Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G14069 Trifolium pratense HOM05D005182 ORTHO05D006631 2.0e-112 409.1 201 100.0
Medtr6g005390 Medicago truncatula HOM05D005182 ORTHO05D006631 4.3e-99 364.8 201 91.0
Psat1g190920 Pisum sativum HOM05D005182 ORTHO05D006631 4.3e-99 364.8 201 90.5
Ca_04172_v3 Cicer arietinum L. HOM05D005182 ORTHO05D006631 5.3e-97 357.8 201 89.6
Lj2g0004707 Lotus japonicus HOM05D005182 ORTHO05D006631 4.8e-82 308.1 209 77.0
Glyma.05G004900 Glycine max HOM05D005182 ORTHO05D006631 4.1e-81 305.1 209 76.6
VMungo0464G0237 Vigna mungo HOM05D005182 ORTHO05D006631 9.4e-78 293.9 197 76.6
Phvul.004G010800 Phaseolus vulgaris HOM05D005182 ORTHO05D006631 3.6e-77 292.0 207 72.5
Medtr6g005410 Medicago truncatula HOM05D005182 ORTHO05D006631 3.1e-73 278.9 195 73.3
DCAR_011246 Daucus carota HOM05D005182 ORTHO05D006631 1.6e-69 266.5 204 67.2
Manes.17G115200 Manihot esculenta HOM05D005182 ORTHO05D006631 4.7e-69 265.0 151 82.1
Prupe.3G289500 Prunus persica HOM05D005182 ORTHO05D006631 8.0e-69 264.2 205 67.3
PGSC0003DMG400000477 Solanum tuberosum HOM05D005182 ORTHO05D006631 8.0e-69 264.2 173 74.6
MD09G1028700 Malus domestica HOM05D005182 ORTHO05D006631 1.0e-68 263.8 150 81.3
Nitab4.5_0005432g0010 Nicotiana tabacum HOM05D005182 ORTHO05D006631 2.3e-68 262.7 154 79.9
Peaxi162Scf00129g01422 Petunia axillaris HOM05D005182 ORTHO05D006631 5.2e-68 261.5 154 79.2
Nitab4.5_0002682g0020 Nicotiana tabacum HOM05D005182 ORTHO05D006631 6.8e-68 261.2 149 82.6
RcHm_v2.0_Chr2g0173081 Rosa chinensis HOM05D005182 ORTHO05D006631 8.8e-68 260.8 149 81.2
CAN.G1799.12 Capsicum annuum HOM05D005182 ORTHO05D006631 1.5e-67 260.0 161 75.8
Cc07_g01870 Coffea canephora HOM05D005182 ORTHO05D006631 1.5e-67 260.0 153 79.1
Solyc02g086560.3 Solanum lycopersicum HOM05D005182 ORTHO05D006631 1.5e-67 260.0 176 73.3
Sopen02g031300 Solanum pennellii HOM05D005182 ORTHO05D006631 1.5e-67 260.0 154 79.9
Actinidia06755 Actinidia chinensis HOM05D005182 ORTHO05D006631 2.6e-67 259.2 178 73.6
Thecc.04G015200 Theobroma cacao HOM05D005182 ORTHO05D006631 2.6e-67 259.2 174 74.1
CANSAT64G2419 Cannabis sativa HOM05D005182 ORTHO05D006631 5.7e-67 258.1 151 79.5
Atru.chr6.2358 Acer truncatum HOM05D005182 ORTHO05D006631 7.5e-67 257.7 147 83.7
SalBow1G7073 Salvia bowleyana HOM05D005182 ORTHO05D006631 7.5e-67 257.7 191 69.6
Sabra01G0148000 Salix brachista HOM05D005182 ORTHO05D006631 1.3e-66 256.9 149 81.2
MBI16_g14596_MAGBIO Magnolia biondii HOM05D005182 ORTHO05D006631 1.7e-66 256.5 147 81.6
TAR629G2348 Trochodendron aralioides HOM05D005182 ORTHO05D006631 1.7e-66 256.5 171 73.7
Aqoxy3G02839 Aquilegia oxysepala HOM05D005182 ORTHO05D006631 2.2e-66 256.1 200 66.0
Cfa007391 Carpinus fangiana HOM05D005182 ORTHO05D006631 2.2e-66 256.1 150 79.3
MD17G1030300 Malus domestica HOM05D005182 ORTHO05D006631 2.8e-66 255.8 155 79.4
TWI12G0687 Tripterygium wilfordii HOM05D005182 ORTHO05D006631 2.8e-66 255.8 173 71.1
Ciclev10016757m.g Citrus clementina HOM05D005182 ORTHO05D006631 3.7e-66 255.4 168 73.8
Gohir.A07G222400 Gossypium hirsutum HOM05D005182 ORTHO05D006631 3.7e-66 255.4 195 67.2
