Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G13934 Trifolium pratense HOM05D005409 ORTHO05D006456 0.0e+00 1184.5 616 100.0
Psat0s935g0040 Pisum sativum HOM05D005409 ORTHO05D006456 4.1e-281 971.1 626 82.4
Medtr4g092050 Medicago truncatula HOM05D005409 ORTHO05D006456 5.5e-278 960.7 624 85.4
Ca_18454_v3 Cicer arietinum L. HOM05D005409 ORTHO05D006456 6.9e-273 943.7 631 81.9
Lj4g0002185 Lotus japonicus HOM05D005409 ORTHO05D006456 8.3e-226 787.3 645 70.4
Glyma.07G187300 Glycine max HOM05D005409 ORTHO05D006456 1.7e-223 779.6 643 69.8
Glyma.08G061800 Glycine max HOM05D005409 ORTHO05D006456 1.2e-219 766.9 644 68.8
VMungo0251G1750 Vigna mungo HOM05D005409 ORTHO05D006456 2.1e-216 756.1 649 67.8
Phvul.002G218900 Phaseolus vulgaris HOM05D005409 ORTHO05D006456 7.8e-216 754.2 643 68.7
Lalb_Chr09g0327161 Lupinus albus HOM05D005409 ORTHO05D006456 2.7e-208 729.2 636 66.8
Lalb_Chr16g0383301 Lupinus albus HOM05D005409 ORTHO05D006456 4.0e-196 688.7 637 63.6
Prupe.4G030000 Prunus persica HOM05D005409 ORTHO05D006456 3.1e-164 582.8 640 55.6
Cfa016400 Carpinus fangiana HOM05D005409 ORTHO05D006456 8.5e-162 574.7 642 55.5
CiPaw.10G113200 Carya illinoinensis HOM05D005409 ORTHO05D006456 1.2e-152 544.3 645 54.0
MD05G1335400 Malus domestica HOM05D005409 ORTHO05D006456 2.8e-149 533.1 640 53.9
MD10G1310800 Malus domestica HOM05D005409 ORTHO05D006456 4.1e-148 529.3 643 52.7
Thecc.06G207400 Theobroma cacao HOM05D005409 ORTHO05D006456 4.1e-148 529.3 649 53.0
Duzib192G0995 Durio zibethinus HOM05D005409 ORTHO05D006456 6.5e-146 521.9 646 52.2
CiPaw.10G113100 Carya illinoinensis HOM05D005409 ORTHO05D006456 4.2e-145 519.2 644 51.9
Manes.17G030300 Manihot esculenta HOM05D005409 ORTHO05D006456 9.4e-145 518.1 643 51.5
QL05p077347 Quercus lobata HOM05D005409 ORTHO05D006456 6.1e-144 515.4 691 49.2
Duzib235G0390 Durio zibethinus HOM05D005409 ORTHO05D006456 1.4e-143 514.2 654 50.9
FAN25G1204 Fragaria x ananassa HOM05D005409 ORTHO05D006456 8.8e-143 511.5 680 49.1
CsaV3_1G011380 Cucumis sativus L. HOM05D005409 ORTHO05D006456 1.2e-142 511.1 639 51.3
Ciclev10014614m.g Citrus clementina HOM05D005409 ORTHO05D006456 2.8e-141 506.5 641 51.5
ClCG03G005190 Citrullus lanatus HOM05D005409 ORTHO05D006456 3.7e-141 506.1 641 51.5
Gohir.D09G070300 Gossypium hirsutum HOM05D005409 ORTHO05D006456 7.7e-139 498.4 649 50.8
Dinv18952 Davidia involucrata HOM05D005409 ORTHO05D006456 1.0e-138 498.0 672 49.7
Gohir.D10G017400 Gossypium hirsutum HOM05D005409 ORTHO05D006456 2.2e-138 496.9 638 50.5
Gorai.011G019300 Gossypium raimondii HOM05D005409 ORTHO05D006456 2.2e-138 496.9 638 50.5
CANSAT35G0463 Cannabis sativa HOM05D005409 ORTHO05D006456 8.5e-138 495.0 647 50.9
Gorai.006G084700 Gossypium raimondii HOM05D005409 ORTHO05D006456 8.5e-138 495.0 656 50.5
Gohir.A09G070200 Gossypium hirsutum HOM05D005409 ORTHO05D006456 3.6e-136 489.6 650 50.6
