Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G14083 Trifolium pratense HOM05D005892 ORTHO05D007364 2.5e-246 855.1 472 100.0
Medtr7g106200 Medicago truncatula HOM05D005892 ORTHO05D007364 1.9e-145 520.0 330 82.1
Psat3g029200 Pisum sativum HOM05D005892 ORTHO05D007364 3.6e-144 515.8 342 79.5
Ca_25808_v3 Cicer arietinum L. HOM05D005892 ORTHO05D007364 9.7e-142 507.7 346 76.9
Glyma.19G026300 Glycine max HOM05D005892 ORTHO05D007364 1.2e-136 490.7 329 77.8
Lj1g0008745 Lotus japonicus HOM05D005892 ORTHO05D007364 6.1e-136 488.4 378 70.4
Glyma.03G201900 Glycine max HOM05D005892 ORTHO05D007364 8.0e-136 488.0 333 76.6
Phvul.001G195400 Phaseolus vulgaris HOM05D005892 ORTHO05D007364 5.2e-135 485.3 338 75.1
VMungo1383G1945 Vigna mungo HOM05D005892 ORTHO05D007364 1.0e-130 471.1 348 71.3
Lalb_Chr20g0111381 Lupinus albus HOM05D005892 ORTHO05D007364 1.3e-130 470.7 329 72.9
arahy.Tifrunner.gnm1.ann1.EHSJ8W Arachis hypogaea HOM05D005892 ORTHO05D007364 3.3e-129 466.1 328 72.9
arahy.Tifrunner.gnm1.ann1.PAXQ04 Arachis hypogaea HOM05D005892 ORTHO05D007364 8.0e-120 434.9 307 72.6
Lj3A860G48 Lonicera japonica HOM05D005892 ORTHO05D007364 5.6e-113 412.1 334 65.6
GSVIVG01029940001 Vitis vinifera HOM05D005892 ORTHO05D007364 2.3e-111 406.8 338 64.2
CiPaw.10G017200 Carya illinoinensis HOM05D005892 ORTHO05D007364 3.1e-111 406.4 336 65.5
Cfa020027 Carpinus fangiana HOM05D005892 ORTHO05D007364 1.7e-109 400.6 336 63.1
CSS0032108 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 2.2e-109 400.2 334 63.2
FvH4_6g20290 Fragaria vesca HOM05D005892 ORTHO05D007364 2.7e-107 393.3 346 60.4
FAN05G3301 Fragaria x ananassa HOM05D005892 ORTHO05D007364 2.7e-107 393.3 346 60.4
FAN14G3222 Fragaria x ananassa HOM05D005892 ORTHO05D007364 2.7e-107 393.3 346 60.4
RcHm_v2.0_Chr3g0475881 Rosa chinensis HOM05D005892 ORTHO05D007364 2.7e-107 393.3 346 60.7
Manes.08G033200 Manihot esculenta HOM05D005892 ORTHO05D007364 3.5e-107 392.9 336 62.8
Ciclev10011749m.g Citrus clementina HOM05D005892 ORTHO05D007364 4.6e-107 392.5 336 62.5
Cc11_g05910 Coffea canephora HOM05D005892 ORTHO05D007364 4.6e-107 392.5 330 63.0
Prupe.7G094800 Prunus persica HOM05D005892 ORTHO05D007364 7.8e-107 391.7 337 63.2
Atru.chr8.1369 Acer truncatum HOM05D005892 ORTHO05D007364 5.1e-106 389.0 341 61.3
Thecc.05G104100 Theobroma cacao HOM05D005892 ORTHO05D007364 5.1e-106 389.0 333 62.2
COL.COLO4_29579 Corchorus olitorius HOM05D005892 ORTHO05D007364 4.3e-105 386.0 335 61.8
Hma1.2p1_1525F.1_g288970 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 4.3e-105 386.0 333 62.5
Cpa.g.sc35.59 Carica papaya HOM05D005892 ORTHO05D007364 4.7e-104 382.5 338 60.9
FAN09G4751 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.1e-103 381.3 338 59.8
