Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G14051 Trifolium pratense HOM05D000671 ORTHO05D049463 1.4e-37 159.1 80 100.0
TPR.G24054 Trifolium pratense HOM05D000671 ORTHO05D004414 4.8e-25 117.5 66 92.4
Aa31LG7G5830 Aethionema arabicum HOM05D000671 ORTHO05D004414 6.9e-24 113.6 68 86.8
Aa31LG4G7720 Aethionema arabicum HOM05D000671 ORTHO05D004414 9.1e-24 113.2 68 85.3
vmacro00830 Vaccinium macrocarpon HOM05D000671 ORTHO05D004414 9.1e-24 113.2 68 85.3
BcaB03g11882 Brassica carinata HOM05D000671 ORTHO05D004414 1.5e-23 112.5 68 83.8
BcaC07g39125 Brassica carinata HOM05D000671 ORTHO05D004414 1.5e-23 112.5 68 83.8
A08p28780 Brassica napus HOM05D000671 ORTHO05D004414 1.5e-23 112.5 68 83.8
C08p21140 Brassica napus HOM05D000671 ORTHO05D004414 1.5e-23 112.5 68 83.8
BolC8t49754H Brassica oleracea HOM05D000671 ORTHO05D004414 1.5e-23 112.5 68 83.8
BraA08t34807Z Brassica rapa HOM05D000671 ORTHO05D004414 1.5e-23 112.5 68 83.8
Medtr3g072380 Medicago truncatula HOM05D000671 ORTHO05D004414 1.5e-23 112.5 66 87.9
Sp1g19410 Schrenkiella parvula HOM05D000671 ORTHO05D004414 1.5e-23 112.5 68 83.8
THA.LOC104813654 Tarenaya hassleriana HOM05D000671 ORTHO05D004414 1.5e-23 112.5 68 85.3
AT1G21870 Arabidopsis thaliana HOM05D000671 ORTHO05D004414 2.0e-23 112.1 68 83.8
AT1G77610 Arabidopsis thaliana HOM05D000671 ORTHO05D004414 2.0e-23 112.1 68 83.8
Carub.0002s2450 Capsella rubella HOM05D000671 ORTHO05D004414 2.0e-23 112.1 68 83.8
COL.COLO4_35938 Corchorus olitorius HOM05D000671 ORTHO05D004414 2.0e-23 112.1 66 86.4
Duzib041G0671 Durio zibethinus HOM05D000671 ORTHO05D004414 2.0e-23 112.1 66 86.4
Duzib116G0465 Durio zibethinus HOM05D000671 ORTHO05D004414 2.0e-23 112.1 66 86.4
Thhalv10018828m.g Eutrema salsugineum HOM05D000671 ORTHO05D004414 2.0e-23 112.1 68 83.8
Manes.02G162600 Manihot esculenta HOM05D000671 ORTHO05D004414 2.0e-23 112.1 68 83.8
THA.LOC104800188 Tarenaya hassleriana HOM05D000671 ORTHO05D004414 2.0e-23 112.1 68 83.8
GSVIVG01008878001 Vitis vinifera HOM05D000671 ORTHO05D004414 2.0e-23 112.1 68 83.8
Duzib093G1798 Durio zibethinus HOM05D000671 ORTHO05D004414 2.6e-23 111.7 66 84.8
Thecc.08G124000 Theobroma cacao HOM05D000671 ORTHO05D004414 2.6e-23 111.7 66 84.8
AL1G35070 Arabidopsis lyrata HOM05D000671 ORTHO05D004414 3.4e-23 111.3 68 82.4
CARHR022220 Cardamine hirsuta HOM05D000671 ORTHO05D004414 3.4e-23 111.3 68 83.8
Cpa.g.sc36.58 Carica papaya HOM05D000671 ORTHO05D004414 3.4e-23 111.3 68 83.8
Peaxi162Scf00051g00087 Petunia axillaris HOM05D000671 ORTHO05D004414 3.4e-23 111.3 68 82.4
C06p51640 Brassica napus HOM05D000671 ORTHO05D004414 4.5e-23 110.9 68 83.8
BolC6t40182H Brassica oleracea HOM05D000671 ORTHO05D004414 4.5e-23 110.9 68 83.8
Gohir.A02G073200 Gossypium hirsutum HOM05D000671 ORTHO05D004414 4.5e-23 110.9 68 85.3
Gorai.005G089900 Gossypium raimondii HOM05D000671 ORTHO05D004414 4.5e-23 110.9 68 85.3
