Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1405 Trifolium pratense HOM05D027356 ORTHO05D412595 8.7e-224 780.0 402 100.0
TPR.G8659 Trifolium pratense HOM05D027356 ORTHO05D007801 3.7e-25 120.2 136 43.4
TPR.G8861 Trifolium pratense HOM05D027356 ORTHO05D007801 1.1e-24 118.6 150 40.7
TPR.G38538 Trifolium pratense HOM05D011040 ORTHO05D010133 4.7e-20 103.2 131 42.0
TPR.G17763 Trifolium pratense HOM05D007499 ORTHO05D009491 6.2e-20 102.8 131 40.5
TPR.G14685 Trifolium pratense HOM05D028938 ORTHO05D000174 3.4e-18 97.1 131 40.5
TPR.G26472 Trifolium pratense HOM05D000096 ORTHO05D000045 9.8e-18 95.5 122 41.0
TPR.G16827 Trifolium pratense HOM05D000096 ORTHO05D000045 3.7e-17 93.6 136 36.8
TPR.G38734 Trifolium pratense HOM05D027356 ORTHO05D009491 5.4e-16 89.7 114 39.5
TPR.G15510 Trifolium pratense HOM05D030652 ORTHO05D000174 5.0e-14 83.2 122 36.9
TPR.G14129 Trifolium pratense HOM05D007499 ORTHO05D009491 1.1e-11 75.5 95 44.2
Psat6g091520 Pisum sativum HOM05D003748 ORTHO05D004108 8.9e-11 72.4 123 41.5
Cc10_g10370 Coffea canephora HOM05D003748 ORTHO05D004108 1.5e-10 71.6 71 45.1
TAR381G1195 Trochodendron aralioides HOM05D003748 ORTHO05D004108 2.0e-10 71.2 99 38.4
Peaxi162Scf00268g01130 Petunia axillaris HOM05D003748 ORTHO05D004108 3.4e-10 70.5 100 38.0
VMungo0720G2071 Vigna mungo HOM05D003748 ORTHO05D004108 3.4e-10 70.5 71 47.9
TPR.G22711 Trifolium pratense HOM05D003748 ORTHO05D004108 5.8e-10 69.7 117 37.6
Sp5g27020 Schrenkiella parvula HOM05D003748 ORTHO05D004108 7.5e-10 69.3 72 45.8
A02p17590 Brassica napus HOM05D003748 ORTHO05D004108 1.3e-09 68.6 102 38.2
BraA02t06805Z Brassica rapa HOM05D003748 ORTHO05D004108 1.3e-09 68.6 102 38.2
Lj5g0010218 Lotus japonicus HOM05D003748 ORTHO05D004108 1.3e-09 68.6 71 46.5
Lalb_Chr19g0129451 Lupinus albus HOM05D003748 ORTHO05D004108 1.3e-09 68.6 127 35.4
COL.COLO4_04234 Corchorus olitorius HOM05D003748 ORTHO05D004108 1.7e-09 68.2 71 46.5
HanXRQChr09g0260341 Helianthus annuus HOM05D003748 ORTHO05D004108 2.2e-09 67.8 71 45.1
PGSC0003DMG400026076 Solanum tuberosum HOM05D003748 ORTHO05D004108 2.2e-09 67.8 73 42.5
THA.LOC104809742 Tarenaya hassleriana HOM05D003748 ORTHO05D004108 2.2e-09 67.8 100 39.0
Duzib177G0476 Durio zibethinus HOM05D003748 ORTHO05D004108 2.9e-09 67.4 71 46.5
Migut.N03349 Erythranthe guttata HOM05D003748 ORTHO05D004108 2.9e-09 67.4 99 38.4
Phvul.007G245700 Phaseolus vulgaris HOM05D003748 ORTHO05D004108 2.9e-09 67.4 108 39.8
Rhsim06G0096300 Rhododendron simsii HOM05D003748 ORTHO05D004108 2.9e-09 67.4 71 40.8