Nn2g14624 Nelumbo nucifera HOM05D005892 ORTHO05D007364 1.1e-103 381.3 341 59.5
Gohir.A01G201600 Gossypium hirsutum HOM05D005892 ORTHO05D007364 2.3e-103 380.2 334 61.7
MD14G1038600 Malus domestica HOM05D005892 ORTHO05D007364 3.1e-103 379.8 336 62.8
Duzib093G2092 Durio zibethinus HOM05D005892 ORTHO05D007364 8.9e-103 378.3 334 61.1
Gorai.002G235400 Gossypium raimondii HOM05D005892 ORTHO05D007364 8.9e-103 378.3 334 61.4
Potri.016G070700 Populus trichocarpa HOM05D005892 ORTHO05D007364 8.9e-103 378.3 337 58.8
Gohir.D01G191500 Gossypium hirsutum HOM05D005892 ORTHO05D007364 1.5e-102 377.5 334 61.4
PGR142G3547 Punica granatum HOM05D005892 ORTHO05D007364 5.8e-102 375.6 337 60.8
Actinidia12433 Actinidia chinensis HOM05D005892 ORTHO05D007364 7.5e-102 375.2 334 60.8
QL07p036776 Quercus lobata HOM05D005892 ORTHO05D007364 3.7e-101 372.9 392 54.8
TAR633G2239 Trochodendron aralioides HOM05D005892 ORTHO05D007364 7.1e-100 368.6 340 60.0
Eucgr.K02619 Eucalyptus grandis HOM05D005892 ORTHO05D007364 9.2e-100 368.2 351 59.0
DCAR_026818 Daucus carota HOM05D005892 ORTHO05D007364 2.1e-99 367.1 345 58.8
THA.LOC104816617 Tarenaya hassleriana HOM05D005892 ORTHO05D007364 2.7e-99 366.7 336 60.1
CARHR083520 Cardamine hirsuta HOM05D005892 ORTHO05D007364 3.0e-98 363.2 377 54.6
Hund10710 Selenicereus undatus HOM05D005892 ORTHO05D007364 3.9e-98 362.8 337 59.1
BolC5t34536H Brassica oleracea HOM05D005892 ORTHO05D007364 1.1e-97 361.3 377 55.4
BraA05t22764Z Brassica rapa HOM05D005892 ORTHO05D007364 1.5e-97 360.9 377 55.2
A05p39800 Brassica napus HOM05D005892 ORTHO05D007364 3.3e-97 359.8 377 55.4
C05p58840 Brassica napus HOM05D005892 ORTHO05D007364 3.3e-97 359.8 377 55.2
Aa31LG3G1670 Aethionema arabicum HOM05D005892 ORTHO05D007364 5.6e-97 359.0 333 58.3
Peaxi162Scf01139g00002 Petunia axillaris HOM05D005892 ORTHO05D007364 5.6e-97 359.0 341 58.4
CDE02G2672 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 1.6e-96 357.5 355 56.1
ClCG10G018360 Citrullus lanatus HOM05D005892 ORTHO05D007364 2.1e-96 357.1 350 57.1
PSO339G5192 Papaver somniferum HOM05D005892 ORTHO05D007364 2.4e-95 353.6 336 58.0
HanXRQChr16g0527301 Helianthus annuus HOM05D005892 ORTHO05D007364 4.0e-95 352.8 330 58.2
Sed0021278 Sechium edule HOM05D005892 ORTHO05D007364 4.0e-95 352.8 354 55.9
AL3G20290 Arabidopsis lyrata HOM05D005892 ORTHO05D007364 5.2e-95 352.4 377 53.6
CsaV3_3G037930 Cucumis sativus L. HOM05D005892 ORTHO05D007364 5.2e-95 352.4 349 55.9
Nitab4.5_0005476g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 2.0e-94 350.5 349 55.9
AUR62036522 Chenopodium quinoa HOM05D005892 ORTHO05D007364 3.4e-94 349.7 355 56.1
AT3G09180 Arabidopsis thaliana HOM05D005892 ORTHO05D007364 4.4e-94 349.4 332 57.8