Lj1g0021001 Lotus japonicus HOM05D000671 ORTHO05D004414 4.5e-23 110.9 66 86.4
Psat6g040960 Pisum sativum HOM05D000671 ORTHO05D004414 4.5e-23 110.9 66 86.4
AL142U10020 Arabidopsis lyrata HOM05D000671 ORTHO05D004414 5.9e-23 110.5 68 82.4
BcaB02g07114 Brassica carinata HOM05D000671 ORTHO05D004414 5.9e-23 110.5 68 82.4
BcaC08g47601 Brassica carinata HOM05D000671 ORTHO05D004414 5.9e-23 110.5 68 82.4
A07p43000 Brassica napus HOM05D000671 ORTHO05D004414 5.9e-23 110.5 68 82.4
BraA07t31821Z Brassica rapa HOM05D000671 ORTHO05D004414 5.9e-23 110.5 68 82.4
CARHR071120 Cardamine hirsuta HOM05D000671 ORTHO05D004414 5.9e-23 110.5 68 80.9
Cfa016010 Carpinus fangiana HOM05D000671 ORTHO05D004414 5.9e-23 110.5 68 83.8
Haze_00446 Corylus avellana HOM05D000671 ORTHO05D004414 5.9e-23 110.5 68 83.8
Thhalv10009473m.g Eutrema salsugineum HOM05D000671 ORTHO05D004414 5.9e-23 110.5 68 82.4
TPR.G25797 Trifolium pratense HOM05D000671 ORTHO05D004414 5.9e-23 110.5 68 83.8
BcaB03g15941 Brassica carinata HOM05D000671 ORTHO05D004414 7.7e-23 110.2 68 80.9
C06p31160 Brassica napus HOM05D000671 ORTHO05D004414 7.7e-23 110.2 66 83.3
CAN.G1040.13 Capsicum annuum HOM05D000671 ORTHO05D004414 7.7e-23 110.2 68 80.9
Gohir.D05G237000 Gossypium hirsutum HOM05D000671 ORTHO05D004414 7.7e-23 110.2 66 83.3
Gorai.009G245400 Gossypium raimondii HOM05D000671 ORTHO05D004414 7.7e-23 110.2 66 83.3
Hma1.2p1_0186F.1_g081750 Hydrangea macrophylla HOM05D000671 ORTHO05D004414 7.7e-23 110.2 68 80.9
MD08G1164800 Malus domestica HOM05D000671 ORTHO05D004414 7.7e-23 110.2 68 82.4
MD15G1350800 Malus domestica HOM05D000671 ORTHO05D004414 7.7e-23 110.2 68 82.4
Medtr1g030320 Medicago truncatula HOM05D000671 ORTHO05D004414 7.7e-23 110.2 68 83.8
Psat5g132080 Pisum sativum HOM05D000671 ORTHO05D004414 7.7e-23 110.2 66 87.9
Sabra02G0066000 Salix brachista HOM05D000671 ORTHO05D004414 7.7e-23 110.2 68 82.4
VMungo1309G0646 Vigna mungo HOM05D000671 ORTHO05D004414 7.7e-23 110.2 66 86.4
Actinidia02616 Actinidia chinensis HOM05D000671 ORTHO05D004414 1.0e-22 109.8 68 80.9
CiPaw.05G222600 Carya illinoinensis HOM05D000671 ORTHO05D004414 1.0e-22 109.8 68 80.9
CiPaw.06G030400 Carya illinoinensis HOM05D000671 ORTHO05D004414 1.0e-22 109.8 68 83.8
Ca_15189_v3 Cicer arietinum L. HOM05D000671 ORTHO05D004414 1.0e-22 109.8 66 86.4
Glyma.13G080400 Glycine max HOM05D000671 ORTHO05D004414 1.0e-22 109.8 66 84.8
Glyma.14G148900 Glycine max HOM05D000671 ORTHO05D004414 1.0e-22 109.8 66 84.8
Manes.18G076500 Manihot esculenta HOM05D000671 ORTHO05D004414 1.0e-22 109.8 68 80.9
Nn1g08751 Nelumbo nucifera HOM05D000671 ORTHO05D004414 1.0e-22 109.8 68 82.4
Oeu040423.1 Olea europaea HOM05D000671 ORTHO05D004414 1.0e-22 109.8 68 82.4
Solyc06g060370.3 Solanum lycopersicum HOM05D000671 ORTHO05D004414 1.0e-22 109.8 68 80.9
PGSC0003DMG400017572 Solanum tuberosum HOM05D000671 ORTHO05D004414 1.0e-22 109.8 68 80.9