unitig_61.g26074 Utricularia gibba HOM05D003748 ORTHO05D004108 2.9e-09 67.4 103 35.0
arahy.Tifrunner.gnm1.ann1.2U5UH6 Arachis hypogaea HOM05D003748 ORTHO05D004108 3.7e-09 67.0 71 45.1
arahy.Tifrunner.gnm1.ann1.W37VG6 Arachis hypogaea HOM05D003748 ORTHO05D004108 3.7e-09 67.0 71 45.1
CiPaw.07G159900 Carya illinoinensis HOM05D003748 ORTHO05D004108 3.7e-09 67.0 71 46.5
FvH4_6g27310 Fragaria vesca HOM05D003748 ORTHO05D004108 3.7e-09 67.0 69 49.3
FAN02G3522 Fragaria x ananassa HOM05D003748 ORTHO05D004108 3.7e-09 67.0 69 49.3
FAN14G4728 Fragaria x ananassa HOM05D003748 ORTHO05D004108 3.7e-09 67.0 69 49.3
Manes.18G101100 Manihot esculenta HOM05D003748 ORTHO05D004108 3.7e-09 67.0 71 45.1
Sabra13G0095600 Salix brachista HOM05D003748 ORTHO05D004108 3.7e-09 67.0 72 44.4
AL2G31560 Arabidopsis lyrata HOM05D003748 ORTHO05D004108 4.9e-09 66.6 100 36.0
AT1G71950 Arabidopsis thaliana HOM05D003748 ORTHO05D004108 4.9e-09 66.6 103 35.9
CAN.G199.10 Capsicum annuum HOM05D003748 ORTHO05D004108 4.9e-09 66.6 106 36.8
BcaB05g24695 Brassica carinata HOM05D003748 ORTHO05D004108 6.4e-09 66.2 100 35.0
BcaC03g15314 Brassica carinata HOM05D003748 ORTHO05D004108 6.4e-09 66.2 102 37.3
C02p29240 Brassica napus HOM05D003748 ORTHO05D004108 6.4e-09 66.2 102 37.3
BolC2t08974H Brassica oleracea HOM05D003748 ORTHO05D004108 6.4e-09 66.2 102 37.3
Cpa.g.sc66.42 Carica papaya HOM05D003748 ORTHO05D004108 6.4e-09 66.2 71 45.1
Lalb_Chr01g0010201 Lupinus albus HOM05D003748 ORTHO05D004108 6.4e-09 66.2 129 35.7
Medtr1g050640 Medicago truncatula HOM05D003748 ORTHO05D004108 6.4e-09 66.2 71 45.1
Hma1.2p1_0342F.1_g130730 Hydrangea macrophylla HOM05D003748 ORTHO05D004108 8.3e-09 65.9 103 36.9
Nn5g27683 Nelumbo nucifera HOM05D003748 ORTHO05D004108 8.3e-09 65.9 71 45.1
Potri.013G112800 Populus trichocarpa HOM05D003748 ORTHO05D004108 8.3e-09 65.9 71 45.1
Aa31LG4G8670 Aethionema arabicum HOM05D003748 ORTHO05D004108 1.1e-08 65.5 98 36.7
Thhalv10019318m.g Eutrema salsugineum HOM05D003748 ORTHO05D004108 1.1e-08 65.5 125 33.6
PSO017G4343 Papaver somniferum HOM05D003748 ORTHO05D004108 1.1e-08 65.5 78 39.7
TPR.G39727 Trifolium pratense HOM05D028938 ORTHO05D009491 1.1e-08 65.5 81 43.2
Sed0020042 Sechium edule HOM05D003748 ORTHO05D004108 1.4e-08 65.1 98 34.7
Sopen06g023850 Solanum pennellii HOM05D003748 ORTHO05D004108 1.4e-08 65.1 94 35.1
THA.LOC104800113 Tarenaya hassleriana HOM05D003748 ORTHO05D004108 1.4e-08 65.1 93 38.7
