Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G14045 Trifolium pratense HOM05D004041 ORTHO05D004564 5.0e-23 110.2 52 100.0
Medtr1g010100 Medicago truncatula HOM05D004041 ORTHO05D004564 9.4e-22 105.9 52 96.2
TPR.G10377 Trifolium pratense HOM05D004041 ORTHO05D004564 9.4e-22 105.9 52 96.2
TPR.G20436 Trifolium pratense HOM05D004041 ORTHO05D004564 9.4e-22 105.9 52 96.2
Psat6g031640 Pisum sativum HOM05D004041 ORTHO05D004564 1.0e-20 102.4 52 92.3
Ca_12887_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 2.3e-20 101.3 52 90.4
Glyma.17G200600 Glycine max HOM05D004041 ORTHO05D004564 5.2e-20 100.1 52 90.4
PGR119G2538 Punica granatum HOM05D004041 ORTHO05D004564 6.7e-20 99.8 52 88.5
Glyma.11G174282 Glycine max HOM05D004041 ORTHO05D004564 2.6e-19 97.8 52 88.5
Lj1g0018267 Lotus japonicus HOM05D004041 ORTHO05D004564 1.3e-18 95.5 52 82.7
VMungo1383G3608 Vigna mungo HOM05D004041 ORTHO05D004564 1.3e-18 95.5 52 84.6
Glyma.14G131900 Glycine max HOM05D004041 ORTHO05D004564 1.7e-18 95.1 52 84.6
Phvul.006G038688 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 2.2e-18 94.7 52 84.6
Sabra06G0181500 Salix brachista HOM05D004041 ORTHO05D004564 3.7e-18 94.0 52 80.8
Phvul.001G088700 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 4.8e-18 93.6 52 82.7
Manes.03G046500 Manihot esculenta HOM05D004041 ORTHO05D004564 6.3e-18 93.2 52 80.8
arahy.Tifrunner.gnm1.ann1.1H4CIU Arachis hypogaea HOM05D004041 ORTHO05D004564 8.2e-18 92.8 52 82.7
Potri.006G233000 Populus trichocarpa HOM05D004041 ORTHO05D004564 8.2e-18 92.8 52 78.8
ClCG08G012810 Citrullus lanatus HOM05D004041 ORTHO05D004564 1.1e-17 92.4 52 80.8
CsaV3_2G031560 Cucumis sativus L. HOM05D004041 ORTHO05D004564 1.1e-17 92.4 52 80.8
Lalb_Chr11g0064071 Lupinus albus HOM05D004041 ORTHO05D004564 1.4e-17 92.0 52 76.9
Eucgr.H02470 Eucalyptus grandis HOM05D004041 ORTHO05D004564 3.1e-17 90.9 52 78.8
Sed0021561 Sechium edule HOM05D004041 ORTHO05D004564 9.1e-17 89.4 52 76.9
TWI15G0012 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 9.1e-17 89.4 52 80.8
RcHm_v2.0_Chr6g0312381 Rosa chinensis HOM05D004041 ORTHO05D004564 2.0e-16 88.2 53 79.2
SalBow8G3032 Salvia bowleyana HOM05D004041 ORTHO05D004564 2.0e-16 88.2 53 79.2
GSVIVG01035595001 Vitis vinifera HOM05D004041 ORTHO05D004564 3.5e-16 87.4 53 77.4
RcHm_v2.0_Chr4g0410401 Rosa chinensis HOM05D004041 ORTHO05D004564 4.5e-16 87.0 52 75.0
Cpa.g.c48129 Carica papaya HOM05D004041 ORTHO05D004564 5.9e-16 86.7 52 78.8
Cpa.g.sc117.15 Carica papaya HOM05D004041 ORTHO05D004564 5.9e-16 86.7 52 78.8
Ciclev10007432m.g Citrus clementina HOM05D004041 ORTHO05D004564 5.9e-16 86.7 52 75.0
MD08G1133100 Malus domestica HOM05D004041 ORTHO05D004564 5.9e-16 86.7 52 73.1
FvH4_2g30620 Fragaria vesca HOM05D004041 ORTHO05D004564 7.7e-16 86.3 52 75.0