QL02p075210 Quercus lobata HOM05D005182 ORTHO05D006631 3.7e-66 255.4 185 69.7
Peaxi162Scf00304g01217 Petunia axillaris HOM05D005182 ORTHO05D006631 4.8e-66 255.0 151 78.8
Haze_14718 Corylus avellana HOM05D005182 ORTHO05D006631 6.3e-66 254.6 176 72.2
COL.COLO4_29086 Corchorus olitorius HOM05D005182 ORTHO05D006631 8.3e-66 254.2 209 61.7
Cpa.g.c28071.2 Carica papaya HOM05D005182 ORTHO05D006631 1.4e-65 253.4 191 68.1
Dinv35097 Davidia involucrata HOM05D005182 ORTHO05D006631 1.4e-65 253.4 152 79.6
AUR62032437 Chenopodium quinoa HOM05D005182 ORTHO05D006631 2.4e-65 252.7 147 79.6
Gohir.D07G229100 Gossypium hirsutum HOM05D005182 ORTHO05D006631 2.4e-65 252.7 195 66.2
Gorai.001G264200 Gossypium raimondii HOM05D005182 ORTHO05D006631 2.4e-65 252.7 195 66.2
Potri.001G178800 Populus trichocarpa HOM05D005182 ORTHO05D006631 2.4e-65 252.7 188 66.5
SGA_v2.0_scaffold481G52321 Striga asiatica HOM05D005182 ORTHO05D006631 2.4e-65 252.7 175 69.1
AUR62024784 Chenopodium quinoa HOM05D005182 ORTHO05D006631 3.1e-65 252.3 145 80.7
FAN21G0797 Fragaria x ananassa HOM05D005182 ORTHO05D006631 3.1e-65 252.3 191 67.0
Nn3g16771 Nelumbo nucifera HOM05D005182 ORTHO05D006631 4.1e-65 251.9 148 77.7
ECA246G2600 Erigeron canadensis HOM05D005182 ORTHO05D006631 5.4e-65 251.5 150 78.7
FAN11G2673 Fragaria x ananassa HOM05D005182 ORTHO05D006631 5.4e-65 251.5 191 67.5
FvH4_3g28470 Fragaria vesca HOM05D005182 ORTHO05D006631 7.0e-65 251.1 191 67.5
CiPaw.02G035100 Carya illinoinensis HOM05D005182 ORTHO05D006631 9.1e-65 250.8 181 69.6
Psat1g058400 Pisum sativum HOM05D005182 ORTHO05D006631 1.2e-64 250.4 182 68.7
CsaV3_5G027220 Cucumis sativus L. HOM05D005182 ORTHO05D006631 2.0e-64 249.6 160 73.1
MELO3C021568.2 Cucumis melo HOM05D005182 ORTHO05D006631 2.7e-64 249.2 146 78.8
HanXRQChr17g0548351 Helianthus annuus HOM05D005182 ORTHO05D006631 4.5e-64 248.4 149 78.5
PGR024G0002 Punica granatum HOM05D005182 ORTHO05D006631 5.9e-64 248.1 145 78.6
Eucgr.J02232 Eucalyptus grandis HOM05D005182 ORTHO05D006631 1.0e-63 247.3 148 77.0
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 1.3e-63 246.9 142 82.4
vmacro04855 Vaccinium macrocarpon HOM05D005182 ORTHO05D006631 1.3e-63 246.9 149 79.9
CARHR040200 Cardamine hirsuta HOM05D005182 ORTHO05D006631 2.9e-63 245.7 147 75.5
arahy.Tifrunner.gnm1.ann1.NIKC7C Arachis hypogaea HOM05D005182 ORTHO05D006631 3.8e-63 245.4 177 70.6
arahy.Tifrunner.gnm1.ann1.1JMX4I Arachis hypogaea HOM05D005182 ORTHO05D006631 8.6e-63 244.2 184 69.6
THA.LOC104801894 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 1.1e-62 243.8 147 74.1
Aa31LG10G4000 Aethionema arabicum HOM05D005182 ORTHO05D006631 1.5e-62 243.4 185 63.8
Zm00001eb072570 Zea mays HOM05D005182 ORTHO05D006631 2.5e-62 242.7 172 66.9
Cfa007386 Carpinus fangiana HOM05D005182 ORTHO05D006631 4.2e-62 241.9 142 79.6
AL1G57790 Arabidopsis lyrata HOM05D005182 ORTHO05D006631 5.5e-62 241.5 147 74.1
PGR142G3360 Punica granatum HOM05D005182 ORTHO05D006631 5.5e-62 241.5 145 77.9
EL10Ac2g02464 Beta vulgaris HOM05D005182 ORTHO05D006631 7.2e-62 241.1 171 68.4
