Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1412 Trifolium pratense HOM05D002733 ORTHO05D003856 1.4e-139 499.6 244 100.0
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 1.0e-102 377.1 243 79.0
TPR.G1447 Trifolium pratense HOM05D002733 ORTHO05D003856 1.4e-67 260.4 144 84.7
TPR.G1395 Trifolium pratense HOM05D002733 ORTHO05D003856 2.3e-54 216.5 249 48.6
TPR.G8024 Trifolium pratense HOM05D002733 ORTHO05D003856 8.8e-54 214.5 268 46.3
TPR.G12039 Trifolium pratense HOM05D002733 ORTHO05D003856 8.0e-47 191.4 251 45.8
Medtr3g013920 Medicago truncatula HOM05D002733 ORTHO05D003856 3.1e-43 179.5 228 46.9
Medtr3g013820 Medicago truncatula HOM05D002733 ORTHO05D003856 4.1e-43 179.1 228 47.4
Medtr3g013810 Medicago truncatula HOM05D002733 ORTHO05D003856 5.4e-43 178.7 228 47.4
TPR.G22027 Trifolium pratense HOM05D002733 ORTHO05D003856 1.2e-42 177.6 111 74.8
Medtr0267s0030 Medicago truncatula HOM05D002733 ORTHO05D003856 3.5e-42 176.0 228 46.1
Medtr3g013900 Medicago truncatula HOM05D002733 ORTHO05D003856 3.5e-42 176.0 228 46.5
Lj1g0000886 Lotus japonicus HOM05D002733 ORTHO05D003856 2.3e-30 136.7 140 52.1
Potri.001G397100 Populus trichocarpa HOM05D002733 ORTHO05D003856 6.8e-30 135.2 133 48.1
RcHm_v2.0_Chr2g0120751 Rosa chinensis HOM05D002733 ORTHO05D003856 6.8e-30 135.2 131 48.9
Hma1.2p1_1080F.1_g255020 Hydrangea macrophylla HOM05D002733 ORTHO05D003856 1.2e-29 134.4 121 49.6
VMungo1080G0152 Vigna mungo HOM05D002733 ORTHO05D003856 2.6e-29 133.3 112 54.5
VMungo1080G0686 Vigna mungo HOM05D002733 ORTHO05D003856 4.4e-29 132.5 111 55.0
FAN28G1642 Fragaria x ananassa HOM05D000949 ORTHO05D001276 7.5e-29 131.7 132 46.2
Lj3g0006952 Lotus japonicus HOM05D002733 ORTHO05D003856 7.5e-29 131.7 161 42.2
FAN23G1126 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.7e-28 130.6 132 45.5
Duzib213G1035 Durio zibethinus HOM05D002733 ORTHO05D003856 2.9e-28 129.8 209 38.8
Sabra16G0260100 Salix brachista HOM05D002733 ORTHO05D003856 2.9e-28 129.8 130 48.5
Thecc.07G171000 Theobroma cacao HOM05D002733 ORTHO05D003856 2.9e-28 129.8 139 47.5
FvH4_1g24261 Fragaria vesca HOM05D002733 ORTHO05D003856 3.7e-28 129.4 132 45.5
FAN26G1179 Fragaria x ananassa HOM05D002733 ORTHO05D003856 3.7e-28 129.4 132 45.5
Duzib213G0038 Durio zibethinus HOM05D002733 ORTHO05D003856 2.4e-27 126.7 209 38.3
Manes.03G176000 Manihot esculenta HOM05D002733 ORTHO05D003856 2.4e-27 126.7 132 47.7
Phvul.005G031300 Phaseolus vulgaris HOM05D002733 ORTHO05D003856 4.1e-27 125.9 154 44.8
Haze_23259 Corylus avellana HOM05D002733 ORTHO05D003856 1.2e-26 124.4 133 45.9
FAN19G2118 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.2e-26 124.4 126 46.0
Glyma.04G133200 Glycine max HOM05D002733 ORTHO05D003856 1.2e-26 124.4 185 36.8
Cfa009897 Carpinus fangiana HOM05D002733 ORTHO05D003856 2.0e-26 123.6 133 45.9
FAN23G1485 Fragaria x ananassa HOM05D002733 ORTHO05D003856 2.0e-26 123.6 126 46.0
Prupe.7G223900 Prunus persica HOM05D002733 ORTHO05D003856 2.0e-26 123.6 131 45.8
CiPaw.03G015000 Carya illinoinensis HOM05D002733 ORTHO05D003856 4.6e-26 122.5 133 46.6