FAN15G2764 Fragaria x ananassa HOM05D004041 ORTHO05D004564 7.7e-16 86.3 52 75.0
FAN20G2913 Fragaria x ananassa HOM05D004041 ORTHO05D004564 7.7e-16 86.3 52 75.0
FAN24G0669 Fragaria x ananassa HOM05D004041 ORTHO05D004564 7.7e-16 86.3 52 75.0
FAN27G0182 Fragaria x ananassa HOM05D004041 ORTHO05D004564 7.7e-16 86.3 52 75.0
Atru.chr4.1391 Acer truncatum HOM05D004041 ORTHO05D004564 1.3e-15 85.5 52 75.0
Nitab4.5_0008752g0030 Nicotiana tabacum HOM05D004041 ORTHO05D004564 1.3e-15 85.5 53 79.2
TWI60G0712 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 1.3e-15 85.5 52 76.9
Migut.E01401 Erythranthe guttata HOM05D004041 ORTHO05D004564 2.2e-15 84.7 52 73.1
Lalb_Chr23g0268921 Lupinus albus HOM05D004041 ORTHO05D004564 2.9e-15 84.3 52 75.0
Nitab4.5_0000288g0130 Nicotiana tabacum HOM05D004041 ORTHO05D004564 2.9e-15 84.3 53 77.4
Peaxi162Scf00213g01515 Petunia axillaris HOM05D004041 ORTHO05D004564 2.9e-15 84.3 55 74.5
CiPaw.07G215400 Carya illinoinensis HOM05D004041 ORTHO05D004564 3.8e-15 84.0 52 69.2
MD15G1111100 Malus domestica HOM05D004041 ORTHO05D004564 3.8e-15 84.0 52 71.2
CiPaw.07G050600 Carya illinoinensis HOM05D004041 ORTHO05D004564 5.0e-15 83.6 52 69.2
Prupe.1G463200 Prunus persica HOM05D004041 ORTHO05D004564 5.0e-15 83.6 52 71.2
Gohir.A06G171600 Gossypium hirsutum HOM05D004041 ORTHO05D004564 8.5e-15 82.8 52 71.2
Gohir.D06G179700 Gossypium hirsutum HOM05D004041 ORTHO05D004564 8.5e-15 82.8 52 71.2
Gorai.010G210300 Gossypium raimondii HOM05D004041 ORTHO05D004564 8.5e-15 82.8 52 71.2
Lj8C415T2 Lonicera japonica HOM05D004041 ORTHO05D004564 8.5e-15 82.8 53 75.5
Lj8C419G2 Lonicera japonica HOM05D004041 ORTHO05D004564 8.5e-15 82.8 53 75.5
Nn8g41252 Nelumbo nucifera HOM05D004041 ORTHO05D004564 8.5e-15 82.8 51 80.4
CAN.G195.14 Capsicum annuum HOM05D004041 ORTHO05D004564 1.5e-14 82.0 54 74.1
Nn5g27656 Nelumbo nucifera HOM05D004041 ORTHO05D004564 1.9e-14 81.6 51 78.4
Actinidia12476 Actinidia chinensis HOM05D004041 ORTHO05D004564 3.2e-14 80.9 52 71.2
CSS0017741 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 3.2e-14 80.9 54 72.2
CSS0020148 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 3.2e-14 80.9 54 72.2
Carub.0005s1594 Capsella rubella HOM05D004041 ORTHO05D004564 3.2e-14 80.9 52 73.1
Gohir.D06G179400 Gossypium hirsutum HOM05D004041 ORTHO05D004564 5.5e-14 80.1 52 71.2
QL12p024601 Quercus lobata HOM05D004041 ORTHO05D004564 5.5e-14 80.1 52 69.2
Solyc08g074440.4 Solanum lycopersicum HOM05D004041 ORTHO05D004564 9.4e-14 79.3 53 73.6
PGSC0003DMG401029567 Solanum tuberosum HOM05D004041 ORTHO05D004564 9.4e-14 79.3 53 73.6
Duzib106G1246 Durio zibethinus HOM05D004041 ORTHO05D004564 1.2e-13 79.0 52 69.2
Lsat_1_v5_gn_4_74560 Lactuca sativa HOM05D004041 ORTHO05D004564 1.2e-13 79.0 53 75.5
Thecc.10G127600 Theobroma cacao HOM05D004041 ORTHO05D004564 1.2e-13 79.0 52 69.2