Cc00_g04260 Coffea canephora HOM05D000671 ORTHO05D004414 1.3e-22 109.4 68 80.9
DCAR_014090 Daucus carota HOM05D000671 ORTHO05D004414 1.3e-22 109.4 68 82.4
Glyma.04G250000 Glycine max HOM05D000671 ORTHO05D004414 1.3e-22 109.4 66 84.8
Glyma.06G112800 Glycine max HOM05D000671 ORTHO05D004414 1.3e-22 109.4 66 84.8
TWI36G0716 Tripterygium wilfordii HOM05D000671 ORTHO05D004414 1.3e-22 109.4 68 83.8
TWI56G0190 Tripterygium wilfordii HOM05D000671 ORTHO05D004414 1.3e-22 109.4 68 83.8
Atru.chr13.1447 Acer truncatum HOM05D000671 ORTHO05D004414 1.7e-22 109.0 66 80.3
Atru.chr13.1471 Acer truncatum HOM05D000671 ORTHO05D004414 1.7e-22 109.0 66 80.3
Actinidia23074 Actinidia chinensis HOM05D000671 ORTHO05D004414 1.7e-22 109.0 68 80.9
CSS0020763 Camellia sinensis var. sinensis HOM05D000671 ORTHO05D004414 1.7e-22 109.0 68 82.4
CSS0040543 Camellia sinensis var. sinensis HOM05D000671 ORTHO05D004414 1.7e-22 109.0 68 80.9
CSS0047904 Camellia sinensis var. sinensis HOM05D000671 ORTHO05D004414 1.7e-22 109.0 68 82.4
RcHm_v2.0_Chr6g0295661 Rosa chinensis HOM05D000671 ORTHO05D004414 1.7e-22 109.0 68 83.8
Sabra05G0133800 Salix brachista HOM05D000671 ORTHO05D004414 1.7e-22 109.0 68 80.9
Dinv27322 Davidia involucrata HOM05D000671 ORTHO05D004414 2.2e-22 108.6 68 79.4
Potri.005G177200 Populus trichocarpa HOM05D000671 ORTHO05D004414 2.2e-22 108.6 68 79.4
SGA_v2.0_scaffold28G12001 Striga asiatica HOM05D000671 ORTHO05D004414 2.2e-22 108.6 68 80.9
arahy.Tifrunner.gnm1.ann1.BDH7ZM Arachis hypogaea HOM05D000671 ORTHO05D004414 2.9e-22 108.2 66 84.8
arahy.Tifrunner.gnm1.ann1.NY6I93 Arachis hypogaea HOM05D000671 ORTHO05D004414 2.9e-22 108.2 66 84.8
FAN15G2179 Fragaria x ananassa HOM05D000671 ORTHO05D004414 2.9e-22 108.2 68 82.4
FAN20G0237 Fragaria x ananassa HOM05D000671 ORTHO05D004414 2.9e-22 108.2 68 82.4
FAN27G3513 Fragaria x ananassa HOM05D000671 ORTHO05D004414 2.9e-22 108.2 68 82.4
Gohir.D02G080500 Gossypium hirsutum HOM05D000671 ORTHO05D004414 2.9e-22 108.2 68 83.8
Lalb_Chr10g0101761 Lupinus albus HOM05D000671 ORTHO05D004414 2.9e-22 108.2 68 82.4
RhsimUnG0093100 Rhododendron simsii HOM05D000671 ORTHO05D004414 2.9e-22 108.2 68 82.4
MSTRG.1449 Avicennia marina HOM05D000671 ORTHO05D004414 3.8e-22 107.8 68 79.4
Carub.0001s2134 Capsella rubella HOM05D000671 ORTHO05D004414 3.8e-22 107.8 61 86.9
Dinv07227 Davidia involucrata HOM05D000671 ORTHO05D004414 3.8e-22 107.8 68 79.4
Oeu017293.2 Olea europaea HOM05D000671 ORTHO05D004414 3.8e-22 107.8 68 80.9
Potri.002G084500 Populus trichocarpa HOM05D000671 ORTHO05D004414 3.8e-22 107.8 68 79.4
SGA_v2.0_scaffold52G18971 Striga asiatica HOM05D000671 ORTHO05D004414 3.8e-22 107.8 68 80.9
A07p27910 Brassica napus HOM05D000671 ORTHO05D004414 5.0e-22 107.5 68 80.9
BraA07t30439Z Brassica rapa HOM05D000671 ORTHO05D004414 5.0e-22 107.5 68 80.9
Ciclev10001739m.g Citrus clementina HOM05D000671 ORTHO05D004414 5.0e-22 107.5 66 81.8
