Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G14145 Trifolium pratense HOM05D006926 ORTHO05D008863 2.9e-134 483.8 240 100.0
TPR.G14143 Trifolium pratense HOM05D006926 ORTHO05D008863 3.9e-123 446.8 235 93.2
Medtr5g095130 Medicago truncatula HOM05D006926 ORTHO05D008863 1.7e-110 404.8 239 84.5
Psat2g008440 Pisum sativum HOM05D006926 ORTHO05D008863 8.5e-102 375.9 237 79.7
VMungo0647G0525 Vigna mungo HOM05D006926 ORTHO05D008863 1.8e-75 288.5 227 67.0
arahy.Tifrunner.gnm1.ann1.R7Y0VJ Arachis hypogaea HOM05D006926 ORTHO05D008863 1.2e-71 275.8 225 64.9
arahy.Tifrunner.gnm1.ann1.DI2NU4 Arachis hypogaea HOM05D006926 ORTHO05D008863 2.5e-69 268.1 218 64.2
Lj9C380T3 Lonicera japonica HOM05D006926 ORTHO05D008863 9.8e-66 256.1 238 56.3
Lalb_Chr17g0348851 Lupinus albus HOM05D006926 ORTHO05D008863 2.7e-63 248.1 224 57.1
Cfa015391 Carpinus fangiana HOM05D006926 ORTHO05D008863 1.3e-62 245.7 221 54.8
QL06p009008 Quercus lobata HOM05D006926 ORTHO05D008863 5.0e-62 243.8 230 55.2
Manes.03G195800 Manihot esculenta HOM05D006926 ORTHO05D008863 6.6e-62 243.4 231 55.8
Sabra10G0009000 Salix brachista HOM05D006926 ORTHO05D008863 1.1e-61 242.7 217 57.6
Duzib151G0724 Durio zibethinus HOM05D006926 ORTHO05D008863 2.5e-61 241.5 213 57.7
LjContig00081g0009495 Lotus japonicus HOM05D006926 ORTHO05D008863 2.5e-61 241.5 196 66.8
Prupe.1G135500 Prunus persica HOM05D006926 ORTHO05D008863 2.5e-61 241.5 237 54.4
Haze_01195 Corylus avellana HOM05D006926 ORTHO05D008863 9.5e-61 239.6 190 59.5
TAR365G0466 Trochodendron aralioides HOM05D006926 ORTHO05D008863 1.6e-60 238.8 229 57.2
Potri.010G014100 Populus trichocarpa HOM05D006926 ORTHO05D008863 1.1e-59 236.1 217 55.8
Cpa.g.sc16.177 Carica papaya HOM05D006926 ORTHO05D008863 2.3e-59 235.0 205 56.6
Phvul.008G277600 Phaseolus vulgaris HOM05D006926 ORTHO05D008863 4.0e-59 234.2 183 66.1
Atru.chr4.2848 Acer truncatum HOM05D006926 ORTHO05D008863 5.2e-59 233.8 216 56.0
CSS0040550 Camellia sinensis var. sinensis HOM05D006926 ORTHO05D008863 5.2e-59 233.8 212 56.1
CSS0048032 Camellia sinensis var. sinensis HOM05D006926 ORTHO05D008863 5.2e-59 233.8 218 55.5
FvH4_4g18230 Fragaria vesca HOM05D006926 ORTHO05D008863 5.2e-59 233.8 216 56.0
FAN12G2558 Fragaria x ananassa HOM05D006926 ORTHO05D008863 5.2e-59 233.8 216 56.0
FAN12G4333 Fragaria x ananassa HOM05D006926 ORTHO05D008863 5.2e-59 233.8 216 56.0
Rhsim04G0222900 Rhododendron simsii HOM05D006926 ORTHO05D008863 1.2e-58 232.6 217 55.3
FAN17G0573 Fragaria x ananassa HOM05D006926 ORTHO05D008863 4.4e-58 230.7 214 55.6
Ca_06384_v3 Cicer arietinum L. HOM05D006926 ORTHO05D008863 5.8e-58 230.3 146 76.7