vmacro00640 Vaccinium macrocarpon HOM05D004041 ORTHO05D004564 1.2e-13 79.0 52 69.2
Duzib128G1534 Durio zibethinus HOM05D004041 ORTHO05D004564 1.6e-13 78.6 52 69.2
TPR.G211 Trifolium pratense HOM05D004041 ORTHO05D004564 1.6e-13 78.6 39 94.9
Aa31LG4G18100 Aethionema arabicum HOM05D004041 ORTHO05D004564 2.1e-13 78.2 53 69.8
DCAR_004521 Daucus carota HOM05D004041 ORTHO05D004564 2.1e-13 78.2 51 68.6
Thhalv10010217m.g Eutrema salsugineum HOM05D004041 ORTHO05D004564 2.1e-13 78.2 53 71.7
HanXRQChr10g0299041 Helianthus annuus HOM05D004041 ORTHO05D004564 2.1e-13 78.2 53 73.6
PSO541G4756 Papaver somniferum HOM05D004041 ORTHO05D004564 2.1e-13 78.2 51 72.5
Cc03_g09420 Coffea canephora HOM05D004041 ORTHO05D004564 2.7e-13 77.8 54 68.5
THA.LOC109116738 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 2.7e-13 77.8 53 73.6
Thecc.10G128300 Theobroma cacao HOM05D004041 ORTHO05D004564 2.7e-13 77.8 52 65.4
Sopen08g023080 Solanum pennellii HOM05D004041 ORTHO05D004564 3.6e-13 77.4 53 71.7
AL5G29450 Arabidopsis lyrata HOM05D004041 ORTHO05D004564 4.7e-13 77.0 53 69.8
Gorai.010G210000 Gossypium raimondii HOM05D004041 ORTHO05D004564 4.7e-13 77.0 52 69.2
Oeu026036.1 Olea europaea HOM05D004041 ORTHO05D004564 6.1e-13 76.6 53 69.8
PSO210G2134 Papaver somniferum HOM05D004041 ORTHO05D004564 6.1e-13 76.6 51 70.6
Hund03240 Selenicereus undatus HOM05D004041 ORTHO05D004564 6.1e-13 76.6 53 67.9
AT3G49601 Arabidopsis thaliana HOM05D004041 ORTHO05D004564 8.0e-13 76.3 53 67.9
CARHR158630 Cardamine hirsuta HOM05D004041 ORTHO05D004564 1.0e-12 75.9 53 67.9
ATR0665G601 Amborella trichopoda HOM05D004041 ORTHO05D004564 1.4e-12 75.5 51 70.6
BcaB01g00690 Brassica carinata HOM05D004041 ORTHO05D004564 2.3e-12 74.7 53 67.9
BcaC07g39425 Brassica carinata HOM05D004041 ORTHO05D004564 2.3e-12 74.7 53 67.9
C08p24610 Brassica napus HOM05D004041 ORTHO05D004564 2.3e-12 74.7 53 67.9
BolC8t50077H Brassica oleracea HOM05D004041 ORTHO05D004564 2.3e-12 74.7 53 67.9
Sp5g12500 Schrenkiella parvula HOM05D004041 ORTHO05D004564 2.3e-12 74.7 53 67.9
SEGI_30814 Sequoiadendron giganteum HOM05D004041 ORTHO05D004564 2.3e-12 74.7 52 71.2
THA.LOC104799001 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 2.3e-12 74.7 53 69.8
Aqoxy7G02570 Aquilegia oxysepala HOM05D004041 ORTHO05D004564 3.0e-12 74.3 51 64.7
MBI11_g09070_MAGBIO Magnolia biondii HOM05D004041 ORTHO05D004564 3.0e-12 74.3 51 70.6
COL.COLO4_09287 Corchorus olitorius HOM05D004041 ORTHO05D004564 4.0e-12 73.9 52 61.5
PSO832G4585 Papaver somniferum HOM05D004041 ORTHO05D004564 4.0e-12 73.9 51 68.6
TAR383G1094 Trochodendron aralioides HOM05D004041 ORTHO05D004564 4.0e-12 73.9 51 68.6
A06p18110 Brassica napus HOM05D004041 ORTHO05D004564 6.8e-12 73.2 53 66.0
BraA06t24900Z Brassica rapa HOM05D004041 ORTHO05D004564 6.8e-12 73.2 53 66.0