MSTRG.13644 Avicennia marina HOM05D005892 ORTHO05D007364 5.8e-94 349.0 349 55.6
Carub.0003s0830 Capsella rubella HOM05D005892 ORTHO05D007364 7.6e-94 348.6 332 57.8
PSO384G1009 Papaver somniferum HOM05D005892 ORTHO05D007364 9.9e-94 348.2 336 57.7
Nitab4.5_0007165g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 3.8e-93 346.3 353 54.7
Haze_20187 Corylus avellana HOM05D005892 ORTHO05D007364 1.9e-92 344.0 295 62.7
Lsat_1_v5_gn_4_22820 Lactuca sativa HOM05D005892 ORTHO05D007364 2.4e-92 343.6 334 55.7
Sp3g07480 Schrenkiella parvula HOM05D005892 ORTHO05D007364 2.4e-92 343.6 331 58.3
BcaC01g06891 Brassica carinata HOM05D005892 ORTHO05D007364 4.2e-92 342.8 377 52.5
C03p43860 Brassica napus HOM05D005892 ORTHO05D007364 2.1e-91 340.5 377 52.0
BolC3t16654H Brassica oleracea HOM05D005892 ORTHO05D007364 2.1e-91 340.5 332 56.6
AUR62042262 Chenopodium quinoa HOM05D005892 ORTHO05D007364 3.5e-91 339.7 323 58.8
EL10Ac9g21147 Beta vulgaris HOM05D005892 ORTHO05D007364 7.8e-91 338.6 356 54.2
Rhsim09G0086500 Rhododendron simsii HOM05D005892 ORTHO05D007364 7.8e-91 338.6 332 57.2
Ah.10g030320 Amaranthus hybridus HOM05D005892 ORTHO05D007364 1.0e-90 338.2 351 53.8
ECA234G1824 Erigeron canadensis HOM05D005892 ORTHO05D007364 1.0e-90 338.2 327 56.3
Thhalv10020833m.g Eutrema salsugineum HOM05D005892 ORTHO05D007364 1.3e-90 337.8 365 53.4
FAN05G1366 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.3e-90 337.8 384 51.6
PGSC0003DMG400006864 Solanum tuberosum HOM05D005892 ORTHO05D007364 1.3e-90 337.8 351 53.8
Sopen01g034280 Solanum pennellii HOM05D005892 ORTHO05D007364 1.7e-90 337.4 343 54.5
BraA03t12793Z Brassica rapa HOM05D005892 ORTHO05D007364 1.1e-89 334.7 378 52.4
Migut.E00525 Erythranthe guttata HOM05D005892 ORTHO05D007364 1.1e-89 334.7 331 55.3
SalBow2G2452 Salvia bowleyana HOM05D005892 ORTHO05D007364 4.3e-89 332.8 343 53.4
MELO3C009537.2 Cucumis melo HOM05D005892 ORTHO05D007364 5.6e-89 332.4 391 50.1
Sabra16G0073000 Salix brachista HOM05D005892 ORTHO05D007364 6.2e-88 328.9 357 51.8
Solyc01g087230.3 Solanum lycopersicum HOM05D005892 ORTHO05D007364 6.2e-88 328.9 343 53.9
A03p36220 Brassica napus HOM05D005892 ORTHO05D007364 3.4e-86 323.2 378 51.6
HPP92_001347 Vanilla planifolia HOM05D005892 ORTHO05D007364 3.4e-86 323.2 344 54.9
FAN05G3684 Fragaria x ananassa HOM05D005892 ORTHO05D007364 7.6e-86 322.0 294 58.8
Sabra16G0070800 Salix brachista HOM05D005892 ORTHO05D007364 7.6e-86 322.0 293 58.4
unitig_52.g17290 Utricularia gibba HOM05D005892 ORTHO05D007364 1.3e-85 321.2 355 53.0
HPP92_001371 Vanilla planifolia HOM05D005892 ORTHO05D007364 1.3e-85 321.2 344 54.1
Os01g0263500 Oryza sativa ssp. japonica HOM05D005892 ORTHO05D007364 2.2e-85 320.5 351 51.9