Oeu050915.3 Olea europaea HOM05D000671 ORTHO05D004414 5.0e-22 107.5 66 81.8
ATR1134G100 Amborella trichopoda HOM05D000671 ORTHO05D004414 6.5e-22 107.1 68 80.9
EL10Ac1g01054 Beta vulgaris HOM05D000671 ORTHO05D004414 6.5e-22 107.1 68 79.4
Eucgr.F03784 Eucalyptus grandis HOM05D000671 ORTHO05D004414 6.5e-22 107.1 68 80.9
Lj4A623G14 Lonicera japonica HOM05D000671 ORTHO05D004414 6.5e-22 107.1 68 77.9
Lalb_Chr04g0253421 Lupinus albus HOM05D000671 ORTHO05D004414 6.5e-22 107.1 68 80.9
Prupe.1G499700 Prunus persica HOM05D000671 ORTHO05D004414 6.5e-22 107.1 68 79.4
THA.LOC104817297 Tarenaya hassleriana HOM05D000671 ORTHO05D004414 6.5e-22 107.1 66 80.3
AUR62019045 Chenopodium quinoa HOM05D000671 ORTHO05D004414 8.5e-22 106.7 68 77.9
AUR62027885 Chenopodium quinoa HOM05D000671 ORTHO05D004414 8.5e-22 106.7 68 77.9
Migut.N03285 Erythranthe guttata HOM05D000671 ORTHO05D004414 8.5e-22 106.7 68 79.4
PGR042G3863 Punica granatum HOM05D000671 ORTHO05D004414 8.5e-22 106.7 68 80.9
SGA_v2.0_scaffold25G11122 Striga asiatica HOM05D000671 ORTHO05D004414 8.5e-22 106.7 68 80.9
ATR0810G243 Amborella trichopoda HOM05D000671 ORTHO05D004414 1.1e-21 106.3 68 80.9
ClCG11G015700 Citrullus lanatus HOM05D000671 ORTHO05D004414 1.1e-21 106.3 68 79.4
MELO3C010474.2 Cucumis melo HOM05D000671 ORTHO05D004414 1.1e-21 106.3 68 79.4
Lj1g0021857 Lotus japonicus HOM05D000671 ORTHO05D004414 1.1e-21 106.3 66 80.3
Nitab4.5_0000633g0200 Nicotiana tabacum HOM05D000671 ORTHO05D004414 1.1e-21 106.3 61 83.6
Nitab4.5_0004882g0020 Nicotiana tabacum HOM05D000671 ORTHO05D004414 1.1e-21 106.3 61 83.6
SalBow7G4705 Salvia bowleyana HOM05D000671 ORTHO05D004414 1.1e-21 106.3 68 79.4
TAR376G0502 Trochodendron aralioides HOM05D000671 ORTHO05D004414 1.1e-21 106.3 68 79.4
TAR628G0319 Trochodendron aralioides HOM05D000671 ORTHO05D004414 1.1e-21 106.3 68 79.4
Actinidia06598 Actinidia chinensis HOM05D000671 ORTHO05D004414 1.4e-21 105.9 61 83.6
CsaV3_4G028310 Cucumis sativus L. HOM05D000671 ORTHO05D004414 1.4e-21 105.9 68 77.9
Oeu026149.1 Olea europaea HOM05D000671 ORTHO05D004414 1.4e-21 105.9 68 80.9
DCAR_017423 Daucus carota HOM05D000671 ORTHO05D004414 1.9e-21 105.5 68 80.9
Hund16857 Selenicereus undatus HOM05D000671 ORTHO05D004414 1.9e-21 105.5 68 77.9
CANSAT25G1020 Cannabis sativa HOM05D000671 ORTHO05D004414 2.5e-21 105.1 68 77.9
HanXRQChr05g0150541 Helianthus annuus HOM05D000671 ORTHO05D004414 2.5e-21 105.1 68 77.9
Lalb_Chr17g0343771 Lupinus albus HOM05D000671 ORTHO05D004414 2.5e-21 105.1 66 80.3
Nn5g28256 Nelumbo nucifera HOM05D000671 ORTHO05D004414 2.5e-21 105.1 68 79.4
vmacro12534 Vaccinium macrocarpon HOM05D000671 ORTHO05D004414 2.5e-21 105.1 61 85.2
Migut.C01136 Erythranthe guttata HOM05D000671 ORTHO05D004414 3.2e-21 104.8 68 79.4
Phvul.009G124700 Phaseolus vulgaris HOM05D000671 ORTHO05D004414 4.2e-21 104.4 66 83.3