Thhalv10011756m.g Eutrema salsugineum HOM05D005182 ORTHO05D006631 7.2e-62 241.1 148 74.3
Carub.0001s3930 Capsella rubella HOM05D005182 ORTHO05D006631 9.5e-62 240.7 147 74.1
Migut.H00088 Erythranthe guttata HOM05D005182 ORTHO05D006631 9.5e-62 240.7 191 68.6
Sed0010591 Sechium edule HOM05D005182 ORTHO05D006631 9.5e-62 240.7 193 62.7
THA.LOC104807109 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 1.6e-61 240.0 175 64.6
A08p03300 Brassica napus HOM05D005182 ORTHO05D006631 2.1e-61 239.6 147 72.8
CDE06G0683 Ceratophyllum demersum HOM05D005182 ORTHO05D006631 3.6e-61 238.8 193 59.6
AT1G50170 Arabidopsis thaliana HOM05D005182 ORTHO05D006631 4.7e-61 238.4 147 73.5
Sp1g37040 Schrenkiella parvula HOM05D005182 ORTHO05D006631 4.7e-61 238.4 147 72.8
C03p89510 Brassica napus HOM05D005182 ORTHO05D006631 1.4e-60 236.9 147 72.8
BolC3t21265H Brassica oleracea HOM05D005182 ORTHO05D006631 1.4e-60 236.9 147 72.8
ATR0661G518 Amborella trichopoda HOM05D005182 ORTHO05D006631 1.8e-60 236.5 147 71.4
BraA08t32363Z Brassica rapa HOM05D005182 ORTHO05D006631 2.3e-60 236.1 147 72.1
Rhsim02G0095200 Rhododendron simsii HOM05D005182 ORTHO05D006631 6.8e-60 234.6 195 62.6
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 1.5e-59 233.4 149 74.5
Oeu057055.1 Olea europaea HOM05D005182 ORTHO05D006631 7.8e-56 221.1 126 80.2
Psat1g058360 Pisum sativum HOM05D005182 ORTHO05D006631 7.8e-56 221.1 148 70.9
CiPaw.03G042000 Carya illinoinensis HOM05D005182 ORTHO05D006631 5.0e-55 218.4 145 75.9
GSVIVG01032428001 Vitis vinifera HOM05D005182 ORTHO05D006631 6.6e-55 218.0 121 83.5
Rhsim09G0149800 Rhododendron simsii HOM05D005182 ORTHO05D006631 4.3e-54 215.3 157 68.2
Sed0025592 Sechium edule HOM05D005182 ORTHO05D006631 1.6e-53 213.4 146 71.2
ClCG00G002150 Citrullus lanatus HOM05D005182 ORTHO05D006631 4.7e-53 211.8 163 66.3
ClCG09G019170 Citrullus lanatus HOM05D005182 ORTHO05D006631 4.7e-53 211.8 163 66.3
Hma1.2p1_1291F.1_g273570 Hydrangea macrophylla HOM05D005182 ORTHO05D006631 4.7e-53 211.8 121 79.3
unitig_746.g26550 Utricularia gibba HOM05D005182 ORTHO05D006631 1.0e-52 210.7 126 77.0
SMO356G0462 Selaginella moellendorffii HOM05D005182 ORTHO05D006631 2.3e-52 209.5 147 61.9
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 2.9e-50 202.6 144 62.5
arahy.Tifrunner.gnm1.ann1.0YQ56L Arachis hypogaea HOM05D005182 ORTHO05D006631 8.3e-50 201.1 153 65.4
MSTRG.3153 Avicennia marina HOM05D005182 ORTHO05D006631 2.4e-49 199.5 113 84.1
RcHm_v2.0_Chr1g0351301 Rosa chinensis HOM05D005182 ORTHO05D006631 2.4e-49 199.5 187 58.3
Dinv33456 Davidia involucrata HOM05D005182 ORTHO05D006631 9.2e-49 197.6 171 61.4
SHI25748 Sapria himalayana HOM05D005182 ORTHO05D006631 1.0e-47 194.1 145 65.5
CBR_g4824 Chara braunii HOM05D005182 ORTHO05D006631 2.3e-47 193.0 139 62.6
CSS0002021 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 1.2e-45 187.2 117 77.8
Cpa.g.sc130.27 Carica papaya HOM05D005182 ORTHO05D006631 6.2e-45 184.9 113 78.8
SEGI_02514 Sequoiadendron giganteum HOM05D005182 ORTHO05D006631 3.4e-43 179.1 118 72.0
QL09p000526 Quercus lobata HOM05D005182 ORTHO05D006631 7.5e-43 177.9 100 81.0