Gohir.A10G017200 Gossypium hirsutum HOM05D005409 ORTHO05D006456 3.6e-136 489.6 640 50.2
TAR624G1144 Trochodendron aralioides HOM05D005409 ORTHO05D006456 3.6e-136 489.6 652 49.8
Nn1g06923 Nelumbo nucifera HOM05D005409 ORTHO05D006456 8.0e-136 488.4 649 49.8
MELO3C002515.2 Cucumis melo HOM05D005409 ORTHO05D006456 8.8e-135 485.0 638 50.2
COL.COLO4_33645 Corchorus olitorius HOM05D005409 ORTHO05D006456 2.8e-133 479.9 648 51.2
TWI63G1109 Tripterygium wilfordii HOM05D005409 ORTHO05D006456 1.6e-131 474.2 657 47.0
Sed0006411 Sechium edule HOM05D005409 ORTHO05D006456 2.8e-128 463.4 633 49.0
Actinidia11830 Actinidia chinensis HOM05D005409 ORTHO05D006456 2.4e-124 450.3 664 45.9
TAR626G0140 Trochodendron aralioides HOM05D005409 ORTHO05D006456 2.0e-123 447.2 650 47.8
Solyc02g079880.3 Solanum lycopersicum HOM05D005409 ORTHO05D006456 3.3e-121 439.9 673 45.6
PGSC0003DMG400021722 Solanum tuberosum HOM05D005409 ORTHO05D006456 1.8e-119 434.1 673 44.7
Peaxi162Scf00759g00211 Petunia axillaris HOM05D005409 ORTHO05D006456 1.5e-118 431.0 660 45.6
Sopen02g024640 Solanum pennellii HOM05D005409 ORTHO05D006456 5.7e-118 429.1 675 45.2
Nitab4.5_0000503g0080 Nicotiana tabacum HOM05D005409 ORTHO05D006456 4.9e-117 426.0 667 45.6
Hma1.2p1_0809F.1_g221770 Hydrangea macrophylla HOM05D005409 ORTHO05D006456 1.4e-116 424.5 657 46.1
Cc02_g11840 Coffea canephora HOM05D005409 ORTHO05D006456 3.2e-116 423.3 664 44.3
arahy.Tifrunner.gnm1.ann1.XK38U2 Arachis hypogaea HOM05D005409 ORTHO05D006456 4.1e-116 422.9 642 47.4
Nitab4.5_0006456g0010 Nicotiana tabacum HOM05D005409 ORTHO05D006456 1.6e-115 421.0 672 44.3
Hund23539 Selenicereus undatus HOM05D005409 ORTHO05D006456 6.6e-114 415.6 650 45.7
Lj2A276T57 Lonicera japonica HOM05D005409 ORTHO05D006456 9.5e-113 411.8 649 44.5
Potri.011G031900 Populus trichocarpa HOM05D005409 ORTHO05D006456 1.2e-112 411.4 630 44.6
arahy.Tifrunner.gnm1.ann1.QZ9QK3 Arachis hypogaea HOM05D005409 ORTHO05D006456 3.1e-111 406.8 682 44.7
Rhsim02G0115600 Rhododendron simsii HOM05D005409 ORTHO05D006456 6.8e-111 405.6 701 41.8
Sc17g0006920 Simmondsia chinensis HOM05D005409 ORTHO05D006456 7.0e-108 395.6 642 46.4
ECA236G3644 Erigeron canadensis HOM05D005409 ORTHO05D006456 2.0e-107 394.0 648 44.9
MSTRG.15953 Avicennia marina HOM05D005409 ORTHO05D006456 3.5e-107 393.3 655 42.6
Aqoxy1G03830 Aquilegia oxysepala HOM05D005409 ORTHO05D006456 5.0e-106 389.4 693 42.9
vmacro15844 Vaccinium macrocarpon HOM05D005409 ORTHO05D006456 1.1e-105 388.3 671 42.5
Eucgr.E03596 Eucalyptus grandis HOM05D005409 ORTHO05D006456 1.5e-105 387.9 551 49.0
PGR042G2399 Punica granatum HOM05D005409 ORTHO05D006456 2.5e-105 387.1 646 44.3
GSVIVG01006401001 Vitis vinifera HOM05D005409 ORTHO05D006456 1.6e-104 384.4 663 43.6
Ah.14g088510 Amaranthus hybridus HOM05D005409 ORTHO05D006456 2.3e-103 380.6 661 44.6
