Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G13969 Trifolium pratense HOM05D009393 ORTHO05D012382 0.0e+00 1545.8 1223 100.0
TPR.G19069 Trifolium pratense HOM05D009393 ORTHO05D012382 2.0e-85 322.0 184 92.9
Medtr8g032930 Medicago truncatula HOM05D009393 ORTHO05D012382 1.8e-67 262.3 753 37.1
TPR.G13962 Trifolium pratense HOM05D009393 ORTHO05D012382 7.0e-67 260.4 714 40.2
Medtr8g032900 Medicago truncatula HOM05D009393 ORTHO05D012382 2.3e-65 255.4 487 40.2
TPR.G13981 Trifolium pratense HOM05D009393 ORTHO05D000900 2.6e-61 241.9 290 55.9
Medtr3g093750 Medicago truncatula HOM05D009393 ORTHO05D012382 4.9e-60 237.7 687 35.5
TPR.G36272 Trifolium pratense HOM05D009393 ORTHO05D012382 8.3e-60 236.9 162 82.1
TPR.G13960 Trifolium pratense HOM05D009393 ORTHO05D012382 1.7e-57 229.2 172 73.8
Psat5g069440 Pisum sativum HOM05D009393 ORTHO05D012382 1.8e-54 219.2 474 47.5
Psat5g069560 Pisum sativum HOM05D009393 ORTHO05D012382 1.5e-53 216.1 727 47.7
Psat5g069480 Pisum sativum HOM05D009393 ORTHO05D012382 2.2e-52 212.2 474 46.6
TPR.G33059 Trifolium pratense HOM05D009393 ORTHO05D012382 6.0e-50 204.1 132 82.6
Medtr3g093770 Medicago truncatula HOM05D009393 ORTHO05D000900 2.3e-49 202.2 716 38.7
Lj1g0022472 Lotus japonicus HOM05D000592 ORTHO05D000900 6.6e-49 200.7 288 45.5
Medtr6g082800 Medicago truncatula HOM05D000592 ORTHO05D000900 2.7e-42 178.7 500 44.4
TPR.G24810 Trifolium pratense HOM05D009393 ORTHO05D000900 1.5e-40 172.9 313 40.9
Ca_25477_v3 Cicer arietinum L. HOM05D000592 ORTHO05D000900 5.6e-40 171.0 524 40.6
Ca_29869_v3 Cicer arietinum L. HOM05D000592 ORTHO05D000900 5.6e-40 171.0 524 40.6
Phvul.009G042500 Phaseolus vulgaris HOM05D009393 ORTHO05D000900 2.8e-39 168.7 309 41.7
Psat1g034400 Pisum sativum HOM05D009393 ORTHO05D000900 6.8e-38 164.1 290 39.3
Glyma.04G223600 Glycine max HOM05D009393 ORTHO05D000900 1.9e-35 156.0 313 39.6
TPR.G13963 Trifolium pratense HOM05D009393 ORTHO05D012382 1.3e-33 149.8 147 61.2
Lalb_Chr23g0272131 Lupinus albus HOM05D000592 ORTHO05D000900 2.1e-31 142.5 301 33.6
Prupe.2G266000 Prunus persica HOM05D000592 ORTHO05D000900 8.1e-31 140.6 316 34.8
Glyma.06G141300 Glycine max HOM05D009393 ORTHO05D000900 4.0e-30 138.3 313 37.7
Psat1g194800 Pisum sativum HOM05D009393 ORTHO05D012382 1.7e-28 132.9 223 43.5
FAN01G3120 Fragaria x ananassa HOM05D000592 ORTHO05D000900 2.2e-28 132.5 326 33.7
MD00G1192700 Malus domestica HOM05D000592 ORTHO05D000900 6.4e-28 131.0 311 35.0
Psat1g194680 Pisum sativum HOM05D009393 ORTHO05D012382 5.4e-27 127.9 373 33.8
QL08p065113 Quercus lobata HOM05D000592 ORTHO05D000900 9.3e-27 127.1 308 33.4
