Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G14114 Trifolium pratense HOM05D004429 ORTHO05D005583 1.7e-83 312.8 177 100.0
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 3.1e-40 169.1 110 84.5
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 1.5e-23 113.6 104 53.8
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 1.5e-23 113.6 132 47.7
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 1.9e-21 106.7 111 57.7
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 4.6e-20 102.1 110 52.7
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 8.7e-19 97.8 130 41.5
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 1.1e-18 97.4 128 43.8
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 1.5e-18 97.1 111 45.0
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 4.3e-18 95.5 113 46.0
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 1.6e-17 93.6 111 39.6
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 2.1e-17 93.2 114 50.0
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 2.8e-17 92.8 111 40.5
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 4.8e-17 92.0 111 38.7
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 6.2e-17 91.7 109 43.1
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 1.1e-16 90.9 114 43.9
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 1.4e-16 90.5 128 41.4
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 1.8e-16 90.1 111 39.6
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 1.8e-16 90.1 111 39.6
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 2.4e-16 89.7 111 40.5
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 2.4e-16 89.7 111 41.4
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 2.4e-16 89.7 116 42.2
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 2.4e-16 89.7 116 42.2
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 2.4e-16 89.7 112 44.6
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 3.1e-16 89.4 109 42.2
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 3.1e-16 89.4 110 44.5
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 4.1e-16 89.0 112 46.4
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 4.1e-16 89.0 114 42.1
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 5.3e-16 88.6 109 42.2
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 6.9e-16 88.2 109 41.3
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 6.9e-16 88.2 111 41.4
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 6.9e-16 88.2 122 42.6
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 6.9e-16 88.2 109 38.5
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 9.0e-16 87.8 114 41.2
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 1.5e-15 87.0 111 43.2
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.5e-15 87.0 114 44.7
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 1.5e-15 87.0 113 43.4
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 2.0e-15 86.7 111 38.7
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 2.0e-15 86.7 109 43.1
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 2.0e-15 86.7 116 44.0
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 2.0e-15 86.7 115 42.6
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 2.0e-15 86.7 113 43.4
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 2.6e-15 86.3 113 43.4
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 2.6e-15 86.3 113 40.7
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 3.4e-15 85.9 112 40.2
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 3.4e-15 85.9 112 40.2
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 3.4e-15 85.9 112 40.2
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 4.5e-15 85.5 115 43.5
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 4.5e-15 85.5 115 43.5
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 4.5e-15 85.5 116 43.1
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 4.5e-15 85.5 111 38.7
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 4.5e-15 85.5 114 43.0
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 5.8e-15 85.1 109 40.4
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 5.8e-15 85.1 111 38.7
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 5.8e-15 85.1 109 40.4
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 5.8e-15 85.1 111 39.6
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 5.8e-15 85.1 110 43.6
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 1.0e-14 84.3 111 43.2
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 1.0e-14 84.3 111 43.2
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 1.0e-14 84.3 108 45.4
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 1.7e-14 83.6 111 36.9
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 1.7e-14 83.6 113 42.5
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 1.7e-14 83.6 113 40.7
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 1.7e-14 83.6 110 42.7
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 2.2e-14 83.2 111 37.8
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 2.9e-14 82.8 111 39.6
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 2.9e-14 82.8 114 40.4
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 3.8e-14 82.4 121 40.5
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 5.0e-14 82.0 115 42.6
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 5.0e-14 82.0 112 44.6
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 5.0e-14 82.0 124 39.5
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 5.0e-14 82.0 101 44.6
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 8.4e-14 81.3 121 40.5
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 8.4e-14 81.3 107 44.9
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 8.4e-14 81.3 113 40.7
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 8.4e-14 81.3 122 41.0
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 8.4e-14 81.3 110 44.5
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 1.1e-13 80.9 113 42.5
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.4e-13 80.5 124 38.7
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 1.4e-13 80.5 111 45.9
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 2.5e-13 79.7 128 41.4
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 2.5e-13 79.7 117 43.6
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 5.5e-13 78.6 111 39.6
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 5.5e-13 78.6 111 37.8
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 5.5e-13 78.6 111 39.6
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 5.5e-13 78.6 110 44.5
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 5.5e-13 78.6 115 43.5
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 5.5e-13 78.6 113 40.7
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 7.2e-13 78.2 120 40.8
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 9.3e-13 77.8 109 40.4
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 9.3e-13 77.8 113 40.7
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 9.3e-13 77.8 116 39.7
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 1.6e-12 77.0 113 39.8
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 2.1e-12 76.6 112 39.3
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 2.1e-12 76.6 113 43.4
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 2.1e-12 76.6 113 43.4
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 2.1e-12 76.6 111 40.5
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 2.7e-12 76.3 116 47.4
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 2.7e-12 76.3 117 39.3
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 2.7e-12 76.3 116 38.8
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 3.5e-12 75.9 116 38.8
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 4.6e-12 75.5 113 38.9
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 4.6e-12 75.5 111 38.7
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 4.6e-12 75.5 113 37.2
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 4.6e-12 75.5 114 42.1
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 6.1e-12 75.1 111 40.5
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 7.9e-12 74.7 105 41.0
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 7.9e-12 74.7 118 39.0
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.3e-11 73.9 111 36.0
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 1.3e-11 73.9 113 38.9
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.8e-11 73.6 111 38.7
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 2.3e-11 73.2 111 45.0
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 3.0e-11 72.8 113 38.9
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 3.0e-11 72.8 117 37.6
MBI18_g47300_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 3.9e-11 72.4 129 37.2
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 3.9e-11 72.4 109 43.1
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 6.7e-11 71.6 127 34.6
DCAR_017884 Daucus carota HOM05D004429 ORTHO05D005583 8.7e-11 71.2 109 38.5
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 4.3e-10 68.9 113 38.9
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 4.3e-10 68.9 112 37.5
MBI06_g43519_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 5.7e-10 68.6 119 37.8
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 1.3e-09 67.4 56 58.9
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 1.3e-09 67.4 120 36.7
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 1.6e-09 67.0 114 39.5
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 6.3e-09 65.1 130 30.8
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 8.2e-09 64.7 112 37.5
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 8.2e-09 64.7 127 37.8
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 1.1e-08 64.3 56 51.8
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 1.1e-08 64.3 103 41.7
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 2.4e-08 63.2 59 49.2
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 2.4e-08 63.2 116 37.1
EL10Ac9g21191 Beta vulgaris HOM05D006860 ORTHO05D009547 1.5e-07 60.5 105 40.0
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.5e-07 60.5 106 34.0
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 1.5e-07 60.5 113 32.7
EL10Ac5g11422 Beta vulgaris HOM05D004429 ORTHO05D005583 2.6e-07 59.7 102 38.2
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 3.4e-07 59.3 102 34.3
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 4.5e-07 58.9 47 57.4
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 1.0e-06 57.8 102 36.3
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 1.0e-06 57.8 65 41.5
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 1.3e-06 57.4 51 52.9
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 1.3e-06 57.4 55 47.3


User provided reference genes

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