Ca_29965_v3 Cicer arietinum L. HOM05D006926 ORTHO05D008863 5.8e-58 230.3 146 76.7
COL.COLO4_13863 Corchorus olitorius HOM05D006926 ORTHO05D008863 5.8e-58 230.3 223 54.7
Nitab4.5_0005852g0010 Nicotiana tabacum HOM05D006926 ORTHO05D008863 9.8e-58 229.6 180 61.7
vmacro08158 Vaccinium macrocarpon HOM05D006926 ORTHO05D008863 6.4e-57 226.9 198 55.1
Nitab4.5_0000059g0440 Nicotiana tabacum HOM05D006926 ORTHO05D008863 1.1e-56 226.1 180 61.1
MD08G1066700 Malus domestica HOM05D006926 ORTHO05D008863 1.9e-56 225.3 182 58.8
Peaxi162Scf01123g00213 Petunia axillaris HOM05D006926 ORTHO05D008863 5.4e-56 223.8 180 60.6
Solyc01g080720.4 Solanum lycopersicum HOM05D006926 ORTHO05D008863 9.2e-56 223.0 178 60.7
PGSC0003DMG400006295 Solanum tuberosum HOM05D006926 ORTHO05D008863 2.1e-55 221.9 178 60.7
ClCG05G006130 Citrullus lanatus HOM05D006926 ORTHO05D008863 2.7e-55 221.5 215 54.4
HanXRQChr05g0150001 Helianthus annuus HOM05D006926 ORTHO05D008863 3.5e-55 221.1 183 54.6
Thecc.04G285300 Theobroma cacao HOM05D006926 ORTHO05D008863 3.5e-55 221.1 229 52.8
CAN.G185.37 Capsicum annuum HOM05D006926 ORTHO05D008863 1.0e-54 219.5 245 48.6
TWI09G0560 Tripterygium wilfordii HOM05D006926 ORTHO05D008863 1.0e-54 219.5 180 58.9
PGR031G3585 Punica granatum HOM05D006926 ORTHO05D008863 3.0e-54 218.0 181 56.4
Lalb_Chr10g0107371 Lupinus albus HOM05D006926 ORTHO05D008863 1.5e-53 215.7 196 59.2
CANSAT78G1021 Cannabis sativa HOM05D006926 ORTHO05D008863 1.9e-53 215.3 241 48.5
ECA233G5048 Erigeron canadensis HOM05D006926 ORTHO05D008863 1.9e-53 215.3 182 54.4
RcHm_v2.0_Chr4g0422371 Rosa chinensis HOM05D006926 ORTHO05D008863 3.3e-53 214.5 205 56.1
Sed0000576 Sechium edule HOM05D006926 ORTHO05D008863 7.3e-53 213.4 205 55.6
THA.LOC104818923 Tarenaya hassleriana HOM05D006926 ORTHO05D008863 1.2e-52 212.6 240 48.3
Gohir.D09G239500 Gossypium hirsutum HOM05D006926 ORTHO05D008863 1.1e-51 209.5 203 53.7
Gorai.006G262300 Gossypium raimondii HOM05D006926 ORTHO05D008863 1.1e-51 209.5 203 53.7
Sc10g0006430 Simmondsia chinensis HOM05D006926 ORTHO05D008863 1.8e-51 208.8 172 57.6
Gohir.A09G238600 Gossypium hirsutum HOM05D006926 ORTHO05D008863 4.0e-51 207.6 203 53.2
EL10Ac1g01925 Beta vulgaris HOM05D006926 ORTHO05D008863 5.2e-51 207.2 170 57.6
AUR62035127 Chenopodium quinoa HOM05D006926 ORTHO05D008863 1.5e-50 205.7 224 48.7
Cc00_g07570 Coffea canephora HOM05D006926 ORTHO05D008863 2.0e-50 205.3 209 49.3
A03p34960 Brassica napus HOM05D006926 ORTHO05D008863 2.6e-50 204.9 196 54.1
BraA03t12676Z Brassica rapa HOM05D006926 ORTHO05D008863 2.6e-50 204.9 190 55.8