EL10As6g23684 Beta vulgaris HOM05D005409 ORTHO05D006456 5.2e-103 379.4 667 43.9
TWI38G0167 Tripterygium wilfordii HOM05D005409 ORTHO05D006456 2.9e-101 373.6 608 44.4
DCAR_008109 Daucus carota HOM05D005409 ORTHO05D006456 3.7e-101 373.2 640 42.3
HanXRQChr15g0482781 Helianthus annuus HOM05D005409 ORTHO05D006456 6.4e-101 372.5 649 44.7
Lj1A1221T57 Lonicera japonica HOM05D005409 ORTHO05D006456 1.4e-100 371.3 637 44.3
Sabra11G0025100 Salix brachista HOM05D005409 ORTHO05D006456 2.4e-100 370.5 630 43.5
PSO541G2946 Papaver somniferum HOM05D005409 ORTHO05D006456 3.2e-100 370.2 661 44.3
THA.LOC104809524 Tarenaya hassleriana HOM05D005409 ORTHO05D006456 1.2e-99 368.2 632 41.9
Haze_06671 Corylus avellana HOM05D005409 ORTHO05D006456 6.0e-99 365.9 438 52.1
HanXRQChr15g0482771 Helianthus annuus HOM05D005409 ORTHO05D006456 1.0e-98 365.2 651 44.1
PSO675G2591 Papaver somniferum HOM05D005409 ORTHO05D006456 1.3e-98 364.8 661 43.9
AUR62012574 Chenopodium quinoa HOM05D005409 ORTHO05D006456 3.9e-98 363.2 664 42.5
FvH4_3g03030 Fragaria vesca HOM05D005409 ORTHO05D006456 2.1e-96 357.5 504 47.0
Oeu016146.1 Olea europaea HOM05D005409 ORTHO05D006456 4.7e-96 356.3 662 42.9
AUR62014626 Chenopodium quinoa HOM05D005409 ORTHO05D006456 1.2e-94 351.7 664 41.9
MBI02_g26225_MAGBIO Magnolia biondii HOM05D005409 ORTHO05D006456 4.4e-94 349.7 654 42.7
DCAR_004174 Daucus carota HOM05D005409 ORTHO05D006456 1.4e-92 344.7 610 42.1
Hma1.2p1_0809F.1_g221760 Hydrangea macrophylla HOM05D005409 ORTHO05D006456 4.1e-92 343.2 538 45.5
Actinidia24044 Actinidia chinensis HOM05D005409 ORTHO05D006456 4.6e-91 339.7 513 45.0
Migut.M01258 Erythranthe guttata HOM05D005409 ORTHO05D006456 4.6e-91 339.7 642 41.4
Sabra11G0019200 Salix brachista HOM05D005409 ORTHO05D006456 1.0e-90 338.6 631 41.0
CSS0017238 Camellia sinensis var. sinensis HOM05D005409 ORTHO05D006456 1.9e-89 334.3 632 41.5
Lsat_1_v5_gn_7_18380 Lactuca sativa HOM05D005409 ORTHO05D006456 2.1e-88 330.9 640 42.7
Actinidia26760 Actinidia chinensis HOM05D005409 ORTHO05D006456 1.1e-87 328.6 554 42.1
Potri.007G119200 Populus trichocarpa HOM05D005409 ORTHO05D006456 2.4e-87 327.4 661 40.8
RcHm_v2.0_Chr5g0004681 Rosa chinensis HOM05D005409 ORTHO05D006456 3.8e-85 320.1 487 45.6
Sp1g10100 Schrenkiella parvula HOM05D005409 ORTHO05D006456 3.2e-84 317.0 641 41.5
Aa31LG1G3270 Aethionema arabicum HOM05D005409 ORTHO05D006456 6.6e-82 309.3 651 40.1
THA.LOC104818924 Tarenaya hassleriana HOM05D005409 ORTHO05D006456 3.3e-81 307.0 602 39.9
A06p08100 Brassica napus HOM05D005409 ORTHO05D006456 1.3e-80 305.1 645 40.0
AT1G11480 Arabidopsis thaliana HOM05D005409 ORTHO05D006456 1.6e-80 304.7 635 40.6
AL1G22590 Arabidopsis lyrata HOM05D005409 ORTHO05D006456 8.1e-80 302.4 638 41.1
Sabra17G0028000 Salix brachista HOM05D005409 ORTHO05D006456 2.6e-78 297.4 708 36.7
Cpa.g.sc81.2 Carica papaya HOM05D005409 ORTHO05D006456 3.4e-78 297.0 442 46.8