Duzib168G2229 Durio zibethinus HOM05D002733 ORTHO05D003856 4.6e-26 122.5 228 34.2
Manes.03G176200 Manihot esculenta HOM05D002733 ORTHO05D003856 4.6e-26 122.5 132 46.2
CSS0001293 Camellia sinensis var. sinensis HOM05D002733 ORTHO05D003856 1.3e-25 120.9 131 43.5
Prupe.7G223800 Prunus persica HOM05D002733 ORTHO05D003856 1.3e-25 120.9 131 44.3
CiPaw.03G015300 Carya illinoinensis HOM05D002733 ORTHO05D003856 6.6e-25 118.6 133 45.9
CiPaw.03G014700 Carya illinoinensis HOM05D002733 ORTHO05D003856 8.6e-25 118.2 134 43.3
Ciclev10010395m.g Citrus clementina HOM05D002733 ORTHO05D003856 8.6e-25 118.2 200 38.0
FvH4_1g16231 Fragaria vesca HOM05D002733 ORTHO05D003856 8.6e-25 118.2 130 44.6
RcHm_v2.0_Chr7g0192641 Rosa chinensis HOM05D002733 ORTHO05D003856 8.6e-25 118.2 131 43.5
FvH4_5g06160 Fragaria vesca HOM05D002733 ORTHO05D003856 1.5e-24 117.5 142 41.5
FAN13G0375 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.5e-24 117.5 142 41.5
FAN18G0094 Fragaria x ananassa HOM05D002733 ORTHO05D003856 2.5e-24 116.7 142 41.5
Cpa.g.sc81.85 Carica papaya HOM05D002733 ORTHO05D003856 3.3e-24 116.3 184 35.3
Gohir.D06G064250 Gossypium hirsutum HOM05D002733 ORTHO05D003856 7.3e-24 115.2 131 42.7
Gorai.010G075000 Gossypium raimondii HOM05D002733 ORTHO05D003856 7.3e-24 115.2 131 42.7
MD02G1059300 Malus domestica HOM05D002733 ORTHO05D003856 9.5e-24 114.8 131 40.5
Gohir.A06G065650 Gossypium hirsutum HOM05D002733 ORTHO05D003856 1.2e-23 114.4 131 42.7
Phvul.005G028900 Phaseolus vulgaris HOM05D002733 ORTHO05D003856 1.2e-23 114.4 112 45.5
Thecc.09G104200 Theobroma cacao HOM05D002733 ORTHO05D003856 2.1e-23 113.6 138 44.2
COL.COLO4_32232 Corchorus olitorius HOM05D002733 ORTHO05D003856 3.6e-23 112.8 140 43.6
Sed0027145 Sechium edule HOM05D002733 ORTHO05D003856 1.4e-22 110.9 119 43.7
CiPaw.03G014800 Carya illinoinensis HOM05D002733 ORTHO05D003856 1.8e-22 110.5 134 44.0
CsaV3_3G004840 Cucumis sativus L. HOM05D002733 ORTHO05D003856 6.8e-22 108.6 120 43.3
Ciclev10007038m.g Citrus clementina HOM05D002733 ORTHO05D003856 2.6e-21 106.7 185 33.0
MD00G1107900 Malus domestica HOM05D002733 ORTHO05D003856 2.6e-21 106.7 145 39.3
QL02p042807 Quercus lobata HOM05D002733 ORTHO05D003856 2.6e-21 106.7 156 39.1
Peaxi162Scf00023g00136 Petunia axillaris HOM05D002733 ORTHO05D003856 4.4e-21 105.9 131 45.8
Prupe.7G224000 Prunus persica HOM05D002733 ORTHO05D003856 4.4e-21 105.9 131 42.0
QL02p042555 Quercus lobata HOM05D002733 ORTHO05D003856 4.4e-21 105.9 156 39.1
Sed0022151 Sechium edule HOM05D002733 ORTHO05D003856 7.5e-21 105.1 122 37.7
Haze_00196 Corylus avellana HOM05D002733 ORTHO05D003856 9.8e-21 104.8 131 41.2
MD15G1316300 Malus domestica HOM05D002733 ORTHO05D003856 9.8e-21 104.8 141 39.0
Eucgr.L02178 Eucalyptus grandis HOM05D002733 ORTHO05D003856 1.3e-20 104.4 142 39.4
COL.COLO4_34789 Corchorus olitorius HOM05D002733 ORTHO05D003856 2.9e-20 103.2 129 42.6
Nitab4.5_0000316g0140 Nicotiana tabacum HOM05D002733 ORTHO05D003856 6.4e-20 102.1 130 44.6
AL8G24310 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 8.3e-20 101.7 108 47.2
