Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G14087 Trifolium pratense HOM05D004010 ORTHO05D004995 9.3e-43 176.4 85 100.0
TPR.G14085 Trifolium pratense HOM05D004010 ORTHO05D004995 4.9e-20 100.9 52 94.2
Psat1g055320 Pisum sativum HOM05D004010 ORTHO05D004995 1.9e-19 99.0 52 90.4
Ca_04154_v3 Cicer arietinum L. HOM05D004010 ORTHO05D004995 2.5e-19 98.6 52 88.5
Medtr6g005010 Medicago truncatula HOM05D004010 ORTHO05D004995 3.5e-18 94.7 52 90.4
Lalb_Chr24g0397171 Lupinus albus HOM05D004010 ORTHO05D004995 1.3e-17 92.8 52 84.6
Glyma.19G004700 Glycine max HOM05D004010 ORTHO05D004995 3.0e-17 91.7 76 63.2
Lj2g0015656 Lotus japonicus HOM05D004010 ORTHO05D004995 8.7e-17 90.1 52 82.7
Eucgr.I01751 Eucalyptus grandis HOM05D004010 ORTHO05D004995 2.2e-15 85.5 52 76.9
Phvul.004G009118 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.2e-15 85.5 52 80.8
Phvul.004G009818 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.2e-15 85.5 52 80.8
Potri.001G346000 Populus trichocarpa HOM05D004010 ORTHO05D004995 2.2e-15 85.5 52 80.8
Prupe.3G290300 Prunus persica HOM05D004010 ORTHO05D004995 2.8e-15 85.1 52 76.9
MD09G1028200 Malus domestica HOM05D004010 ORTHO05D004995 3.7e-15 84.7 55 76.4
MD17G1029800 Malus domestica HOM05D004010 ORTHO05D004995 3.7e-15 84.7 52 78.8
arahy.Tifrunner.gnm1.ann1.8M6LVM Arachis hypogaea HOM05D004010 ORTHO05D004995 4.8e-15 84.3 52 75.0
arahy.Tifrunner.gnm1.ann1.TK4K1F Arachis hypogaea HOM05D004010 ORTHO05D004995 4.8e-15 84.3 52 75.0
Sabra16G0225000 Salix brachista HOM05D004010 ORTHO05D004995 4.8e-15 84.3 52 80.8
Sabra16G0225700 Salix brachista HOM05D004010 ORTHO05D004995 4.8e-15 84.3 52 80.8
Cpa.g.sc108.59 Carica papaya HOM05D004010 ORTHO05D004995 6.3e-15 84.0 52 76.9
CiPaw.03G042500 Carya illinoinensis HOM05D004010 ORTHO05D004995 6.3e-15 84.0 52 75.0
GSVIVG01032418001 Vitis vinifera HOM05D004010 ORTHO05D004995 6.3e-15 84.0 52 75.0
VMungo0464G1595 Vigna mungo HOM05D004010 ORTHO05D004995 8.2e-15 83.6 76 61.8
CANSAT64G1980 Cannabis sativa HOM05D004010 ORTHO05D004995 1.1e-14 83.2 52 75.0
FvH4_6g51330 Fragaria vesca HOM05D004010 ORTHO05D004995 1.1e-14 83.2 52 75.0
FAN14G1482 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.1e-14 83.2 52 75.0
PGR142G3424 Punica granatum HOM05D004010 ORTHO05D004995 1.1e-14 83.2 52 71.2
CSS0006564 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 1.4e-14 82.8 52 75.0
CSS0029677 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 1.4e-14 82.8 52 75.0
FAN05G5546 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.4e-14 82.8 52 75.0
FAN09G4321 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.4e-14 82.8 52 75.0
QL02p075066 Quercus lobata HOM05D004010 ORTHO05D004995 1.4e-14 82.8 52 73.1
RcHm_v2.0_Chr2g0173001 Rosa chinensis HOM05D004010 ORTHO05D004995 1.4e-14 82.8 52 75.0
