 Anthoceros agrestis HOM05D005069 ORTHO05D006024 5.8e-12 77.8 268 23.5
AagrBONN_evm.TU.Sc2ySwM_340.307 Anthoceros agrestis HOM05D005069 ORTHO05D006024 8.4e-11 73.9 224 25.0
AagrBONN_evm.TU.Sc2ySwM_344.2936 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.1e-10 73.6 345 22.0
CARHR285990 Cardamine hirsuta HOM05D005069 ORTHO05D006024 7.1e-10 70.9 57 54.4
CARHR286020 Cardamine hirsuta HOM05D005069 ORTHO05D006024 2.7e-09 68.9 100 39.0
CARHR286010 Cardamine hirsuta HOM05D005069 ORTHO05D006024 8.1e-06 57.4 74 43.2


User provided reference genes

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