Sc01g0001160 Simmondsia chinensis HOM05D000671 ORTHO05D004414 4.2e-21 104.4 68 76.5
FvH4_2g26800 Fragaria vesca HOM05D000671 ORTHO05D004414 5.5e-21 104.0 61 85.2
FAN24G1882 Fragaria x ananassa HOM05D000671 ORTHO05D004414 5.5e-21 104.0 61 85.2
Hund27021 Selenicereus undatus HOM05D000671 ORTHO05D004414 5.5e-21 104.0 68 77.9
Dinv07457 Davidia involucrata HOM05D000671 ORTHO05D004414 7.2e-21 103.6 68 77.9
Sopen06g020510 Solanum pennellii HOM05D000671 ORTHO05D004414 7.2e-21 103.6 60 83.3
PSO170G1463 Papaver somniferum HOM05D000671 ORTHO05D004414 9.4e-21 103.2 68 76.5
PSO528G0026 Papaver somniferum HOM05D000671 ORTHO05D004414 9.4e-21 103.2 68 76.5
Sed0024953 Sechium edule HOM05D000671 ORTHO05D004414 9.4e-21 103.2 68 76.5
QL09p035226 Quercus lobata HOM05D000671 ORTHO05D004414 1.2e-20 102.8 61 82.0
HPP92_025162 Vanilla planifolia HOM05D000671 ORTHO05D004414 1.2e-20 102.8 68 76.5
Solyc11g012880.2 Solanum lycopersicum HOM05D000671 ORTHO05D004414 1.6e-20 102.4 68 77.9
CDE08G1540 Ceratophyllum demersum HOM05D000671 ORTHO05D004414 2.7e-20 101.7 68 76.5
DCAR_011618 Daucus carota HOM05D000671 ORTHO05D004414 2.7e-20 101.7 61 78.7
Lsat_1_v5_gn_6_109681 Lactuca sativa HOM05D000671 ORTHO05D004414 2.7e-20 101.7 61 82.0
Lj7C339G13 Lonicera japonica HOM05D000671 ORTHO05D004414 2.7e-20 101.7 66 80.3
TAR381G0936 Trochodendron aralioides HOM05D000671 ORTHO05D004414 2.7e-20 101.7 68 75.0
Os08g0104900 Oryza sativa ssp. japonica HOM05D000671 ORTHO05D004414 3.6e-20 101.3 68 75.0
Lalb_Chr08g0241471 Lupinus albus HOM05D000671 ORTHO05D004414 4.7e-20 100.9 61 82.0
Os04g0692000 Oryza sativa ssp. japonica HOM05D000671 ORTHO05D004414 4.7e-20 100.9 66 77.3
Aqoxy6G00204 Aquilegia oxysepala HOM05D000671 ORTHO05D004414 7.9e-20 100.1 68 73.5
Sed0003658 Sechium edule HOM05D000671 ORTHO05D004414 7.9e-20 100.1 68 73.5
MSTRG.25386 Avicennia marina HOM05D000671 ORTHO05D004414 1.0e-19 99.8 68 73.5
ECA246G4462 Erigeron canadensis HOM05D000671 ORTHO05D004414 1.0e-19 99.8 68 75.0
Pp3c26_10920 Physcomitrium patens HOM05D000671 ORTHO05D004414 8.8e-19 96.7 68 70.6
Pp3c4_24270 Physcomitrium patens HOM05D000671 ORTHO05D004414 1.1e-18 96.3 68 72.1
SEGI_03577 Sequoiadendron giganteum HOM05D000671 ORTHO05D004414 6.3e-17 90.5 68 69.1
CBR_g20173 Chara braunii HOM05D000671 ORTHO05D004414 9.1e-16 86.7 66 62.1
FAN15G0640 Fragaria x ananassa HOM05D000671 ORTHO05D004414 3.5e-15 84.7 56 78.6
SMO174G0177 Selaginella moellendorffii HOM05D000671 ORTHO05D004414 5.0e-14 80.9 66 57.6
Nitab4.5_0001803g0060 Nicotiana tabacum HOM05D000671 ORTHO05D004414 3.6e-12 74.7 67 61.2
Oeu044909.1 Olea europaea HOM05D000671 ORTHO05D049463 4.0e-11 71.2 53 66.0
Psat0s2506g0040 Pisum sativum HOM05D002474 ORTHO05D007142 3.3e-10 68.2 42 81.0
AL2G37820 Arabidopsis lyrata HOM05D000671 ORTHO05D004414 2.9e-06 55.1 37 75.7


User provided reference genes

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