FvH4_7g26161 Fragaria vesca HOM05D000592 ORTHO05D000900 1.2e-26 126.7 315 34.3
FAN06G2529 Fragaria x ananassa HOM05D000592 ORTHO05D000900 1.2e-26 126.7 315 34.3
FAN10G3566 Fragaria x ananassa HOM05D000592 ORTHO05D000900 2.7e-26 125.6 315 34.6
Medtr7g022780 Medicago truncatula HOM05D009393 ORTHO05D012382 4.6e-26 124.8 172 47.1
Medtr3g093720 Medicago truncatula HOM05D009393 ORTHO05D012382 5.1e-25 121.3 146 49.3
Hma1.2p1_1805F.1_g303110 Hydrangea macrophylla HOM05D000592 ORTHO05D000900 6.6e-25 120.9 322 34.2
Psat1g194720 Pisum sativum HOM05D009393 ORTHO05D012382 8.7e-25 120.6 134 56.7
MD07G1236600 Malus domestica HOM05D000592 ORTHO05D000900 1.1e-24 120.2 244 35.2
VMungo1309G1617 Vigna mungo HOM05D000592 ORTHO05D000900 1.1e-24 120.2 497 33.8
Hma1.2p1_0264F.1_g105920 Hydrangea macrophylla HOM05D000592 ORTHO05D000900 1.5e-24 119.8 322 34.2
MD01G1170000 Malus domestica HOM05D000592 ORTHO05D000900 2.5e-24 119.0 310 33.5
MD07G1236900 Malus domestica HOM05D000592 ORTHO05D000900 2.5e-24 119.0 244 34.8
Psat0s10548g0040 Pisum sativum HOM05D009393 ORTHO05D012382 1.3e-23 116.7 136 54.4
arahy.Tifrunner.gnm1.ann1.18PYAU Arachis hypogaea HOM05D000592 ORTHO05D000900 6.2e-23 114.4 528 35.4
CSS0047619 Camellia sinensis var. sinensis HOM05D000592 ORTHO05D000900 1.4e-22 113.2 307 32.2
Psat1g194760 Pisum sativum HOM05D009393 ORTHO05D012382 1.4e-22 113.2 134 53.7
Psat5g073720 Pisum sativum HOM05D009393 ORTHO05D012382 3.1e-22 112.1 136 54.4
Atru.chr12.190 Acer truncatum HOM05D000592 ORTHO05D000900 2.0e-21 109.4 321 30.8
Cpa.g.sc19.38 Carica papaya HOM05D000592 ORTHO05D000900 2.2e-20 105.9 294 32.3
Dinv21860 Davidia involucrata HOM05D000592 ORTHO05D000900 3.8e-20 105.1 485 28.9
Sopen03g025550 Solanum pennellii HOM05D000592 ORTHO05D000900 6.4e-20 104.4 288 29.9
Solyc03g095600.1 Solanum lycopersicum HOM05D000592 ORTHO05D000900 8.4e-20 104.0 288 29.5
TPR.G17592 Trifolium pratense HOM05D009393 ORTHO05D000900 8.4e-20 104.0 108 54.6
RcHm_v2.0_Chr1g0372621 Rosa chinensis HOM05D000592 ORTHO05D000900 1.1e-19 103.6 243 33.3
Hund13435 Selenicereus undatus HOM05D000592 ORTHO05D000900 1.4e-19 103.2 295 29.5
Psat5g073680 Pisum sativum HOM05D009393 ORTHO05D012382 2.4e-19 102.4 315 32.7
PGSC0003DMG400022957 Solanum tuberosum HOM05D000592 ORTHO05D000900 4.2e-19 101.7 270 31.1
TPR.G22502 Trifolium pratense HOM05D009393 ORTHO05D012382 7.1e-19 100.9 108 51.9
Actinidia13636 Actinidia chinensis HOM05D000592 ORTHO05D000900 4.6e-18 98.2 314 30.9
Ah.12g064480 Amaranthus hybridus HOM05D000592 ORTHO05D000900 3.9e-17 95.1 310 28.4
