Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G13979 Trifolium pratense HOM05D007521 ORTHO05D009387 7.5e-147 523.9 269 100.0
Psat5g070120 Pisum sativum HOM05D007521 ORTHO05D009387 3.3e-110 402.1 265 79.6
Medtr3g093540 Medicago truncatula HOM05D007521 ORTHO05D009387 2.1e-101 372.9 243 77.8
Lj1g0021108 Lotus japonicus HOM05D007521 ORTHO05D009387 3.2e-97 359.0 252 74.6
Ca_16847_v3 Cicer arietinum L. HOM05D006307 ORTHO05D008123 1.2e-96 357.1 231 79.2
Lalb_Chr11g0067611 Lupinus albus HOM05D007521 ORTHO05D009387 1.3e-82 310.5 254 65.7
Glyma.04G224700 Glycine max HOM05D007521 ORTHO05D009387 4.2e-73 278.9 241 64.7
arahy.Tifrunner.gnm1.ann1.Q2LGCQ Arachis hypogaea HOM05D007521 ORTHO05D009387 4.3e-70 268.9 248 58.9
VMungo1309G1947 Vigna mungo HOM05D006307 ORTHO05D008123 4.8e-69 265.4 241 62.2
Phvul.009G041300 Phaseolus vulgaris HOM05D007521 ORTHO05D009387 2.6e-67 259.6 233 62.2
MD07G1238600 Malus domestica HOM05D007521 ORTHO05D009387 2.2e-66 256.5 277 54.2
Cpa.g.sc65.80 Carica papaya HOM05D007521 ORTHO05D009387 1.2e-64 250.8 254 53.1
TWI09G0709 Tripterygium wilfordii HOM05D007521 ORTHO05D009387 3.6e-64 249.2 243 55.6
CiPaw.08G156100 Carya illinoinensis HOM05D007521 ORTHO05D009387 8.8e-63 244.6 259 55.6
QL08p065346 Quercus lobata HOM05D007521 ORTHO05D009387 2.6e-62 243.0 263 54.8
Thecc.10G187600 Theobroma cacao HOM05D007521 ORTHO05D009387 3.3e-62 242.7 282 52.1
Nn2g10221 Nelumbo nucifera HOM05D007521 ORTHO05D009387 4.4e-62 242.3 211 61.1
FvH4_7g26320 Fragaria vesca HOM05D007521 ORTHO05D009387 7.4e-62 241.5 278 51.8
Prupe.2G267400 Prunus persica HOM05D007521 ORTHO05D009387 7.4e-62 241.5 257 54.5
Gohir.D05G278400 Gossypium hirsutum HOM05D007521 ORTHO05D009387 3.7e-61 239.2 280 51.1
Gorai.009G291900 Gossypium raimondii HOM05D007521 ORTHO05D009387 3.7e-61 239.2 280 51.1
FAN10G3062 Fragaria x ananassa HOM05D007521 ORTHO05D009387 6.3e-61 238.4 278 51.4
Duzib114G0131 Durio zibethinus HOM05D007521 ORTHO05D009387 8.2e-61 238.0 292 52.4
Gohir.A05G276700 Gossypium hirsutum HOM05D007521 ORTHO05D009387 1.1e-60 237.7 280 50.0
GSVIVG01032870001 Vitis vinifera HOM05D007521 ORTHO05D009387 1.1e-60 237.7 207 60.4
Potri.019G065400 Populus trichocarpa HOM05D007521 ORTHO05D009387 2.4e-60 236.5 255 53.3
arahy.Tifrunner.gnm1.ann1.RI9J7M Arachis hypogaea HOM05D006307 ORTHO05D008123 1.5e-59 233.8 233 56.2
FAN06G0083 Fragaria x ananassa HOM05D007521 ORTHO05D009387 1.5e-59 233.8 287 50.2