FAN05G0385 Fragaria x ananassa HOM05D005892 ORTHO05D007364 6.4e-85 318.9 292 59.2
TAR633G0738 Trochodendron aralioides HOM05D005892 ORTHO05D007364 2.7e-83 313.5 297 59.6
Zm00001eb156320 Zea mays HOM05D005892 ORTHO05D007364 2.7e-83 313.5 344 51.5
MBI19_g09306_MAGBIO Magnolia biondii HOM05D005892 ORTHO05D007364 1.7e-82 310.8 301 56.5
CDE04G0639 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 8.7e-82 308.5 376 49.7
Aqoxy1G00010 Aquilegia oxysepala HOM05D005892 ORTHO05D007364 7.3e-81 305.4 363 48.5
Sc07g0007600 Simmondsia chinensis HOM05D005892 ORTHO05D007364 1.3e-80 304.7 293 59.4
Hma1.2p1_1525F.1_g288980 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 8.1e-80 302.0 243 65.8
HPP92_001441 Vanilla planifolia HOM05D005892 ORTHO05D007364 4.0e-79 299.7 344 52.3
CAN.G219.4 Capsicum annuum HOM05D005892 ORTHO05D007364 1.2e-75 288.1 306 52.3
SGA_v2.0_scaffold65G22109 Striga asiatica HOM05D005892 ORTHO05D007364 8.7e-74 282.0 354 48.9
ATR0068G118 Amborella trichopoda HOM05D005892 ORTHO05D007364 2.9e-69 266.9 347 48.1
Zm00001eb348930 Zea mays HOM05D005892 ORTHO05D007364 1.3e-61 241.5 252 52.8
BcaB04g18552 Brassica carinata HOM05D005892 ORTHO05D007364 6.3e-56 222.6 218 55.5
FAN02G1987 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.5e-49 201.4 293 43.0
Pp3c15_4850 Physcomitrium patens HOM05D005892 ORTHO05D007364 1.7e-45 188.0 348 36.8
Mapoly0090s0009 Marchantia polymorpha HOM05D005892 ORTHO05D007364 2.7e-43 180.6 378 34.1
RcHm_v2.0_Chr1g0331111 Rosa chinensis HOM05D005892 ORTHO05D007364 7.4e-41 172.6 142 64.1
RcHm_v2.0_Chr1g0331121 Rosa chinensis HOM05D005892 ORTHO05D007364 1.7e-40 171.4 147 60.5
Nn2g14691 Nelumbo nucifera HOM05D005892 ORTHO05D007364 4.8e-40 169.9 138 64.5
Atru.chr9.699 Acer truncatum HOM05D005892 ORTHO05D007364 9.7e-33 145.6 136 56.6
AagrBONN_evm.TU.Sc2ySwM_228.2745 Anthoceros agrestis HOM05D005892 ORTHO05D007364 1.4e-31 141.7 347 31.1
Peaxi162Scf00684g00585 Petunia axillaris HOM05D005892 ORTHO05D007364 9.7e-25 119.0 269 32.7
Atru.chr9.700 Acer truncatum HOM05D005892 ORTHO05D007364 1.4e-18 98.6 104 55.8
Hma1.2p1_1525F.1_g288960 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 1.5e-17 95.1 93 53.8
BcaC05g29638 Brassica carinata HOM05D005892 ORTHO05D007364 2.6e-17 94.4 99 50.5
CSS0000115 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 3.4e-17 94.0 79 55.7
Aa31sc80G50 Aethionema arabicum HOM05D005892 ORTHO05D007364 2.8e-16 90.9 83 57.8
HPP92_019993 Vanilla planifolia HOM05D002096 ORTHO05D002203 3.1e-15 87.4 208 33.2
SEGI_07863 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 2.0e-06 58.2 74 43.2


User provided reference genes

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