Rhsim03G0153900 Rhododendron simsii HOM05D000592 ORTHO05D000900 3.9e-17 95.1 319 30.4
Ciclev10031096m.g Citrus clementina HOM05D000592 ORTHO05D000900 5.1e-17 94.7 315 31.4
TWI53G1016 Tripterygium wilfordii HOM05D000592 ORTHO05D000900 6.7e-17 94.4 310 29.0
EL10Ac2g02670 Beta vulgaris HOM05D000592 ORTHO05D000900 8.7e-17 94.0 307 27.0
PSO170G4625 Papaver somniferum HOM05D000592 ORTHO05D000900 8.7e-17 94.0 235 30.6
Hund28036 Selenicereus undatus HOM05D000592 ORTHO05D000900 8.7e-17 94.0 292 31.2
Hund28038 Selenicereus undatus HOM05D000592 ORTHO05D000900 8.7e-17 94.0 292 31.2
Sabra19G0075300 Salix brachista HOM05D000592 ORTHO05D000900 1.9e-16 92.8 229 32.3
Hma1.2p1_0161F.1_g072140 Hydrangea macrophylla HOM05D000592 ORTHO05D000900 2.5e-16 92.4 295 27.1
CANSAT56G2503 Cannabis sativa HOM05D000592 ORTHO05D000900 9.6e-16 90.5 259 30.5
TAR633G2344 Trochodendron aralioides HOM05D000592 ORTHO05D000900 9.6e-16 90.5 327 28.4
vmacro06905 Vaccinium macrocarpon HOM05D000592 ORTHO05D000900 9.6e-16 90.5 239 31.0
MSTRG.160 Avicennia marina HOM05D000592 ORTHO05D000900 1.6e-15 89.7 282 27.3
Manes.02G210800 Manihot esculenta HOM05D000592 ORTHO05D000900 1.6e-15 89.7 310 26.5
Nitab4.5_0005979g0020 Nicotiana tabacum HOM05D000592 ORTHO05D000900 1.6e-15 89.7 281 30.2
Lalb_Chr11g0067681 Lupinus albus HOM05D000592 ORTHO05D000900 2.1e-15 89.4 275 28.4
MD00G1193100 Malus domestica HOM05D000592 ORTHO05D000900 2.1e-15 89.4 161 38.5
PSO017G4207 Papaver somniferum HOM05D000592 ORTHO05D000900 2.1e-15 89.4 275 29.1
ClCG11G005550 Citrullus lanatus HOM05D000592 ORTHO05D000900 1.4e-14 86.7 243 28.4
Migut.F01230 Erythranthe guttata HOM05D000592 ORTHO05D000900 2.4e-14 85.9 293 28.0
CAN.G1229.1 Capsicum annuum HOM05D000592 ORTHO05D000900 3.1e-14 85.5 276 26.8
Cc02_g05180 Coffea canephora HOM05D000592 ORTHO05D000900 4.0e-14 85.1 307 28.0
Nn5g26826 Nelumbo nucifera HOM05D000592 ORTHO05D000900 4.0e-14 85.1 171 33.9
MD07G1236000 Malus domestica HOM05D000592 ORTHO05D000900 1.5e-13 83.2 153 37.3
Manes.18G139900 Manihot esculenta HOM05D000592 ORTHO05D000900 1.5e-13 83.2 290 27.9
CARHR208080 Cardamine hirsuta HOM05D000592 ORTHO05D000900 2.6e-13 82.4 305 27.5
ECA238G3344 Erigeron canadensis HOM05D016672 ORTHO05D000900 2.6e-13 82.4 288 27.1
Gohir.A05G107500 Gossypium hirsutum HOM05D000592 ORTHO05D000900 2.6e-13 82.4 200 31.5
Sp6g37650 Schrenkiella parvula HOM05D000592 ORTHO05D000900 3.4e-13 82.0 219 33.3
Thecc.10G185300 Theobroma cacao HOM05D000592 ORTHO05D000900 3.4e-13 82.0 217 33.2
Gorai.013G009500 Gossypium raimondii HOM05D000592 ORTHO05D000900 5.8e-13 81.3 230 32.6