Haze_00185 Corylus avellana HOM05D002733 ORTHO05D003856 1.1e-19 101.3 124 41.1
Nitab4.5_0001888g0040 Nicotiana tabacum HOM05D002733 ORTHO05D003856 1.4e-19 100.9 130 44.6
Cfa016245 Carpinus fangiana HOM05D002733 ORTHO05D003856 1.9e-19 100.5 131 38.2
Rhsim05G0042200 Rhododendron simsii HOM05D002733 ORTHO05D003856 1.9e-19 100.5 115 40.9
Cfa016244 Carpinus fangiana HOM05D002733 ORTHO05D003856 3.2e-19 99.8 128 40.6
AL7G49890 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 5.4e-19 99.0 109 45.9
DCAR_003269 Daucus carota HOM05D002733 ORTHO05D003856 9.2e-19 98.2 129 41.1
Sed0017653 Sechium edule HOM05D002733 ORTHO05D003856 3.5e-18 96.3 115 43.5
MELO3C004101.2 Cucumis melo HOM05D002733 ORTHO05D003856 6.0e-18 95.5 120 38.3
PGSC0003DMG400000368 Solanum tuberosum HOM05D002733 ORTHO05D003856 6.0e-18 95.5 131 43.5
Solyc12g007300.1 Solanum lycopersicum HOM05D002733 ORTHO05D003856 2.3e-17 93.6 131 42.7
Sopen12g003260 Solanum pennellii HOM05D002733 ORTHO05D003856 2.3e-17 93.6 131 42.7
Prupe.7G224100 Prunus persica HOM05D002733 ORTHO05D003856 3.0e-17 93.2 127 35.4
Actinidia20408 Actinidia chinensis HOM05D002733 ORTHO05D003856 5.1e-17 92.4 141 38.3
Haze_00197 Corylus avellana HOM05D002733 ORTHO05D003856 5.1e-17 92.4 128 38.3
DCAR_028226 Daucus carota HOM05D002733 ORTHO05D003856 6.6e-17 92.0 122 38.5
BolC3t15022H Brassica oleracea HOM05D002733 ORTHO05D003856 8.6e-17 91.7 133 40.6
Eucgr.C01014 Eucalyptus grandis HOM05D002733 ORTHO05D003856 1.5e-16 90.9 129 36.4
Sp4g22050 Schrenkiella parvula HOM05D002733 ORTHO05D003856 1.5e-16 90.9 125 42.4
BcaB06g29131 Brassica carinata HOM05D002733 ORTHO05D003856 1.9e-16 90.5 113 41.6
C03p26370 Brassica napus HOM05D002733 ORTHO05D003856 1.9e-16 90.5 133 40.6
QL01p018928 Quercus lobata HOM05D002733 ORTHO05D003856 1.9e-16 90.5 116 42.2
Sp4g22450 Schrenkiella parvula HOM05D002733 ORTHO05D003856 1.9e-16 90.5 113 39.8
THA.LOC104810048 Tarenaya hassleriana HOM05D002733 ORTHO05D003856 1.9e-16 90.5 140 39.3
Actinidia09441 Actinidia chinensis HOM05D002733 ORTHO05D003856 2.5e-16 90.1 142 35.2
BraA03t11459Z Brassica rapa HOM05D002733 ORTHO05D003856 3.3e-16 89.7 133 39.1
AT4G03170 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 5.6e-16 89.0 108 41.7
CAN.G1774.3 Capsicum annuum HOM05D002733 ORTHO05D003856 5.6e-16 89.0 132 37.9
A03p22270 Brassica napus HOM05D002733 ORTHO05D003856 7.3e-16 88.6 133 39.1
DCAR_003268 Daucus carota HOM05D002733 ORTHO05D003856 7.3e-16 88.6 116 38.8
Sp5g18240 Schrenkiella parvula HOM05D002733 ORTHO05D003856 7.3e-16 88.6 113 38.1
MD02G1060300 Malus domestica HOM05D002733 ORTHO05D003856 1.6e-15 87.4 107 41.1
PGSC0003DMG400000371 Solanum tuberosum HOM05D002733 ORTHO05D003856 2.1e-15 87.0 131 38.9
A04p30010 Brassica napus HOM05D002733 ORTHO05D003856 2.8e-15 86.7 114 40.4
BraA04t18506Z Brassica rapa HOM05D002733 ORTHO05D003856 2.8e-15 86.7 114 40.4
Sabra08G0161200 Salix brachista HOM05D002733 ORTHO05D003856 3.6e-15 86.3 102 42.2
QL01p018935 Quercus lobata HOM05D002733 ORTHO05D003856 4.7e-15 85.9 115 41.7