AUR62040613 Chenopodium quinoa HOM05D006926 ORTHO05D008863 2.6e-50 204.9 171 57.3
Oeu029705.1 Olea europaea HOM05D006926 ORTHO05D008863 3.4e-50 204.5 177 54.2
C03p42540 Brassica napus HOM05D006926 ORTHO05D008863 1.3e-49 202.6 191 55.0
Nn6g34671 Nelumbo nucifera HOM05D006926 ORTHO05D008863 1.1e-48 199.5 200 51.5
Hund12224 Selenicereus undatus HOM05D006926 ORTHO05D008863 1.1e-48 199.5 163 60.1
Cc01_g06580 Coffea canephora HOM05D006926 ORTHO05D008863 1.4e-48 199.1 207 48.3
Actinidia40273 Actinidia chinensis HOM05D006926 ORTHO05D008863 4.1e-48 197.6 214 50.5
DCAR_006643 Daucus carota HOM05D006926 ORTHO05D008863 7.1e-48 196.8 163 57.1
AL3G18040 Arabidopsis lyrata HOM05D006926 ORTHO05D008863 2.1e-47 195.3 171 56.7
AL3G18070 Arabidopsis lyrata HOM05D006926 ORTHO05D008863 2.1e-47 195.3 171 56.7
AL3G18090 Arabidopsis lyrata HOM05D006926 ORTHO05D008863 2.1e-47 195.3 171 56.7
MSTRG.10097 Avicennia marina HOM05D006926 ORTHO05D008863 3.5e-47 194.5 190 51.1
Migut.G00155 Erythranthe guttata HOM05D006926 ORTHO05D008863 4.6e-47 194.1 234 47.9
SHI00269 Sapria himalayana HOM05D006926 ORTHO05D008863 7.8e-47 193.4 183 54.6
AT3G06920 Arabidopsis thaliana HOM05D006926 ORTHO05D008863 2.3e-46 191.8 171 55.6
SalBow1G7679 Salvia bowleyana HOM05D006926 ORTHO05D008863 5.1e-46 190.7 239 44.4
CsaV3_3G014680 Cucumis sativus L. HOM05D006926 ORTHO05D008863 6.6e-46 190.3 199 51.3
Glyma.02G298900 Glycine max HOM05D006926 ORTHO05D008863 6.6e-46 190.3 144 65.3
Ah.00g000960 Amaranthus hybridus HOM05D006926 ORTHO05D008863 1.5e-45 189.1 165 54.5
CARHR081530 Cardamine hirsuta HOM05D006926 ORTHO05D008863 1.5e-45 189.1 163 56.4
AL159U10010 Arabidopsis lyrata HOM05D006926 ORTHO05D008863 1.9e-45 188.7 171 55.6
Nn1g09562 Nelumbo nucifera HOM05D006926 ORTHO05D008863 9.6e-45 186.4 199 46.7
Thhalv10020026m.g Eutrema salsugineum HOM05D006926 ORTHO05D008863 1.6e-44 185.7 173 53.8
Sp3g05870 Schrenkiella parvula HOM05D006926 ORTHO05D008863 8.1e-44 183.3 164 54.9
Sopen01g030780 Solanum pennellii HOM05D006926 ORTHO05D008863 2.4e-43 181.8 178 52.2
Nn2g14325 Nelumbo nucifera HOM05D006926 ORTHO05D008863 6.8e-43 180.3 214 45.3
Aa31LG5G17490 Aethionema arabicum HOM05D006926 ORTHO05D008863 8.9e-43 179.9 157 53.5
MBI01_g30450_MAGBIO Magnolia biondii HOM05D006926 ORTHO05D008863 8.9e-43 179.9 155 57.4
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 1.3e-41 176.0 159 55.3
PSO302G0177 Papaver somniferum HOM05D006926 ORTHO05D008863 3.8e-41 174.5 216 46.3
BolC3t16524H Brassica oleracea HOM05D006926 ORTHO05D008863 1.9e-40 172.2 159 52.8
THA.LOC104827343 Tarenaya hassleriana HOM05D006926 ORTHO05D008863 2.4e-40 171.8 223 47.1