Peaxi162Scf00073g02222 Petunia axillaris HOM05D000592 ORTHO05D000900 5.8e-13 81.3 198 33.3
Sc10g0003080 Simmondsia chinensis HOM05D000592 ORTHO05D000900 7.6e-13 80.9 329 28.9
SGA_v2.0_scaffold160G37742 Striga asiatica HOM05D000592 ORTHO05D000900 7.6e-13 80.9 304 27.0
Gohir.D05G107700 Gossypium hirsutum HOM05D000592 ORTHO05D000900 1.0e-12 80.5 200 31.5
CsaV3_5G039300 Cucumis sativus L. HOM05D000592 ORTHO05D000900 1.7e-12 79.7 237 28.7
Potri.019G061600 Populus trichocarpa HOM05D000592 ORTHO05D000900 1.7e-12 79.7 235 29.4
CiPaw.13G062900 Carya illinoinensis HOM05D000592 ORTHO05D000900 2.2e-12 79.3 147 40.1
Nitab4.5_0000171g0300 Nicotiana tabacum HOM05D000592 ORTHO05D000900 2.9e-12 79.0 274 28.5
Gorai.009G111800 Gossypium raimondii HOM05D000592 ORTHO05D000900 3.8e-12 78.6 200 31.0
Lj6g0013783 Lotus japonicus HOM05D000592 ORTHO05D000900 3.8e-12 78.6 240 26.2
Zm00001eb281940 Zea mays HOM05D000592 ORTHO05D000900 3.8e-12 78.6 201 31.8
CDE12G0881 Ceratophyllum demersum HOM05D000592 ORTHO05D000900 4.9e-12 78.2 260 27.7
Lsat_1_v5_gn_2_126640 Lactuca sativa HOM05D016672 ORTHO05D000900 6.5e-12 77.8 136 36.0
Zm00001eb345890 Zea mays HOM05D000592 ORTHO05D000900 8.4e-12 77.4 200 32.5
COL.COLO4_19478 Corchorus olitorius HOM05D000592 ORTHO05D000900 1.1e-11 77.0 384 27.3
Oeu064684.1 Olea europaea HOM05D000592 ORTHO05D000900 1.1e-11 77.0 214 30.4
Ah.08g215540 Amaranthus hybridus HOM05D000592 ORTHO05D000900 1.9e-11 76.3 298 25.5
Dinv12285 Davidia involucrata HOM05D000592 ORTHO05D000900 3.2e-11 75.5 204 29.9
MELO3C022108.2 Cucumis melo HOM05D000592 ORTHO05D000900 4.2e-11 75.1 293 27.3
CSS0036597 Camellia sinensis var. sinensis HOM05D000592 ORTHO05D000900 5.5e-11 74.7 238 29.0
Cpa.g.sc2.288 Carica papaya HOM05D000592 ORTHO05D000900 5.5e-11 74.7 313 25.6
Duzib114G0734 Durio zibethinus HOM05D000592 ORTHO05D000900 7.1e-11 74.3 269 28.6
Gohir.A13G008100 Gossypium hirsutum HOM05D000592 ORTHO05D000900 1.2e-10 73.6 218 32.6
AUR62009736 Chenopodium quinoa HOM05D000592 ORTHO05D000900 1.6e-10 73.2 266 27.4
Cc00_g18900 Coffea canephora HOM05D000592 ORTHO05D000900 3.5e-10 72.0 203 29.6
Ciclev10000625m.g Citrus clementina HOM05D000592 ORTHO05D000900 4.6e-10 71.6 183 31.7
PSO017G2726 Papaver somniferum HOM05D000592 ORTHO05D000900 4.6e-10 71.6 135 33.3
Aqoxy4G03282 Aquilegia oxysepala HOM05D000592 ORTHO05D000900 6.0e-10 71.2 295 25.1
EL10Ac7g15848 Beta vulgaris HOM05D000592 ORTHO05D000900 6.0e-10 71.2 286 26.2
Hma1.2p1_3788F.1_g337620 Hydrangea macrophylla HOM05D000592 ORTHO05D000900 7.9e-10 70.9 201 29.9