CSS0008856 Camellia sinensis var. sinensis HOM05D003748 ORTHO05D004108 1.9e-08 64.7 119 34.5
PSO063G2175 Papaver somniferum HOM05D003748 ORTHO05D004108 1.9e-08 64.7 77 40.3
Peaxi162Scf00560g00736 Petunia axillaris HOM05D003748 ORTHO05D004108 1.9e-08 64.7 71 38.0
Ca_02751_v3 Cicer arietinum L. HOM05D003748 ORTHO05D004108 2.4e-08 64.3 88 44.3
Ciclev10002870m.g Citrus clementina HOM05D003748 ORTHO05D004108 2.4e-08 64.3 71 42.3
CsaV3_2G033500 Cucumis sativus L. HOM05D003748 ORTHO05D004108 2.4e-08 64.3 98 37.8
Gorai.013G140200 Gossypium raimondii HOM05D003748 ORTHO05D004108 2.4e-08 64.3 93 37.6
Lsat_1_v5_gn_6_110641 Lactuca sativa HOM05D003748 ORTHO05D004108 2.4e-08 64.3 97 36.1
Nitab4.5_0000303g0140 Nicotiana tabacum HOM05D003748 ORTHO05D004108 2.4e-08 64.3 71 40.8
GSVIVG01012792001 Vitis vinifera HOM05D003748 ORTHO05D004108 2.4e-08 64.3 71 45.1
MELO3C008123.2 Cucumis melo HOM05D003748 ORTHO05D004108 3.2e-08 63.9 120 34.2
Oeu021207.1 Olea europaea HOM05D003748 ORTHO05D004108 3.2e-08 63.9 70 42.9
Carub.0002s1873 Capsella rubella HOM05D003748 ORTHO05D004108 4.1e-08 63.5 101 33.7
DCAR_014361 Daucus carota HOM05D003748 ORTHO05D004108 4.1e-08 63.5 71 40.8
FAN09G2657 Fragaria x ananassa HOM05D003748 ORTHO05D004108 4.1e-08 63.5 64 50.0
Oeu038195.1 Olea europaea HOM05D003748 ORTHO05D004108 4.1e-08 63.5 71 38.0
Solyc06g065370.3 Solanum lycopersicum HOM05D003748 ORTHO05D004108 4.1e-08 63.5 102 34.3
Os05g0432700 Oryza sativa ssp. japonica HOM05D003748 ORTHO05D004108 5.4e-08 63.2 71 39.4
MSTRG.22452 Avicennia marina HOM05D003748 ORTHO05D004108 7.1e-08 62.8 99 33.3
Actinidia02577 Actinidia chinensis HOM05D003748 ORTHO05D004108 9.2e-08 62.4 103 35.9
Eucgr.F02610 Eucalyptus grandis HOM05D003748 ORTHO05D004108 9.2e-08 62.4 97 36.1
RcHm_v2.0_Chr2g0129441 Rosa chinensis HOM05D003748 ORTHO05D004108 9.2e-08 62.4 100 38.0
PGSC0003DMG400000891 Solanum tuberosum HOM05D003748 ORTHO05D004108 9.2e-08 62.4 58 48.3
TPR.G15310 Trifolium pratense HOM05D007643 ORTHO05D007801 9.2e-08 62.4 146 32.2
Dinv41714 Davidia involucrata HOM05D003748 ORTHO05D004108 1.2e-07 62.0 95 36.8
Potri.019G083300 Populus trichocarpa HOM05D003748 ORTHO05D004108 1.2e-07 62.0 71 40.8
HPP92_001081 Vanilla planifolia HOM05D003748 ORTHO05D004108 1.2e-07 62.0 60 48.3
BcaB03g14916 Brassica carinata HOM05D003748 ORTHO05D004108 1.6e-07 61.6 80 40.0
Cfa013847 Carpinus fangiana HOM05D003748 ORTHO05D004108 1.6e-07 61.6 71 40.8
MELO3C023644.2 Cucumis melo HOM05D003748 ORTHO05D004108 1.6e-07 61.6 99 34.3