Manes.17G113000 Manihot esculenta HOM05D004010 ORTHO05D004995 1.8e-14 82.4 52 75.0
vmacro05856 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 1.8e-14 82.4 52 75.0
Dinv33448 Davidia involucrata HOM05D004010 ORTHO05D004995 2.4e-14 82.0 52 75.0
Cfa007379 Carpinus fangiana HOM05D004010 ORTHO05D004995 3.1e-14 81.6 52 73.1
Haze_14730 Corylus avellana HOM05D004010 ORTHO05D004995 3.1e-14 81.6 52 73.1
PSO478G2834 Papaver somniferum HOM05D004010 ORTHO05D004995 3.1e-14 81.6 52 71.2
Ciclev10014033m.g Citrus clementina HOM05D004010 ORTHO05D004995 4.1e-14 81.3 52 75.0
COL.COLO4_29097 Corchorus olitorius HOM05D004010 ORTHO05D004995 4.1e-14 81.3 52 75.0
Gohir.D09G028100 Gossypium hirsutum HOM05D004010 ORTHO05D004995 4.1e-14 81.3 52 75.0
Gorai.006G032700 Gossypium raimondii HOM05D004010 ORTHO05D004995 4.1e-14 81.3 52 75.0
Cc07_g01800 Coffea canephora HOM05D004010 ORTHO05D004995 6.9e-14 80.5 52 69.2
MBI10_g32033_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 6.9e-14 80.5 52 69.2
TWI36G0979 Tripterygium wilfordii HOM05D004010 ORTHO05D004995 9.0e-14 80.1 52 69.2
MELO3C009985.2 Cucumis melo HOM05D004010 ORTHO05D004995 1.5e-13 79.3 52 76.9
Oeu006813.1 Olea europaea HOM05D004010 ORTHO05D004995 1.5e-13 79.3 52 69.2
TAR371G0622 Trochodendron aralioides HOM05D004010 ORTHO05D004995 1.5e-13 79.3 52 69.2
Aqoxy3G01154 Aquilegia oxysepala HOM05D004010 ORTHO05D004995 2.0e-13 79.0 73 53.4
Atru.chr6.2370 Acer truncatum HOM05D004010 ORTHO05D004995 3.4e-13 78.2 52 75.0
Nn4g22648 Nelumbo nucifera HOM05D004010 ORTHO05D004995 3.4e-13 78.2 52 69.2
ClCG10G013960 Citrullus lanatus HOM05D004010 ORTHO05D004995 4.5e-13 77.8 52 75.0
Sed0022234 Sechium edule HOM05D004010 ORTHO05D004995 4.5e-13 77.8 52 75.0
Duzib187G0443 Durio zibethinus HOM05D004010 ORTHO05D004995 5.9e-13 77.4 52 71.2
PSO017G0470 Papaver somniferum HOM05D004010 ORTHO05D004995 5.9e-13 77.4 54 68.5
Thecc.04G015900 Theobroma cacao HOM05D004010 ORTHO05D004995 5.9e-13 77.4 52 69.2
CsaV3_3G042730 Cucumis sativus L. HOM05D004010 ORTHO05D004995 1.0e-12 76.6 52 73.1
Os01g0169500 Oryza sativa ssp. japonica HOM05D004010 ORTHO05D004995 1.7e-12 75.9 53 62.3
Migut.H00083 Erythranthe guttata HOM05D004010 ORTHO05D004995 2.2e-12 75.5 73 49.3
Nitab4.5_0006802g0030 Nicotiana tabacum HOM05D004010 ORTHO05D004995 2.9e-12 75.1 52 63.5
Carub.0005s0611 Capsella rubella HOM05D004010 ORTHO05D004995 5.0e-12 74.3 52 67.3
CAN.G473.4 Capsicum annuum HOM05D004010 ORTHO05D004995 5.0e-12 74.3 52 63.5
CARHR149120 Cardamine hirsuta HOM05D004010 ORTHO05D004995 5.0e-12 74.3 75 52.0
CDE05G1902 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 5.0e-12 74.3 51 62.7
Solyc02g086500.3 Solanum lycopersicum HOM05D004010 ORTHO05D004995 5.0e-12 74.3 52 59.6