CiPaw.01G148200 Carya illinoinensis HOM05D006926 ORTHO05D008863 8.7e-38 163.3 153 50.3
CDE01G0787 Ceratophyllum demersum HOM05D006926 ORTHO05D008863 1.2e-34 152.9 170 44.1
Dinv26449 Davidia involucrata HOM05D006926 ORTHO05D008863 2.2e-33 148.7 100 74.0
Eucgr.C02193 Eucalyptus grandis HOM05D006926 ORTHO05D008863 2.1e-31 142.1 149 49.7
SGA_v2.0_scaffold67G22630 Striga asiatica HOM05D006926 ORTHO05D008863 1.1e-29 136.3 232 35.3
ATR0796G196 Amborella trichopoda HOM05D006926 ORTHO05D008863 1.6e-28 132.5 132 48.5
CDE11G0294 Ceratophyllum demersum HOM05D006926 ORTHO05D008863 6.9e-27 127.1 143 42.7
HPP92_015997 Vanilla planifolia HOM05D006926 ORTHO05D008863 2.8e-20 105.1 128 39.1
Eucgr.B01739 Eucalyptus grandis HOM05D006926 ORTHO05D008863 4.5e-18 97.8 80 51.2
Carub.0003s0644 Capsella rubella HOM05D006926 ORTHO05D008863 3.5e-15 88.2 82 57.3
Zm00001eb304410 Zea mays HOM05D006926 ORTHO05D008863 2.3e-14 85.5 131 37.4
GSVIVG01017733001 Vitis vinifera HOM05D006926 ORTHO05D008863 2.5e-13 82.0 47 80.9
TAR365G0845 Trochodendron aralioides HOM05D006926 ORTHO05D008863 3.3e-13 81.6 47 80.9
Os07g0249100 Oryza sativa ssp. japonica HOM05D006926 ORTHO05D008863 3.7e-12 78.2 134 32.8
Ciclev10007037m.g Citrus clementina HOM05D006926 ORTHO05D008863 1.8e-11 75.9 47 76.6
Lsat_1_v5_gn_8_31281 Lactuca sativa HOM05D006926 ORTHO05D008863 3.8e-09 68.2 46 67.4
arahy.Tifrunner.gnm1.ann1.U08DU4 Arachis hypogaea HOM05D002460 ORTHO05D002716 1.1e-08 66.6 164 25.0
AagrBONN_evm.TU.Sc2ySwM_344.1991 Anthoceros agrestis HOM05D004079 ORTHO05D008352 1.4e-08 66.2 144 26.4
arahy.Tifrunner.gnm1.ann1.633QML Arachis hypogaea HOM05D002460 ORTHO05D002716 1.9e-08 65.9 164 25.0
Mapoly0001s0055 Marchantia polymorpha HOM05D004079 ORTHO05D005437 1.9e-08 65.9 170 22.4
VMungo1215G0531 Vigna mungo HOM05D002460 ORTHO05D002716 1.9e-08 65.9 155 22.6
Actinidia11685 Actinidia chinensis HOM05D007830 ORTHO05D009947 4.2e-08 64.7 128 25.0
Psat4g060760 Pisum sativum HOM05D002460 ORTHO05D002716 5.5e-08 64.3 177 23.7
Sp5g00960 Schrenkiella parvula HOM05D000424 ORTHO05D002854 5.5e-08 64.3 146 24.0
AL5G45290 Arabidopsis lyrata HOM05D000424 ORTHO05D002854 7.2e-08 63.9 207 24.6
AT3G62540 Arabidopsis thaliana HOM05D000424 ORTHO05D002854 7.2e-08 63.9 202 23.3
Manes.06G110600 Manihot esculenta HOM05D002460 ORTHO05D002716 7.2e-08 63.9 173 27.2
Carub.0005s2919 Capsella rubella HOM05D000424 ORTHO05D002854 9.3e-08 63.5 206 24.3
CARHR172800 Cardamine hirsuta HOM05D000424 ORTHO05D002854 9.3e-08 63.5 211 25.6
Aa31LG10G16370 Aethionema arabicum HOM05D000424 ORTHO05D002854 1.2e-07 63.2 132 25.0