Ciclev10033598m.g Citrus clementina HOM05D007521 ORTHO05D009387 6.5e-58 228.4 261 54.0
RcHm_v2.0_Chr1g0372781 Rosa chinensis HOM05D007521 ORTHO05D009387 8.5e-58 228.0 279 50.2
Dinv34514 Davidia involucrata HOM05D007521 ORTHO05D009387 1.9e-57 226.9 218 58.3
PSO384G1785 Papaver somniferum HOM05D007521 ORTHO05D009387 7.2e-57 224.9 209 55.5
Eucgr.G03172 Eucalyptus grandis HOM05D007521 ORTHO05D009387 2.1e-56 223.4 270 51.1
CANSAT56G2803 Cannabis sativa HOM05D007521 ORTHO05D009387 4.7e-56 222.2 249 52.6
Nitab4.5_0011372g0030 Nicotiana tabacum HOM05D007521 ORTHO05D009387 4.7e-56 222.2 206 57.8
PGSC0003DMG400011658 Solanum tuberosum HOM05D007521 ORTHO05D009387 4.7e-56 222.2 208 58.2
TAR636G2090 Trochodendron aralioides HOM05D007521 ORTHO05D009387 7.9e-56 221.5 222 56.3
vmacro09945 Vaccinium macrocarpon HOM05D006307 ORTHO05D008123 1.4e-55 220.7 228 55.3
Actinidia31757 Actinidia chinensis HOM05D007521 ORTHO05D009387 1.8e-55 220.3 214 57.0
PSO339G2910 Papaver somniferum HOM05D007521 ORTHO05D009387 2.0e-54 216.9 209 53.6
Cc02_g05020 Coffea canephora HOM05D007521 ORTHO05D009387 9.7e-54 214.5 207 55.6
PGR142G4361 Punica granatum HOM05D007521 ORTHO05D009387 1.3e-53 214.2 246 50.8
MSTRG.8869 Avicennia marina HOM05D007521 ORTHO05D009387 2.2e-53 213.4 215 55.3
Cc02_g04870 Coffea canephora HOM05D007521 ORTHO05D009387 3.7e-53 212.6 207 56.0
THA.LOC104811673 Tarenaya hassleriana HOM05D007521 ORTHO05D009387 6.3e-53 211.8 238 52.1
Atru.BG.268.p Acer truncatum HOM05D007521 ORTHO05D009387 8.2e-53 211.5 192 58.3
HanXRQChr08g0223011 Helianthus annuus HOM05D007521 ORTHO05D009387 3.1e-52 209.5 216 51.4
CiPaw.08G155800 Carya illinoinensis HOM05D007521 ORTHO05D009387 7.0e-52 208.4 260 50.4
Nitab4.5_0000375g0330 Nicotiana tabacum HOM05D007521 ORTHO05D009387 7.0e-52 208.4 218 54.1
Migut.F00560 Erythranthe guttata HOM05D007521 ORTHO05D009387 2.0e-51 206.8 210 52.9
ECA233G6052 Erigeron canadensis HOM05D007521 ORTHO05D009387 2.6e-51 206.5 213 52.1
Sabra19G0079100 Salix brachista HOM05D007521 ORTHO05D009387 2.6e-51 206.5 257 50.2
Lsat_1_v5_gn_8_11100 Lactuca sativa HOM05D007521 ORTHO05D009387 5.0e-50 202.2 194 55.7
Aqoxy4G03316 Aquilegia oxysepala HOM05D007521 ORTHO05D009387 8.5e-50 201.4 207 56.0
AL7G33920 Arabidopsis lyrata HOM05D007521 ORTHO05D009387 9.4e-49 198.0 233 49.4
Carub.0007s2116 Capsella rubella HOM05D007521 ORTHO05D009387 4.0e-47 192.6 230 47.8
Sc11g0006120 Simmondsia chinensis HOM05D007521 ORTHO05D009387 5.2e-47 192.2 225 48.4