Thhalv10003508m.g Eutrema salsugineum HOM05D004010 ORTHO05D004995 6.5e-12 73.9 52 67.3
SalBow6G2090 Salvia bowleyana HOM05D004010 ORTHO05D004995 6.5e-12 73.9 62 54.8
Hund06717 Selenicereus undatus HOM05D004010 ORTHO05D004995 6.5e-12 73.9 52 61.5
Sc03g0007550 Simmondsia chinensis HOM05D004010 ORTHO05D004995 6.5e-12 73.9 52 61.5
BcaC06g30965 Brassica carinata HOM05D004010 ORTHO05D004995 8.5e-12 73.6 52 67.3
A06p40990 Brassica napus HOM05D004010 ORTHO05D004995 8.5e-12 73.6 52 67.3
BraA06t27018Z Brassica rapa HOM05D004010 ORTHO05D004995 8.5e-12 73.6 52 67.3
Sopen02g031220 Solanum pennellii HOM05D004010 ORTHO05D004995 8.5e-12 73.6 52 59.6
Sp2g16800 Schrenkiella parvula HOM05D004010 ORTHO05D004995 1.1e-11 73.2 52 67.3
AL5G17090 Arabidopsis lyrata HOM05D004010 ORTHO05D004995 1.4e-11 72.8 52 67.3
Zm00001eb123050 Zea mays HOM05D004010 ORTHO05D004995 1.4e-11 72.8 52 61.5
HanXRQChr09g0255111 Helianthus annuus HOM05D004010 ORTHO05D004995 1.9e-11 72.4 52 67.3
THA.LOC104825324 Tarenaya hassleriana HOM05D004010 ORTHO05D004995 1.9e-11 72.4 52 65.4
BcaC06g33789 Brassica carinata HOM05D004010 ORTHO05D004995 2.5e-11 72.0 52 65.4
C07p36860 Brassica napus HOM05D004010 ORTHO05D004995 2.5e-11 72.0 52 65.4
BolC7t44198H Brassica oleracea HOM05D004010 ORTHO05D004995 2.5e-11 72.0 52 65.4
DCAR_001437 Daucus carota HOM05D004010 ORTHO05D004995 2.5e-11 72.0 52 67.3
SGA_v2.0_scaffold135G34899 Striga asiatica HOM05D004010 ORTHO05D004995 2.5e-11 72.0 55 60.0
AT3G27670 Arabidopsis thaliana HOM05D004010 ORTHO05D004995 3.2e-11 71.6 52 65.4
Aa31LG2G5000 Aethionema arabicum HOM05D004010 ORTHO05D004995 4.2e-11 71.2 52 63.5
EL10Ac4g08587 Beta vulgaris HOM05D004010 ORTHO05D004995 4.2e-11 71.2 52 61.5
Lsat_1_v5_gn_4_183480 Lactuca sativa HOM05D004010 ORTHO05D004995 4.2e-11 71.2 52 63.5
PGSC0003DMG400012627 Solanum tuberosum HOM05D004010 ORTHO05D004995 4.2e-11 71.2 51 58.8
ATR1158G023 Amborella trichopoda HOM05D004010 ORTHO05D004995 5.5e-11 70.9 52 63.5
Rhsim10G0018100 Rhododendron simsii HOM05D004010 ORTHO05D004995 5.5e-11 70.9 70 55.7
Actinidia36110 Actinidia chinensis HOM05D004010 ORTHO05D004995 9.4e-11 70.1 41 78.0
ECA232G4079 Erigeron canadensis HOM05D004010 ORTHO05D004995 1.2e-10 69.7 52 63.5
SEGI_32252 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 1.2e-10 69.7 51 60.8
AUR62043055 Chenopodium quinoa HOM05D004010 ORTHO05D004995 4.6e-10 67.8 52 57.7
Lju41A39G70 Lonicera japonica HOM05D004010 ORTHO05D004995 1.8e-09 65.9 80 47.5
AUR62034752 Chenopodium quinoa HOM05D004010 ORTHO05D004995 3.9e-09 64.7 52 55.8
SMO361G0448 Selaginella moellendorffii HOM05D004010 ORTHO05D004995 5.1e-09 64.3 52 53.8
Mapoly0001s0420 Marchantia polymorpha HOM05D004010 ORTHO05D004995 6.7e-09 63.9 52 59.6


User provided reference genes

Program Settings