BcaC01g01215 Brassica carinata HOM05D005182 ORTHO05D006631 9.8e-43 177.6 147 57.8
FvH4_6g51400 Fragaria vesca HOM05D005182 ORTHO05D006631 1.3e-42 177.2 123 67.5
FAN14G1378 Fragaria x ananassa HOM05D005182 ORTHO05D006631 1.3e-42 177.2 123 67.5
MCO08G118 Micromonas commoda HOM05D005182 ORTHO05D006631 3.7e-42 175.6 133 60.2
Os02g0296800 Oryza sativa ssp. japonica HOM05D005182 ORTHO05D006631 4.9e-42 175.3 108 70.4
Hund03875 Selenicereus undatus HOM05D005182 ORTHO05D006631 3.2e-41 172.6 163 58.9
CiPaw.02G035200 Carya illinoinensis HOM05D005182 ORTHO05D006631 1.2e-40 170.6 100 77.0
Cpa.g.sc130.26 Carica papaya HOM05D005182 ORTHO05D006631 1.6e-40 170.2 106 77.4
Mapoly0034s0026 Marchantia polymorpha HOM05D005182 ORTHO05D006631 7.8e-40 167.9 118 65.3
Sc19g0005880 Simmondsia chinensis HOM05D005182 ORTHO05D006631 7.8e-40 167.9 144 60.4
Duzib187G0244 Durio zibethinus HOM05D005182 ORTHO05D006631 3.0e-39 166.0 101 76.2
Ah.12g060430 Amaranthus hybridus HOM05D005182 ORTHO05D006631 8.6e-39 164.5 171 53.2
AagrBONN_evm.TU.Sc2ySwM_228.389 Anthoceros agrestis HOM05D005182 ORTHO05D006631 2.6e-35 152.9 98 65.3
MSTRG.15523 Avicennia marina HOM05D005182 ORTHO05D006631 2.3e-31 139.8 145 55.2
arahy.Tifrunner.gnm1.ann1.C5A6Z1 Arachis hypogaea HOM05D005182 ORTHO05D006631 1.5e-30 137.1 117 59.0
Cre04.g214100 Chlamydomonas reinhardtii HOM05D005182 ORTHO05D006631 5.2e-28 128.6 139 42.4
Prupe.3G289700 Prunus persica HOM05D005182 ORTHO05D006631 6.8e-28 128.3 74 77.0
Glyma.17G203751 Glycine max HOM05D005182 ORTHO05D006631 2.9e-26 122.9 75 72.0
EL10Ac6g14578 Beta vulgaris HOM05D002842 ORTHO05D003177 8.4e-26 121.3 100 64.0
EL10Ac5g10908 Beta vulgaris HOM05D005182 ORTHO05D006631 2.4e-25 119.8 100 63.0
EL10Ac6g13785 Beta vulgaris HOM05D005182 ORTHO05D006631 5.4e-25 118.6 100 63.0
FAN05G5577 Fragaria x ananassa HOM05D005182 ORTHO05D006631 2.1e-24 116.7 93 61.3
Cpa.g.sc171.39 Carica papaya HOM05D005182 ORTHO05D006631 1.1e-22 110.9 68 75.0
Hund04415 Selenicereus undatus HOM05D005182 ORTHO05D006631 9.6e-22 107.8 63 76.2
Prupe.3G207400 Prunus persica HOM05D005182 ORTHO05D006631 1.4e-20 104.0 85 63.5
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 2.6e-19 99.8 90 50.0
Ah.15g100150 Amaranthus hybridus HOM05D008863 ORTHO05D006631 4.4e-19 99.0 61 68.9
RcHm_v2.0_Chr7g0228061 Rosa chinensis HOM05D005182 ORTHO05D006631 1.7e-18 97.1 81 59.3
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 4.9e-18 95.5 67 67.2
QL10p029699 Quercus lobata HOM05D002292 ORTHO05D008330 4.9e-18 95.5 56 78.6
Cpa.g.c30633.2 Carica papaya HOM05D005182 ORTHO05D006631 3.5e-16 89.4 58 67.2
PRCOL_00005828 Prasinoderma coloniale HOM05D005182 ORTHO05D006631 1.5e-14 84.0 80 47.5
Zm00001eb085260 Zea mays HOM05D005182 ORTHO05D006631 2.4e-12 76.6 98 45.9
Glyma.19G005502 Glycine max HOM05D005182 ORTHO05D006631 9.9e-11 71.2 88 59.1
RcHm_v2.0_Chr7g0228091 Rosa chinensis HOM05D005182 ORTHO05D344069 4.6e-08 62.4 96 37.5
Dinv33459 Davidia involucrata HOM05D005182 ORTHO05D006631 7.9e-08 61.6 33 78.8


User provided reference genes

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