Sp7g18440 Schrenkiella parvula HOM05D007521 ORTHO05D009387 1.5e-46 190.7 240 47.9
Aa31LG6G2400 Aethionema arabicum HOM05D007521 ORTHO05D009387 2.6e-46 189.9 250 45.6
Hma1.2p1_0264F.1_g105770 Hydrangea macrophylla HOM05D007521 ORTHO05D009387 2.6e-46 189.9 286 43.0
ATR1127G230 Amborella trichopoda HOM05D007521 ORTHO05D009387 3.3e-46 189.5 214 47.7
A01p11790 Brassica napus HOM05D007521 ORTHO05D009387 6.3e-45 185.3 220 50.0
C01p13990 Brassica napus HOM05D007521 ORTHO05D009387 1.4e-44 184.1 231 47.2
BolC1t01366H Brassica oleracea HOM05D007521 ORTHO05D009387 1.4e-44 184.1 231 47.2
BraA01t01121Z Brassica rapa HOM05D007521 ORTHO05D009387 1.4e-44 184.1 223 49.3
BcaC09g51354 Brassica carinata HOM05D007521 ORTHO05D009387 4.1e-44 182.6 223 48.9
CSS0047724 Camellia sinensis var. sinensis HOM05D007521 ORTHO05D009387 5.3e-44 182.2 166 59.6
EL10Ac2g02694 Beta vulgaris HOM05D007521 ORTHO05D009387 5.9e-43 178.7 202 50.0
BcaNung01738 Brassica carinata HOM05D007521 ORTHO05D009387 7.7e-43 178.3 244 45.5
CARHR226760 Cardamine hirsuta HOM05D007521 ORTHO05D009387 7.7e-43 178.3 235 46.4
unitig_37.g11916 Utricularia gibba HOM05D007521 ORTHO05D009387 3.2e-41 172.9 199 48.7
CDE11G1245 Ceratophyllum demersum HOM05D007521 ORTHO05D009387 6.8e-39 165.2 150 56.7
SGA_v2.0_scaffold60G20871 Striga asiatica HOM05D006307 ORTHO05D008123 4.4e-38 162.5 224 45.1
Peaxi162Scf00167g01120 Petunia axillaris HOM05D007521 ORTHO05D009387 4.8e-37 159.1 158 52.5
DCAR_018052 Daucus carota HOM05D006307 ORTHO05D009387 5.4e-36 155.6 175 51.4
Zm00001eb284340 Zea mays HOM05D007521 ORTHO05D009387 1.1e-33 147.9 179 48.0
Cfa001178 Carpinus fangiana HOM05D007521 ORTHO05D009387 4.4e-30 136.0 163 50.9
Mapoly0070s0078 Marchantia polymorpha HOM05D007521 ORTHO05D009387 2.8e-29 133.3 208 37.0
HPP92_019762 Vanilla planifolia HOM05D007521 ORTHO05D009387 3.7e-29 132.9 184 44.6
Lj8C51T1 Lonicera japonica HOM05D007521 ORTHO05D009387 2.7e-27 126.7 123 53.7
Manes.10G004400 Manihot esculenta HOM05D007521 ORTHO05D009387 7.8e-27 125.2 162 45.1
COL.COLO4_19497 Corchorus olitorius HOM05D007521 ORTHO05D009387 1.5e-25 120.9 183 44.3
Sopen05g030700 Solanum pennellii HOM05D007521 ORTHO05D009387 1.4e-23 114.4 121 52.1
Thhalv10026093m.g Eutrema salsugineum HOM05D007521 ORTHO05D009387 3.0e-23 113.2 171 43.3
Solyc05g052170.4 Solanum lycopersicum HOM05D007521 ORTHO05D009387 3.0e-23 113.2 121 51.2
Gohir.D10G155835 Gossypium hirsutum HOM05D007521 ORTHO05D009387 5.2e-23 112.5 80 72.5