Manes.07G141800 Manihot esculenta HOM05D000592 ORTHO05D000900 7.9e-10 70.9 388 24.0
Oeu027193.1 Olea europaea HOM05D000592 ORTHO05D000900 1.0e-09 70.5 281 24.9
BolC3t12808H Brassica oleracea HOM05D000592 ORTHO05D000900 1.3e-09 70.1 304 26.0
PSO732G0509 Papaver somniferum HOM05D031600 ORTHO05D000900 2.3e-09 69.3 267 26.2
Glyma.02G236600 Glycine max HOM05D000592 ORTHO05D000900 3.0e-09 68.9 174 29.9
PGR142G0092 Punica granatum HOM05D000592 ORTHO05D000900 3.0e-09 68.9 169 33.1
Ah.15g095920 Amaranthus hybridus HOM05D000592 ORTHO05D000900 3.9e-09 68.6 280 25.7
DCAR_020156 Daucus carota HOM05D000592 ORTHO05D000900 3.9e-09 68.6 332 22.6
Thhalv10021043m.g Eutrema salsugineum HOM05D012263 ORTHO05D000900 3.9e-09 68.6 114 35.1
Manes.10G003500 Manihot esculenta HOM05D000592 ORTHO05D000900 3.9e-09 68.6 450 28.7
Actinidia11628 Actinidia chinensis HOM05D000592 ORTHO05D000900 6.7e-09 67.8 139 35.3
AUR62036208 Chenopodium quinoa HOM05D000592 ORTHO05D000900 6.7e-09 67.8 298 25.5
HanXRQChr07g0204871 Helianthus annuus HOM05D016672 ORTHO05D000900 6.7e-09 67.8 308 25.0
RcHm_v2.0_Chr5g0073401 Rosa chinensis HOM05D000592 ORTHO05D000900 8.7e-09 67.4 144 34.7
SalBow2G3219 Salvia bowleyana HOM05D000592 ORTHO05D000900 8.7e-09 67.4 274 25.2
GSVIVG01032654001 Vitis vinifera HOM05D000592 ORTHO05D000900 8.7e-09 67.4 233 30.0
Carub.0003s1013 Capsella rubella HOM05D012263 ORTHO05D000900 1.1e-08 67.0 294 27.2
Potri.019G131000 Populus trichocarpa HOM05D000592 ORTHO05D000900 1.1e-08 67.0 316 25.0
TAR623G1305 Trochodendron aralioides HOM05D000592 ORTHO05D000900 1.1e-08 67.0 207 30.0
BraA03t09586Z Brassica rapa HOM05D000592 ORTHO05D000900 1.5e-08 66.6 144 33.3
Os05g0168800 Oryza sativa ssp. japonica HOM05D000592 ORTHO05D000900 1.5e-08 66.6 141 31.9
CARHR085470 Cardamine hirsuta HOM05D012263 ORTHO05D000900 1.9e-08 66.2 119 34.5
PSO302G0198 Papaver somniferum HOM05D031600 ORTHO05D000900 1.9e-08 66.2 278 24.1
CDE07G1883 Ceratophyllum demersum HOM05D000592 ORTHO05D000900 4.3e-08 65.1 286 25.2
Gohir.D13G008700 Gossypium hirsutum HOM05D000592 ORTHO05D000900 4.3e-08 65.1 223 29.6
Oeu011387.1 Olea europaea HOM05D000592 ORTHO05D000900 4.3e-08 65.1 208 27.9
Solyc08g077680.3 Solanum lycopersicum HOM05D000592 ORTHO05D000900 4.3e-08 65.1 314 24.2
PSO302G0277 Papaver somniferum HOM05D031600 ORTHO05D000900 5.7e-08 64.7 306 22.5
SGA_v2.0_scaffold20G09285 Striga asiatica HOM05D000592 ORTHO05D000900 5.7e-08 64.7 178 28.1
Rhsim13G0058700 Rhododendron simsii HOM05D000592 ORTHO05D000900 7.4e-08 64.3 302 26.5
vmacro02870 Vaccinium macrocarpon HOM05D000592 ORTHO05D000900 7.4e-08 64.3 194 30.4