BcaB02g09048 Brassica carinata HOM05D002733 ORTHO05D003856 6.2e-15 85.5 154 33.8
Thhalv10017517m.g Eutrema salsugineum HOM05D002733 ORTHO05D003856 6.2e-15 85.5 114 41.2
C03p26740 Brassica napus HOM05D002733 ORTHO05D003856 1.1e-14 84.7 136 34.6
BolC3t15059H Brassica oleracea HOM05D002733 ORTHO05D003856 1.1e-14 84.7 136 34.6
Aa31LG8G17170 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.4e-14 84.3 128 38.3
BcaC01g05431 Brassica carinata HOM05D002733 ORTHO05D003856 1.8e-14 84.0 136 34.6
Carub.0003s2754 Capsella rubella HOM05D002733 ORTHO05D003856 1.8e-14 84.0 107 40.2
BcaC02g07356 Brassica carinata HOM05D002733 ORTHO05D003856 4.0e-14 82.8 109 40.4
BolC4t28286H Brassica oleracea HOM05D002733 ORTHO05D003856 5.2e-14 82.4 109 40.4
Peaxi162Scf00665g00139 Petunia axillaris HOM05D002733 ORTHO05D003856 8.9e-14 81.6 161 35.4
Aqoxy1G01499 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 2.0e-13 80.5 127 37.0
Carub.0004s2232 Capsella rubella HOM05D002733 ORTHO05D003856 2.0e-13 80.5 107 38.3
QL01p018939 Quercus lobata HOM05D002733 ORTHO05D003856 2.0e-13 80.5 134 39.6
AL4G37790 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 4.4e-13 79.3 214 29.4
A05p06330 Brassica napus HOM05D002733 ORTHO05D003856 4.4e-13 79.3 132 37.1
CiPaw.03G015100 Carya illinoinensis HOM05D002733 ORTHO05D003856 5.8e-13 79.0 125 39.2
Aa31LG7G1520 Aethionema arabicum HOM05D002733 ORTHO05D003856 7.5e-13 78.6 108 38.9
Aa31LG7G1600 Aethionema arabicum HOM05D002733 ORTHO05D003856 7.5e-13 78.6 124 36.3
Aa31LG8G17220 Aethionema arabicum HOM05D002733 ORTHO05D003856 9.9e-13 78.2 127 35.4
DCAR_014131 Daucus carota HOM05D002733 ORTHO05D003856 9.9e-13 78.2 131 34.4
Aqoxy1G01498 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 1.3e-12 77.8 125 36.0
BcaC02g12127 Brassica carinata HOM05D002733 ORTHO05D003856 1.3e-12 77.8 132 37.1
C04p07280 Brassica napus HOM05D002733 ORTHO05D003856 1.3e-12 77.8 132 37.1
BolC4t22351H Brassica oleracea HOM05D002733 ORTHO05D003856 1.3e-12 77.8 132 37.1
Aa31LG8G17200 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.7e-12 77.4 122 36.9
PSO566G0305 Papaver somniferum HOM05D002733 ORTHO05D003856 2.2e-12 77.0 105 38.1
Aa31LG8G11380 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.9e-12 76.6 129 35.7
Aa31LG8G17140 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.9e-12 76.6 158 31.0
COL.COLO4_00094 Corchorus olitorius HOM05D002733 ORTHO05D003856 2.9e-12 76.6 82 48.8
Aa31LG8G17210 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.7e-12 76.3 124 37.1
BraA05t19601Z Brassica rapa HOM05D002733 ORTHO05D003856 3.7e-12 76.3 132 37.1
Aa31LG7G1540 Aethionema arabicum HOM05D002733 ORTHO05D003856 8.3e-12 75.1 111 37.8
Nitab4.5_0005564g0030 Nicotiana tabacum HOM05D002733 ORTHO05D003856 1.4e-11 74.3 109 41.3
Aa31LG7G1550 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.9e-11 73.9 131 35.1
FAN19G0693 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.9e-11 73.9 67 49.3
AT1G20600 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 7.1e-11 72.0 91 40.7