Sc06g0000040 Simmondsia chinensis HOM05D004041 ORTHO05D004564 6.8e-12 73.2 53 64.2
Sc06g0001360 Simmondsia chinensis HOM05D004041 ORTHO05D004564 6.8e-12 73.2 53 64.2
EL10Ac2g03659 Beta vulgaris HOM05D004041 ORTHO05D004564 1.2e-11 72.4 53 62.3
CBR_g88579 Chara braunii HOM05D004041 ORTHO05D004564 2.0e-11 71.6 52 63.5
Thecc.10G128100 Theobroma cacao HOM05D004041 ORTHO05D004564 2.6e-11 71.2 52 59.6
CDE07G1163 Ceratophyllum demersum HOM05D004041 ORTHO05D004564 3.4e-11 70.9 46 71.7
Mapoly0057s0059 Marchantia polymorpha HOM05D004041 ORTHO05D004564 3.4e-11 70.9 52 67.3
AUR62020692 Chenopodium quinoa HOM05D004041 ORTHO05D004564 7.5e-11 69.7 53 60.4
AUR62028033 Chenopodium quinoa HOM05D004041 ORTHO05D004564 7.5e-11 69.7 53 60.4
Mapoly0057s0051 Marchantia polymorpha HOM05D004041 ORTHO05D004564 9.8e-11 69.3 52 63.5
AagrBONN_evm.TU.Sc2ySwM_344.5195 Anthoceros agrestis HOM05D004041 ORTHO05D004564 1.7e-10 68.6 52 63.5
BcaC09g49964 Brassica carinata HOM05D004041 ORTHO05D004564 1.7e-10 68.6 52 65.4
ATR0665G238 Amborella trichopoda HOM05D004041 ORTHO05D004564 2.2e-10 68.2 51 62.7
Pp3c3_10000 Physcomitrium patens HOM05D004041 ORTHO05D004564 2.2e-10 68.2 52 65.4
Ah.10g033610 Amaranthus hybridus HOM05D004041 ORTHO05D004564 2.8e-10 67.8 53 56.6
ECA234G4028 Erigeron canadensis HOM05D004041 ORTHO05D004564 2.8e-10 67.8 52 67.3
TAR626G0117 Trochodendron aralioides HOM05D002987 ORTHO05D003359 5.4e-09 63.5 43 69.8
Ca_11409_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 9.1e-09 62.8 53 66.0
Ah.11g044190 Amaranthus hybridus HOM05D004041 ORTHO05D004564 1.6e-08 62.0 53 58.5
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 2.0e-08 61.6 52 55.8
Ca_11411_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 1.3e-07 58.9 53 62.3
Zm00001eb204710 Zea mays HOM05D004041 ORTHO05D004564 1.3e-07 58.9 30 80.0
Zm00001eb204730 Zea mays HOM05D004041 ORTHO05D004564 1.3e-07 58.9 30 86.7
Zm00001eb204750 Zea mays HOM05D004041 ORTHO05D004564 1.3e-07 58.9 30 86.7
Zm00001eb204800 Zea mays HOM05D004041 ORTHO05D004564 1.3e-07 58.9 30 86.7
Zm00001eb204810 Zea mays HOM05D004041 ORTHO05D004564 1.3e-07 58.9 30 86.7
Zm00001eb204790 Zea mays HOM05D004041 ORTHO05D004564 6.5e-07 56.6 30 83.3
Zm00001eb204830 Zea mays HOM05D004041 ORTHO05D004564 6.5e-07 56.6 30 83.3
Zm00001eb344480 Zea mays HOM05D004041 ORTHO05D004564 6.5e-07 56.6 30 76.7
Zm00001eb204770 Zea mays HOM05D004041 ORTHO05D004564 8.5e-07 56.2 29 86.2
Nitab4.5_0000648g0040 Nicotiana tabacum HOM05D004041 ORTHO05D004564 1.5e-06 55.5 41 65.9
Zm00001eb204820 Zea mays HOM05D004041 ORTHO05D004564 1.9e-06 55.1 39 66.7
Manes.07G111004 Manihot esculenta HOM05D004041 ORTHO05D004564 2.5e-06 54.7 52 46.2
SalBow7G2142 Salvia bowleyana HOM05D004041 ORTHO05D004564 2.5e-06 54.7 42 57.1


User provided reference genes

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