Oeu001369.2 Olea europaea HOM05D007521 ORTHO05D009387 3.4e-22 109.8 125 49.6
Actinidia07775 Actinidia chinensis HOM05D007521 ORTHO05D009387 4.4e-22 109.4 156 46.2
Pp3c3_11210 Physcomitrium patens HOM05D007521 ORTHO05D009387 9.8e-22 108.2 203 33.0
AT4G19985 Arabidopsis thaliana HOM05D007521 ORTHO05D009387 1.3e-21 107.8 174 43.1
Ah.12g064700 Amaranthus hybridus HOM05D007521 ORTHO05D009387 2.2e-21 107.1 87 60.9
AagrBONN_evm.TU.Sc2ySwM_228.2023 Anthoceros agrestis HOM05D007521 ORTHO05D009387 2.7e-19 100.1 222 32.9
Gorai.011G175800 Gossypium raimondii HOM05D007521 ORTHO05D009387 2.7e-19 100.1 80 66.2
SMO356G0638 Selaginella moellendorffii HOM05D007521 ORTHO05D009387 3.0e-18 96.7 214 31.8
Gorai.007G054900 Gossypium raimondii HOM05D007521 ORTHO05D009387 6.6e-18 95.5 71 69.0
Hund13426 Selenicereus undatus HOM05D007521 ORTHO05D009387 6.6e-18 95.5 195 33.3
Gohir.D11G050600 Gossypium hirsutum HOM05D007521 ORTHO05D009387 1.5e-17 94.4 78 61.5
SEGI_30344 Sequoiadendron giganteum HOM05D007521 ORTHO05D009387 2.6e-14 83.6 181 34.3
Actinidia01020 Actinidia chinensis HOM05D007521 ORTHO05D009387 2.4e-12 77.0 88 52.3
Hma1.2p1_0264F.1_g105790 Hydrangea macrophylla HOM05D007521 ORTHO05D009387 1.2e-11 74.7 106 43.4
CBR_g4502 Chara braunii HOM05D007521 ORTHO05D009387 4.6e-11 72.8 85 45.9
Cre10.g464264 Chlamydomonas reinhardtii HOM05D007521 ORTHO05D009387 1.0e-10 71.6 96 39.6
Hma1.2p1_0264F.1_g105780 Hydrangea macrophylla HOM05D007521 ORTHO05D009387 3.9e-10 69.7 55 63.6
CDE04G1691 Ceratophyllum demersum HOM05D000172 ORTHO05D000273 8.6e-10 68.6 75 54.7
SEGI_20264 Sequoiadendron giganteum HOM05D007521 ORTHO05D009387 7.3e-09 65.5 68 51.5
Aa31LG2G13930 Aethionema arabicum HOM05D003003 ORTHO05D008343 2.6e-06 57.0 119 30.3
Dinv16947 Davidia involucrata HOM05D003003 ORTHO05D008343 2.6e-06 57.0 95 34.7
Peaxi162Scf00374g00029 Petunia axillaris HOM05D003003 ORTHO05D008343 2.6e-06 57.0 71 38.0
Atru.chr8.74 Acer truncatum HOM05D003003 ORTHO05D008343 3.4e-06 56.6 71 42.3
FvH4_6g09480 Fragaria vesca HOM05D003003 ORTHO05D008343 3.4e-06 56.6 71 40.8
Nitab4.5_0001215g0150 Nicotiana tabacum HOM05D003003 ORTHO05D008343 3.4e-06 56.6 71 39.4
Solyc10g074910.2 Solanum lycopersicum HOM05D003003 ORTHO05D008343 3.4e-06 56.6 71 38.0
Sopen10g027400 Solanum pennellii HOM05D003003 ORTHO05D008343 3.4e-06 56.6 71 38.0
VMungo1383G2339 Vigna mungo HOM05D003003 ORTHO05D008343 3.4e-06 56.6 99 33.3
