Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G14159 Trifolium pratense HOM05D005023 ORTHO05D006009 3.1e-176 621.7 316 100.0
Medtr8g066330 Medicago truncatula HOM05D005023 ORTHO05D006009 3.1e-152 542.0 314 86.6
Ca_22661_v3 Cicer arietinum L. HOM05D005023 ORTHO05D006009 1.2e-148 530.0 316 83.5
Psat4g122680 Pisum sativum HOM05D005023 ORTHO05D006009 4.2e-133 478.4 275 85.1
Psat4g122280 Pisum sativum HOM05D005023 ORTHO05D006009 2.2e-129 466.1 261 89.3
Lalb_Chr25g0286701 Lupinus albus HOM05D005023 ORTHO05D006009 2.5e-125 452.6 308 72.4
Lj6g0028231 Lotus japonicus HOM05D005023 ORTHO05D006009 7.2e-125 451.1 310 73.5
TPR.G3350 Trifolium pratense HOM05D005023 ORTHO05D006009 4.1e-120 435.3 245 91.4
arahy.Tifrunner.gnm1.ann1.NK2KWA Arachis hypogaea HOM05D005023 ORTHO05D006009 1.3e-110 403.7 314 66.6
arahy.Tifrunner.gnm1.ann1.6CH5L4 Arachis hypogaea HOM05D005023 ORTHO05D006009 1.7e-110 403.3 314 66.2
arahy.Tifrunner.gnm1.ann1.J93PEP Arachis hypogaea HOM05D005023 ORTHO05D006009 1.8e-107 393.3 314 64.6
Phvul.009G009200 Phaseolus vulgaris HOM05D005023 ORTHO05D006009 5.2e-107 391.7 300 68.0
Glyma.06G013600 Glycine max HOM05D005023 ORTHO05D006009 1.1e-99 367.5 302 64.9
Glyma.04G013700 Glycine max HOM05D005023 ORTHO05D006009 4.1e-96 355.5 306 63.7
arahy.Tifrunner.gnm1.ann1.GAHP45 Arachis hypogaea HOM05D005023 ORTHO05D006009 1.1e-85 320.9 283 59.4
Cfa012488 Carpinus fangiana HOM05D005023 ORTHO05D006009 3.1e-83 312.8 323 52.9
QL12p004398 Quercus lobata HOM05D005023 ORTHO05D006009 2.0e-82 310.1 318 52.2
RcHm_v2.0_Chr7g0211361 Rosa chinensis HOM05D005023 ORTHO05D006009 6.0e-79 298.5 311 51.1
FAN08G0704 Fragaria x ananassa HOM05D005023 ORTHO05D006009 8.1e-76 288.1 305 50.8
CiPaw.11G096900 Carya illinoinensis HOM05D005023 ORTHO05D006009 2.4e-75 286.6 316 50.3
Potri.003G095200 Populus trichocarpa HOM05D005023 ORTHO05D006009 2.4e-75 286.6 319 48.0
COL.COLO4_16967 Corchorus olitorius HOM05D005023 ORTHO05D006009 6.9e-75 285.0 318 48.4
Thecc.03G307500 Theobroma cacao HOM05D005023 ORTHO05D006009 6.9e-75 285.0 321 48.9
Ciclev10016033m.g Citrus clementina HOM05D005023 ORTHO05D006009 1.5e-74 283.9 313 50.5
FvH4_5g22760 Fragaria vesca HOM05D005023 ORTHO05D006009 5.8e-74 282.0 305 49.8
FAN18G3597 Fragaria x ananassa HOM05D005023 ORTHO05D006009 5.8e-74 282.0 305 49.8
FAN13G2198 Fragaria x ananassa HOM05D005023 ORTHO05D006009 9.9e-74 281.2 305 49.5
FAN13G2978 Fragaria x ananassa HOM05D005023 ORTHO05D006009 9.9e-74 281.2 305 49.5
Prupe.5G030700 Prunus persica HOM05D005023 ORTHO05D006009 9.9e-74 281.2 323 47.7
Duzib084G0965 Durio zibethinus HOM05D005023 ORTHO05D006009 2.9e-73 279.6 295 51.5
FAN18G4268 Fragaria x ananassa HOM05D005023 ORTHO05D006009 2.9e-73 279.6 305 49.5
TWI60G0688 Tripterygium wilfordii HOM05D005023 ORTHO05D006009 4.2e-72 275.8 271 52.0
MD06G1038100 Malus domestica HOM05D005023 ORTHO05D006009 2.1e-71 273.5 304 48.0
GSVIVG01013101001 Vitis vinifera HOM05D005023 ORTHO05D006009 3.5e-71 272.7 317 47.9
Manes.02G223400 Manihot esculenta HOM05D005023 ORTHO05D006009 2.3e-70 270.0 316 47.2
Atru.chr12.846 Acer truncatum HOM05D005023 ORTHO05D006009 3.0e-70 269.6 280 50.7