FAN05G3939 Fragaria x ananassa HOM05D003748 ORTHO05D004108 1.6e-07 61.6 102 39.2
Gohir.A13G121200 Gossypium hirsutum HOM05D003748 ORTHO05D004108 1.6e-07 61.6 71 43.7
Sed0001630 Sechium edule HOM05D003748 ORTHO05D004108 1.6e-07 61.6 71 39.4
Aqoxy5G02591 Aquilegia oxysepala HOM05D003748 ORTHO05D004108 2.1e-07 61.2 71 42.3
A07p38120 Brassica napus HOM05D003748 ORTHO05D004108 2.1e-07 61.2 80 40.0
CANSAT64G1217 Cannabis sativa HOM05D003748 ORTHO05D004108 2.1e-07 61.2 98 38.8
Manes.02G192300 Manihot esculenta HOM05D003748 ORTHO05D004108 2.1e-07 61.2 62 46.8
CsaV3_7G024420 Cucumis sativus L. HOM05D003748 ORTHO05D004108 2.7e-07 60.8 96 32.3
Gohir.D13G125300 Gossypium hirsutum HOM05D003748 ORTHO05D004108 2.7e-07 60.8 93 36.6
FvH4_6g27290 Fragaria vesca HOM05D003748 ORTHO05D004108 3.5e-07 60.5 102 38.2
HanXRQChr05g0150261 Helianthus annuus HOM05D003748 ORTHO05D004108 3.5e-07 60.5 62 45.2
MD05G1041700 Malus domestica HOM05D003748 ORTHO05D004108 3.5e-07 60.5 103 35.0
Sed0014127 Sechium edule HOM05D003748 ORTHO05D004108 3.5e-07 60.5 80 40.0
HPP92_003143 Vanilla planifolia HOM05D003748 ORTHO05D004108 3.5e-07 60.5 96 32.3
HPP92_003146 Vanilla planifolia HOM05D003748 ORTHO05D004108 3.5e-07 60.5 96 32.3
ClCG09G010610 Citrullus lanatus HOM05D003748 ORTHO05D004108 4.6e-07 60.1 94 37.2
ClCG09G010620 Citrullus lanatus HOM05D003748 ORTHO05D004108 4.6e-07 60.1 96 33.3
MBI16_g07669_MAGBIO Magnolia biondii HOM05D003748 ORTHO05D004108 4.6e-07 60.1 89 38.2
Zm00001eb289210 Zea mays HOM05D003748 ORTHO05D004108 4.6e-07 60.1 100 31.0
ECA246G4702 Erigeron canadensis HOM05D003748 ORTHO05D004108 6.0e-07 59.7 71 39.4
FAN09G3472 Fragaria x ananassa HOM05D003748 ORTHO05D004108 6.0e-07 59.7 99 36.4
HanXRQChr05g0150061 Helianthus annuus HOM05D003748 ORTHO05D004108 6.0e-07 59.7 71 39.4
Lalb_Chr19g0129441 Lupinus albus HOM05D003748 ORTHO05D004108 6.0e-07 59.7 112 38.4
MD10G1048200 Malus domestica HOM05D003748 ORTHO05D004108 6.0e-07 59.7 100 35.0
Sopen11g009560 Solanum pennellii HOM05D003748 ORTHO05D004108 6.0e-07 59.7 70 42.9
TWI74G0020 Tripterygium wilfordii HOM05D003748 ORTHO05D004108 6.0e-07 59.7 71 38.0
vmacro12490 Vaccinium macrocarpon HOM05D003748 ORTHO05D004108 6.0e-07 59.7 55 47.3
BcaC08g46636 Brassica carinata HOM05D003748 ORTHO05D004108 7.8e-07 59.3 94 35.1
BolC6t39656H Brassica oleracea HOM05D003748 ORTHO05D004108 7.8e-07 59.3 94 35.1
Glyma.02G158200 Glycine max HOM05D003748 ORTHO05D004108 7.8e-07 59.3 74 40.5
Atru.chr13.1761_Atru.chr13.1772 Acer truncatum HOM05D003748 ORTHO05D004108 1.0e-06 58.9 71 38.0