Thhalv10003384m.g Eutrema salsugineum HOM05D002733 ORTHO05D003856 2.1e-10 70.5 110 36.4
Phvul.004G029250 Phaseolus vulgaris HOM05D022012 ORTHO05D003856 2.1e-10 70.5 97 44.3
AT4G03160 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 2.7e-10 70.1 119 34.5
Phvul.004G169400 Phaseolus vulgaris HOM05D022012 ORTHO05D003856 2.7e-10 70.1 97 44.3
Aa31LG8G17150 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.5e-10 69.7 118 35.6
ATR1159G057 Amborella trichopoda HOM05D020218 ORTHO05D013427 7.8e-10 68.6 108 35.2
PSO782G1409 Papaver somniferum HOM05D002733 ORTHO05D003856 1.3e-09 67.8 107 40.2
Aa31LG8G17190 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.7e-09 67.4 110 33.6
Peaxi162Scf00665g00148 Petunia axillaris HOM05D002733 ORTHO05D003856 5.1e-09 65.9 130 37.7
BolC3t19780H Brassica oleracea HOM05D010480 ORTHO05D003856 8.6e-09 65.1 130 33.8
Dinv41650 Davidia involucrata HOM05D002733 ORTHO05D003856 1.1e-08 64.7 115 37.4
Peaxi162Scf00665g00126 Petunia axillaris HOM05D002733 ORTHO05D003856 1.1e-08 64.7 116 37.1
Aa31LG7G1590 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.5e-08 63.5 110 37.3
Aa31LG7G1510 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.3e-08 63.2 110 36.4
Dinv07992 Davidia involucrata HOM05D002733 ORTHO05D003856 2.8e-07 60.1 101 39.6
Aqoxy2G03580 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 3.6e-07 59.7 70 38.6
MBI18_g14086_MAGBIO Magnolia biondii HOM05D018115 ORTHO05D017274 3.6e-07 59.7 100 33.0
VMungo0464G0934 Vigna mungo HOM05D022012 ORTHO05D003856 4.7e-07 59.3 97 39.2
BcaC01g05470 Brassica carinata HOM05D002733 ORTHO05D003856 6.2e-07 58.9 111 32.4
A05p06650 Brassica napus HOM05D010480 ORTHO05D003856 8.1e-07 58.5 128 32.8
BraA05t19631Z Brassica rapa HOM05D010480 ORTHO05D003856 8.1e-07 58.5 128 32.8
FAN28G2808 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.1e-06 58.2 73 42.5
CDE02G0413 Ceratophyllum demersum HOM05D040791 ORTHO05D013425 1.4e-06 57.8 80 38.8
VMungo0464G0927 Vigna mungo HOM05D022012 ORTHO05D003856 1.4e-06 57.8 124 33.9
A05p06630 Brassica napus HOM05D010480 ORTHO05D003856 2.4e-06 57.0 113 32.7
BraA05t19630Z Brassica rapa HOM05D010480 ORTHO05D003856 2.4e-06 57.0 113 32.7
Aa31LG7G1580 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.1e-06 56.6 91 38.5
Dinv26718 Davidia involucrata HOM05D002733 ORTHO05D003856 3.1e-06 56.6 88 42.0
Medtr5g007910 Medicago truncatula HOM05D000896 ORTHO05D000594 3.1e-06 56.6 147 31.3
Phvul.004G169500 Phaseolus vulgaris HOM05D022012 ORTHO05D003856 5.2e-06 55.8 95 40.0
Aqoxy1G01797 Aquilegia oxysepala HOM05D000896 ORTHO05D000594 6.8e-06 55.5 111 30.6
CsaV3_2G029240 Cucumis sativus L. HOM05D000896 ORTHO05D000594 6.8e-06 55.5 141 29.8
BcaC02g12110 Brassica carinata HOM05D010480 ORTHO05D003856 8.9e-06 55.1 114 33.3
C04p07760 Brassica napus HOM05D010480 ORTHO05D003856 8.9e-06 55.1 113 31.9
BolC4t22393H Brassica oleracea HOM05D010480 ORTHO05D003856 8.9e-06 55.1 113 31.9


User provided reference genes

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