Aqoxy1G01584 Aquilegia oxysepala HOM05D005023 ORTHO05D006009 2.5e-69 266.5 265 50.9
CANSAT54G0648 Cannabis sativa HOM05D005023 ORTHO05D006009 5.6e-69 265.4 310 46.5
Dinv28986 Davidia involucrata HOM05D005023 ORTHO05D006009 5.6e-69 265.4 306 48.4
Haze_08177 Corylus avellana HOM05D005023 ORTHO05D006009 1.6e-68 263.8 244 54.9
Cpa.g.sc90.15 Carica papaya HOM05D005023 ORTHO05D006009 3.7e-68 262.7 276 49.6
Gohir.A12G206900 Gossypium hirsutum HOM05D005023 ORTHO05D006009 4.5e-66 255.8 262 50.4
Sabra01G0107600 Salix brachista HOM05D005023 ORTHO05D006009 4.5e-66 255.8 289 48.4
Gorai.008G224900 Gossypium raimondii HOM05D005023 ORTHO05D006009 7.6e-66 255.0 262 50.8
Gohir.D12G209350 Gossypium hirsutum HOM05D005023 ORTHO05D006009 1.3e-65 254.2 262 50.8
FAN04G1126 Fragaria x ananassa HOM05D005023 ORTHO05D006009 2.2e-65 253.4 262 51.9
Hma1.2p1_2161F.1_g315620 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 2.7e-63 246.5 309 47.6
PSO170G6706 Papaver somniferum HOM05D005023 ORTHO05D006009 3.5e-63 246.1 264 48.5
PSO302G0152 Papaver somniferum HOM05D005023 ORTHO05D006009 4.6e-63 245.7 264 49.6
PGSC0003DMG400014810 Solanum tuberosum HOM05D005023 ORTHO05D006009 1.8e-62 243.8 265 49.4
DCAR_031128 Daucus carota HOM05D005023 ORTHO05D006009 2.3e-62 243.4 264 48.1
Actinidia09175 Actinidia chinensis HOM05D005023 ORTHO05D006009 3.9e-62 242.7 289 46.0
Sabra03G0064200 Salix brachista HOM05D005023 ORTHO05D006009 8.7e-62 241.5 244 52.5
Solyc08g076570.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 1.1e-61 241.1 265 49.4
CSS0008599 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 1.6e-60 237.3 309 43.0
ClCG04G001320 Citrullus lanatus HOM05D005023 ORTHO05D006009 1.6e-60 237.3 311 44.7
Sopen08g025130 Solanum pennellii HOM05D005023 ORTHO05D006009 2.1e-60 236.9 265 48.7
CAN.G298.60 Capsicum annuum HOM05D005023 ORTHO05D006009 1.1e-59 234.6 262 47.7
CAN.G298.61 Capsicum annuum HOM05D005023 ORTHO05D006009 1.1e-59 234.6 262 47.7
CAN.G726.32 Capsicum annuum HOM05D005023 ORTHO05D006009 1.1e-59 234.6 262 47.7
Lsat_1_v5_gn_6_80180 Lactuca sativa HOM05D005023 ORTHO05D006009 1.4e-59 234.2 284 42.6
Peaxi162Scf00170g00918 Petunia axillaris HOM05D005023 ORTHO05D006009 4.1e-59 232.6 268 47.8
vmacro00304 Vaccinium macrocarpon HOM05D005023 ORTHO05D006009 6.9e-59 231.9 243 51.0
Nitab4.5_0002380g0110 Nicotiana tabacum HOM05D005023 ORTHO05D006009 1.2e-58 231.1 263 47.5
Sed0002054 Sechium edule HOM05D005023 ORTHO05D006009 1.5e-58 230.7 315 42.9
Eucgr.E00250 Eucalyptus grandis HOM05D005023 ORTHO05D006009 2.2e-57 226.9 290 42.1
Actinidia25987 Actinidia chinensis HOM05D005023 ORTHO05D006009 2.9e-57 226.5 251 47.0
PSO782G3892 Papaver somniferum HOM05D005023 ORTHO05D006009 5.0e-57 225.7 266 45.1
Nitab4.5_0000353g0050 Nicotiana tabacum HOM05D005023 ORTHO05D006009 2.5e-56 223.4 253 47.8
Nitab4.5_0004669g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 2.5e-56 223.4 253 48.2
ECA240G3323 Erigeron canadensis HOM05D005023 ORTHO05D006009 3.2e-56 223.0 260 45.0
MBI02_g28332_MAGBIO Magnolia biondii HOM05D005023 ORTHO05D006009 3.2e-56 223.0 317 43.8