CANSAT21G0154 Cannabis sativa HOM05D003003 ORTHO05D008343 4.4e-06 56.2 71 40.8
Migut.J00015 Erythranthe guttata HOM05D003003 ORTHO05D008343 4.4e-06 56.2 71 38.0
MCO10G123 Micromonas commoda HOM05D003003 ORTHO05D009387 4.4e-06 56.2 78 39.7
Potri.016G140000 Populus trichocarpa HOM05D003003 ORTHO05D008343 4.4e-06 56.2 71 40.8
THA.LOC104806235 Tarenaya hassleriana HOM05D003003 ORTHO05D008343 4.4e-06 56.2 119 31.1
CAN.G659.15 Capsicum annuum HOM05D003003 ORTHO05D008343 5.8e-06 55.8 71 38.0
CARHR031420 Cardamine hirsuta HOM05D003003 ORTHO05D008343 5.8e-06 55.8 119 31.1
Lsat_1_v5_gn_8_123140 Lactuca sativa HOM05D003003 ORTHO05D008343 5.8e-06 55.8 71 39.4
MD04G1177300 Malus domestica HOM05D003003 ORTHO05D008343 5.8e-06 55.8 71 40.8
Phvul.008G079900 Phaseolus vulgaris HOM05D003003 ORTHO05D008343 5.8e-06 55.8 71 38.0
TPR.G24287 Trifolium pratense HOM05D003003 ORTHO05D008343 5.8e-06 55.8 72 38.9
Carub.0001s3039 Capsella rubella HOM05D003003 ORTHO05D008343 7.5e-06 55.5 117 31.6
Cc06_g00240 Coffea canephora HOM05D003003 ORTHO05D008343 7.5e-06 55.5 71 38.0
Haze_21204 Corylus avellana HOM05D003003 ORTHO05D008343 7.5e-06 55.5 71 39.4
ECA248G3306 Erigeron canadensis HOM05D003003 ORTHO05D008343 7.5e-06 55.5 71 39.4
Eucgr.K01296 Eucalyptus grandis HOM05D003003 ORTHO05D008343 7.5e-06 55.5 119 30.3
FAN14G2421 Fragaria x ananassa HOM05D003003 ORTHO05D008343 7.5e-06 55.5 71 39.4
MBI15_g36681_MAGBIO Magnolia biondii HOM05D003003 ORTHO05D008343 7.5e-06 55.5 71 39.4
Nitab4.5_0007589g0030 Nicotiana tabacum HOM05D003003 ORTHO05D008343 7.5e-06 55.5 71 38.0
ClCG04G006230 Citrullus lanatus HOM05D003003 ORTHO05D008343 9.9e-06 55.1 82 36.6
Ciclev10012371m.g Citrus clementina HOM05D003003 ORTHO05D008343 9.9e-06 55.1 71 39.4
Duzib151G0009 Durio zibethinus HOM05D003003 ORTHO05D008343 9.9e-06 55.1 71 39.4
HanXRQChr01g0000501 Helianthus annuus HOM05D003003 ORTHO05D008343 9.9e-06 55.1 71 38.0
Lj2A56T95 Lonicera japonica HOM05D003003 ORTHO05D008343 9.9e-06 55.1 119 31.1
Manes.08G168900 Manihot esculenta HOM05D003003 ORTHO05D008343 9.9e-06 55.1 71 38.0
Medtr7g073990 Medicago truncatula HOM05D003003 ORTHO05D008343 9.9e-06 55.1 72 37.5
QL07p031603 Quercus lobata HOM05D003003 ORTHO05D008343 9.9e-06 55.1 79 36.7
Sabra04G0156600 Salix brachista HOM05D003003 ORTHO05D008343 9.9e-06 55.1 71 39.4
HPP92_005299 Vanilla planifolia HOM05D003003 ORTHO05D009423 9.9e-06 55.1 191 25.7


User provided reference genes

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