C06p46040 Brassica napus HOM05D003748 ORTHO05D004108 1.0e-06 58.9 62 41.9
BraA07t31377Z Brassica rapa HOM05D003748 ORTHO05D004108 1.0e-06 58.9 87 36.8
MELO3C024123.2 Cucumis melo HOM05D003748 ORTHO05D004108 1.0e-06 58.9 94 36.2
Dinv03390 Davidia involucrata HOM05D003748 ORTHO05D004108 1.0e-06 58.9 56 50.0
Oeu039618.1 Olea europaea HOM05D003748 ORTHO05D004108 1.0e-06 58.9 102 31.4
SalBow6G2274 Salvia bowleyana HOM05D003748 ORTHO05D004108 1.0e-06 58.9 92 34.8
SEGI_17758 Sequoiadendron giganteum HOM05D003748 ORTHO05D004108 1.0e-06 58.9 72 40.3
ClCG09G010270 Citrullus lanatus HOM05D003748 ORTHO05D004108 1.3e-06 58.5 87 34.5
ClCG11G008120 Citrullus lanatus HOM05D003748 ORTHO05D004108 1.3e-06 58.5 77 41.6
TWI53G0775 Tripterygium wilfordii HOM05D003748 ORTHO05D004108 1.3e-06 58.5 71 38.0
Nitab4.5_0000807g0010 Nicotiana tabacum HOM05D003748 ORTHO05D004108 1.7e-06 58.2 56 44.6
ECA232G2068 Erigeron canadensis HOM05D003748 ORTHO05D004108 2.3e-06 57.8 88 35.2
MBI09_g01930_MAGBIO Magnolia biondii HOM05D003748 ORTHO05D004108 2.3e-06 57.8 92 32.6
Thecc.08G183900 Theobroma cacao HOM05D003748 ORTHO05D004108 2.3e-06 57.8 56 50.0
HPP92_025042 Vanilla planifolia HOM05D003748 ORTHO05D004108 2.3e-06 57.8 61 44.3
CsaV3_7G024410 Cucumis sativus L. HOM05D003748 ORTHO05D004108 3.0e-06 57.4 71 38.0
Lj7A290T41 Lonicera japonica HOM05D003748 ORTHO05D004108 3.0e-06 57.4 72 37.5
PGR042G3867 Punica granatum HOM05D003748 ORTHO05D004108 3.0e-06 57.4 62 43.5
Solyc11g018590.1 Solanum lycopersicum HOM05D003748 ORTHO05D004108 3.9e-06 57.0 66 42.4
BcaC08g46634 Brassica carinata HOM05D003748 ORTHO05D004108 5.1e-06 56.6 62 43.5
Sabra10G0094400 Salix brachista HOM05D003748 ORTHO05D004108 5.1e-06 56.6 71 38.0
Sabra15G0037700 Salix brachista HOM05D003748 ORTHO05D004108 5.1e-06 56.6 94 34.0
CAN.G493.1 Capsicum annuum HOM05D003748 ORTHO05D004108 6.6e-06 56.2 74 33.8
Sabra11G0052500 Salix brachista HOM05D003748 ORTHO05D004108 6.6e-06 56.2 65 40.0
MELO3C008122.2 Cucumis melo HOM05D001651 ORTHO05D004108 8.6e-06 55.8 82 40.2
Prupe.8G057500 Prunus persica HOM05D003748 ORTHO05D004108 8.6e-06 55.8 100 33.0
Sed0006671 Sechium edule HOM05D003748 ORTHO05D004108 8.6e-06 55.8 91 40.7
Sc23g0001260 Simmondsia chinensis HOM05D003748 ORTHO05D004108 8.6e-06 55.8 65 41.5
HPP92_000073 Vanilla planifolia HOM05D003748 ORTHO05D004108 8.6e-06 55.8 70 38.6


User provided reference genes

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