Cc08_g03230 Coffea canephora HOM05D005023 ORTHO05D006009 4.2e-56 222.6 270 46.3
PGR042G2438 Punica granatum HOM05D005023 ORTHO05D006009 6.1e-55 218.8 261 42.1
Nitab4.5_0004839g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 7.9e-55 218.4 251 47.0
AUR62033976 Chenopodium quinoa HOM05D005023 ORTHO05D006009 1.8e-54 217.2 263 46.8
MSTRG.1995 Avicennia marina HOM05D005023 ORTHO05D006009 3.9e-54 216.1 265 46.0
Lj2A234G45 Lonicera japonica HOM05D005023 ORTHO05D006009 6.7e-54 215.3 311 42.4
CsaV3_1G033210 Cucumis sativus L. HOM05D000021 ORTHO05D000010 1.9e-53 213.8 282 43.3
Rhsim07G0130800 Rhododendron simsii HOM05D005023 ORTHO05D006009 5.7e-53 212.2 296 42.2
EL10Ac8g19220 Beta vulgaris HOM05D005023 ORTHO05D006009 2.2e-52 210.3 263 44.9
HanXRQChr03g0083581 Helianthus annuus HOM05D005023 ORTHO05D006009 3.7e-52 209.5 263 41.1
Nn7g38116 Nelumbo nucifera HOM05D005023 ORTHO05D006009 3.7e-52 209.5 318 39.9
AL8G11450 Arabidopsis lyrata HOM05D005023 ORTHO05D006009 1.1e-51 208.0 299 43.5
Hund11209 Selenicereus undatus HOM05D005023 ORTHO05D006009 1.1e-51 208.0 295 44.4
Ah.12g065340 Amaranthus hybridus HOM05D005023 ORTHO05D006009 9.0e-51 204.9 251 45.8
SGA_v2.0_scaffold6G03150 Striga asiatica HOM05D005023 ORTHO05D006009 7.7e-50 201.8 291 39.9
Migut.E00780 Erythranthe guttata HOM05D005023 ORTHO05D006009 1.7e-49 200.7 265 42.3
SalBow6G6255 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.8e-49 199.5 254 44.9
SalBow6G4088 Salvia bowleyana HOM05D005023 ORTHO05D006009 8.5e-49 198.4 251 45.4
BcaC06g31439 Brassica carinata HOM05D005023 ORTHO05D006009 1.4e-48 197.6 291 42.6
AT5G46850 Arabidopsis thaliana HOM05D005023 ORTHO05D006009 1.9e-48 197.2 295 42.0
Sp2g11650 Schrenkiella parvula HOM05D005023 ORTHO05D006009 1.9e-48 197.2 279 45.2
SalBow6G3389 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.5e-48 196.8 252 44.8
SalBow6G2872 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.2e-48 196.4 252 44.8
SalBow6G3524 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.2e-48 196.4 252 44.8
Aa31sc182G50 Aethionema arabicum HOM05D005023 ORTHO05D006009 4.2e-48 196.1 287 41.8
SalBow6G3383 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.5e-48 195.7 252 44.4
SalBow6G4332 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.5e-48 195.7 252 44.8
SalBow6G6227 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.5e-48 195.7 252 44.4
SalBow8G0269 Salvia bowleyana HOM05D005023 ORTHO05D006009 7.2e-48 195.3 263 43.3
SalBow6G1717 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.2e-47 194.5 252 44.4
SalBow6G6031 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.6e-47 194.1 252 44.8
SalBow6G6846 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.7e-47 193.4 252 44.8
THA.LOC104806696 Tarenaya hassleriana HOM05D005023 ORTHO05D006009 3.6e-47 193.0 303 41.3
CARHR174600 Cardamine hirsuta HOM05D005023 ORTHO05D006009 6.1e-47 192.2 282 44.0
A06p45570 Brassica napus HOM05D005023 ORTHO05D006009 5.1e-46 189.1 252 43.7
Thhalv10000976m.g Eutrema salsugineum HOM05D005023 ORTHO05D006009 5.1e-46 189.1 262 44.7
BraA06t27429Z Brassica rapa HOM05D005023 ORTHO05D006009 8.8e-46 188.3 290 40.3