Lj1P969T46 Lonicera japonica HOM05D000592 ORTHO05D000900 1.6e-07 63.2 150 33.3
Gorai.003G146700 Gossypium raimondii HOM05D000592 ORTHO05D000900 2.8e-07 62.4 194 29.9
MELO3C020482.2 Cucumis melo HOM05D000592 ORTHO05D000900 3.7e-07 62.0 183 27.3
Gohir.A03G028700 Gossypium hirsutum HOM05D000592 ORTHO05D000900 3.7e-07 62.0 181 30.4
Os01g0168100 Oryza sativa ssp. japonica HOM05D000592 ORTHO05D000900 3.7e-07 62.0 119 31.1
PGSC0003DMG400001834 Solanum tuberosum HOM05D000592 ORTHO05D000900 4.8e-07 61.6 123 30.9
Sp3g09210 Schrenkiella parvula HOM05D012263 ORTHO05D000900 6.3e-07 61.2 195 29.7
unitig_26.g10224 Utricularia gibba HOM05D000592 ORTHO05D000900 6.3e-07 61.2 221 27.1
Dinv28735 Davidia involucrata HOM05D000592 ORTHO05D000900 8.2e-07 60.8 263 26.2
THA.LOC104816506 Tarenaya hassleriana HOM05D000592 ORTHO05D000900 1.1e-06 60.5 412 21.8
A05p38350 Brassica napus HOM05D012263 ORTHO05D000900 1.4e-06 60.1 111 34.2
BraA05t22625Z Brassica rapa HOM05D012263 ORTHO05D000900 1.4e-06 60.1 111 34.2
Gohir.D03G139900 Gossypium hirsutum HOM05D000592 ORTHO05D000900 1.4e-06 60.1 194 29.4
HPP92_024983 Vanilla planifolia HOM05D000592 ORTHO05D000900 1.4e-06 60.1 275 24.4
Ca_27035_v3 Cicer arietinum L. HOM05D000592 ORTHO05D000900 1.8e-06 59.7 296 21.3
Oeu015578.1 Olea europaea HOM05D000592 ORTHO05D000900 2.4e-06 59.3 214 27.1
AL6G15020 Arabidopsis lyrata HOM05D000592 ORTHO05D000900 3.1e-06 58.9 242 26.9
BcaC05g29405 Brassica carinata HOM05D012263 ORTHO05D000900 3.1e-06 58.9 196 29.6
A03p02220 Brassica napus HOM05D000592 ORTHO05D000900 3.1e-06 58.9 198 29.3
C05p57200 Brassica napus HOM05D012263 ORTHO05D000900 3.1e-06 58.9 196 29.6
BolC5t34381H Brassica oleracea HOM05D012263 ORTHO05D000900 3.1e-06 58.9 196 29.6
Migut.D00814 Erythranthe guttata HOM05D000592 ORTHO05D000900 3.1e-06 58.9 152 28.3
Eucgr.B04033 Eucalyptus grandis HOM05D000592 ORTHO05D000900 3.1e-06 58.9 126 30.2
Potri.013G158100 Populus trichocarpa HOM05D000592 ORTHO05D000900 3.1e-06 58.9 162 30.2
Sopen08g026190 Solanum pennellii HOM05D000592 ORTHO05D000900 3.1e-06 58.9 314 23.6
unitig_85.g27164 Utricularia gibba HOM05D000516 ORTHO05D000409 3.1e-06 58.9 241 25.7
AT3G10880 Arabidopsis thaliana HOM05D012263 ORTHO05D000900 5.3e-06 58.2 95 35.8
Thhalv10013570m.g Eutrema salsugineum HOM05D000592 ORTHO05D000900 5.3e-06 58.2 224 26.3
TWI79G0473 Tripterygium wilfordii HOM05D000592 ORTHO05D000900 6.9e-06 57.8 86 39.5
SGA_v2.0_scaffold120G32994 Striga asiatica HOM05D000592 ORTHO05D000900 9.0e-06 57.4 82 36.6


User provided reference genes

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