BolC8t51308H Brassica oleracea HOM05D000424 ORTHO05D002854 1.2e-07 63.2 213 24.9
Phvul.003G205400 Phaseolus vulgaris HOM05D002460 ORTHO05D002716 1.2e-07 63.2 155 21.9
AT3G62470 Arabidopsis thaliana HOM05D000424 ORTHO05D002854 1.6e-07 62.8 202 23.3
AT5G14820 Arabidopsis thaliana HOM05D000424 ORTHO05D002854 1.6e-07 62.8 202 23.3
Lj4g0007925 Lotus japonicus HOM05D002460 ORTHO05D002716 1.6e-07 62.8 178 23.0
BcaC07g40729 Brassica carinata HOM05D000424 ORTHO05D002854 2.1e-07 62.4 150 24.7
Thhalv10005842m.g Eutrema salsugineum HOM05D000424 ORTHO05D002854 2.1e-07 62.4 132 25.0
Oeu029182.1 Olea europaea HOM05D007830 ORTHO05D009947 3.5e-07 61.6 140 25.7
SalBow3G1991 Salvia bowleyana HOM05D000424 ORTHO05D000355 4.6e-07 61.2 131 26.0
THA.LOC104802157 Tarenaya hassleriana HOM05D000424 ORTHO05D002854 4.6e-07 61.2 199 23.1
C08p37300 Brassica napus HOM05D000424 ORTHO05D002854 6.1e-07 60.8 212 24.5
Aa31LG4G16870 Aethionema arabicum HOM05D002460 ORTHO05D002716 7.9e-07 60.5 170 25.3
BcaC07g42764 Brassica carinata HOM05D000424 ORTHO05D002854 7.9e-07 60.5 135 25.9
VMungo1215G2415 Vigna mungo HOM05D002460 ORTHO05D002716 7.9e-07 60.5 164 23.2
Thecc.09G185200 Theobroma cacao HOM05D000424 ORTHO05D002854 1.0e-06 60.1 132 22.7
Ah.11g049280 Amaranthus hybridus HOM05D000424 ORTHO05D002854 1.3e-06 59.7 131 26.0
Ca_14278_v3 Cicer arietinum L. HOM05D002460 ORTHO05D002716 1.3e-06 59.7 186 21.5
Actinidia33408 Actinidia chinensis HOM05D000424 ORTHO05D000355 2.3e-06 58.9 143 23.1
Gohir.D11G043400 Gossypium hirsutum HOM05D002460 ORTHO05D002716 2.3e-06 58.9 164 22.6
Lalb_Chr07g0182981 Lupinus albus HOM05D002460 ORTHO05D002716 2.3e-06 58.9 170 21.2
TAR206G0004 Trochodendron aralioides HOM05D000424 ORTHO05D000355 3.0e-06 58.5 143 23.8
EL10As5g23523 Beta vulgaris HOM05D000424 ORTHO05D002854 3.9e-06 58.2 131 24.4
Carub.0006s1417 Capsella rubella HOM05D002460 ORTHO05D002716 3.9e-06 58.2 146 22.6
Peaxi162Scf00020g00192 Petunia axillaris HOM05D002460 ORTHO05D002716 3.9e-06 58.2 132 25.0
Sed0021384 Sechium edule HOM05D006926 ORTHO05D008863 5.1e-06 57.8 44 61.4
Zm00001eb347480 Zea mays HOM05D000424 ORTHO05D002854 5.1e-06 57.8 144 26.4
Aa31LG11G13630 Aethionema arabicum HOM05D002460 ORTHO05D002716 6.7e-06 57.4 213 23.0
MBI07_g28242_MAGBIO Magnolia biondii HOM05D002460 ORTHO05D002716 6.7e-06 57.4 129 26.4
TPR.G37490 Trifolium pratense HOM05D002460 ORTHO05D002716 8.7e-06 57.0 172 21.5
Zm00001eb286070 Zea mays HOM05D000424 ORTHO05D002854 8.7e-06 57.0 180 24.4


User provided reference genes

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