PSO063G5178 Papaver somniferum HOM05D005023 ORTHO05D006009 2.0e-45 187.2 190 52.1
Carub.0008s0106 Capsella rubella HOM05D005023 ORTHO05D006009 4.3e-45 186.0 263 44.1
BcaC06g34337 Brassica carinata HOM05D005023 ORTHO05D006009 1.7e-44 184.1 253 43.5
C07p30210 Brassica napus HOM05D005023 ORTHO05D006009 1.7e-44 184.1 253 43.5
SalBow6G3781 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.2e-44 183.7 239 45.6
BolC7t43557H Brassica oleracea HOM05D005023 ORTHO05D006009 1.8e-43 180.6 253 42.7
Os12g0596900 Oryza sativa ssp. japonica HOM05D005023 ORTHO05D006009 6.9e-43 178.7 277 39.4
CDE02G4581 Ceratophyllum demersum HOM05D005023 ORTHO05D006009 1.0e-41 174.9 313 37.4
Hma1.2p1_1594F.1_g292650 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 1.1e-40 171.4 218 49.5
MELO3C033076.2 Cucumis melo HOM05D005023 ORTHO05D006009 3.2e-40 169.9 254 40.9
SHI20240 Sapria himalayana HOM05D000452 ORTHO05D000647 1.2e-39 167.9 258 38.4
Zm00001eb030880 Zea mays HOM05D005023 ORTHO05D006009 6.1e-39 165.6 281 37.7
Sc01g0007280 Simmondsia chinensis HOM05D005023 ORTHO05D006009 1.4e-38 164.5 263 40.3
Hma1.2p1_2161F.1_g315630 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 3.0e-38 163.3 156 57.1
HPP92_014902 Vanilla planifolia HOM05D005023 ORTHO05D006009 5.7e-37 159.1 245 38.4
HPP92_014897 Vanilla planifolia HOM05D005023 ORTHO05D006009 7.4e-37 158.7 245 39.2
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 1.3e-36 157.9 209 44.5
SalBow6G5471 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.7e-36 156.4 184 45.7
SalBow6G0983 Salvia bowleyana HOM05D005023 ORTHO05D006009 6.3e-36 155.6 165 48.5
SalBow6G0969 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.1e-35 153.3 165 48.5
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 2.6e-34 150.2 198 39.4
SalBow6G1311 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.6e-34 150.2 165 47.9
Actinidia09177 Actinidia chinensis HOM05D005023 ORTHO05D006009 1.5e-29 134.4 254 35.0
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 5.7e-29 132.5 174 42.5
SalBow6G6268 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.5e-26 122.9 169 45.0
Hma1.2p1_0572F.1_g181170 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 1.7e-25 120.9 129 54.3
SalBow6G0951 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.2e-22 109.4 143 45.5
MELO3C011047.2 Cucumis melo HOM05D005023 ORTHO05D006009 3.7e-20 103.2 102 51.0
Mapoly0088s0063 Marchantia polymorpha HOM05D005023 ORTHO05D006009 1.1e-19 101.7 199 31.7
SMO358G0075 Selaginella moellendorffii HOM05D005023 ORTHO05D006009 1.7e-17 94.4 196 32.1
Pp3c13_7870 Physcomitrium patens HOM05D005023 ORTHO05D006009 6.5e-17 92.4 213 31.5
TAR375G0008 Trochodendron aralioides HOM05D005023 ORTHO05D006009 1.1e-16 91.7 229 31.0
CSS0036970 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 1.6e-10 71.2 91 37.4
AagrBONN_evm.TU.Sc2ySwM_344.1294 Anthoceros agrestis HOM05D005023 ORTHO05D006009 5.0e-09 66.2 156 28.8
SEGI_33873 Sequoiadendron giganteum HOM05D005023 ORTHO05D006009 3.6e-07 60.1 94 38.3


User provided reference genes

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