BcaC05g25024 Brassica carinata HOM05D005409 ORTHO05D006456 7.6e-78 295.8 645 40.0
Carub.0001s1109 Capsella rubella HOM05D005409 ORTHO05D006456 1.7e-77 294.7 628 40.3
Oeu050809.4 Olea europaea HOM05D005409 ORTHO05D006456 1.7e-77 294.7 663 37.3
CARHR011750 Cardamine hirsuta HOM05D005409 ORTHO05D006456 2.9e-77 293.9 639 39.0
C05p09680 Brassica napus HOM05D005409 ORTHO05D006456 2.4e-76 290.8 645 39.7
BraA06t24009Z Brassica rapa HOM05D005409 ORTHO05D006456 2.1e-75 287.7 642 39.1
GSVIVG01030650001 Vitis vinifera HOM05D005409 ORTHO05D006456 1.1e-73 282.0 639 37.4
SGA_v2.0_scaffold7G03896 Striga asiatica HOM05D005409 ORTHO05D006456 1.9e-73 281.2 683 35.7
Potri.017G041300 Populus trichocarpa HOM05D005409 ORTHO05D006456 4.3e-73 280.0 639 37.6
Thhalv10007161m.g Eutrema salsugineum HOM05D005409 ORTHO05D006456 5.6e-73 279.6 638 38.7
BolC5t29709H Brassica oleracea HOM05D005409 ORTHO05D006456 1.3e-72 278.5 629 39.1
Atru.chr10.2048 Acer truncatum HOM05D005409 ORTHO05D006456 1.4e-71 275.0 365 49.3
CDE12G0800 Ceratophyllum demersum HOM05D005409 ORTHO05D006456 2.9e-69 267.3 511 41.9
HPP92_000870 Vanilla planifolia HOM05D005409 ORTHO05D006456 3.2e-68 263.8 653 38.3
Sabra07G0096100 Salix brachista HOM05D005409 ORTHO05D006456 3.5e-67 260.4 772 33.5
CDE01G0308 Ceratophyllum demersum HOM05D005409 ORTHO05D006456 3.9e-66 256.9 638 36.1
SalBow8G4343 Salvia bowleyana HOM05D005409 ORTHO05D006456 5.1e-66 256.5 459 41.0
Actinidia26959 Actinidia chinensis HOM05D005409 ORTHO05D006456 1.5e-65 255.0 481 41.6
BcaNung07116 Brassica carinata HOM05D005409 ORTHO05D006456 5.7e-57 226.5 430 41.6
Oeu050499.1 Olea europaea HOM05D005409 ORTHO05D006456 8.2e-56 222.6 430 39.5
ATR0804G077 Amborella trichopoda HOM05D005409 ORTHO05D006456 4.7e-43 180.3 730 33.3
Atru.chr6.3116 Acer truncatum HOM05D005409 ORTHO05D006456 1.0e-42 179.1 457 35.0
Ah.09g237100 Amaranthus hybridus HOM05D000067 ORTHO05D006456 6.7e-42 176.4 619 31.3
Cpa.g.sc81.1 Carica papaya HOM05D005409 ORTHO05D006456 5.7e-41 173.3 194 54.6
Os07g0546100 Oryza sativa ssp. japonica HOM05D005409 ORTHO05D006456 4.8e-40 170.2 656 32.0
RcHm_v2.0_Chr5g0004671 Rosa chinensis HOM05D005409 ORTHO05D006456 6.5e-37 159.8 122 69.7
GSVIVG01006635001 Vitis vinifera HOM05D005409 ORTHO05D006456 2.5e-36 157.9 165 60.0
Zm00001eb323520 Zea mays HOM05D005409 ORTHO05D006456 3.2e-36 157.5 646 30.8
Atru.chr10.2047 Acer truncatum HOM05D005409 ORTHO05D006456 4.1e-31 140.6 246 43.5
Haze_06667 Corylus avellana HOM05D005409 ORTHO05D006456 8.8e-26 122.9 184 42.4
SMO118G0050 Selaginella moellendorffii HOM05D005409 ORTHO05D006456 2.7e-19 101.3 734 26.2
Pp3c20_3440 Physcomitrium patens HOM05D005409 ORTHO05D006456 1.6e-14 85.5 362 30.4
Zm00001eb106500 Zea mays HOM05D005409 ORTHO05D006456 5.9e-14 83.6 416 29.3
Atru.chr6.3115 Acer truncatum HOM05D005409 ORTHO05D006456 7.7e-14 83.2 196 37.2
Mapoly0113s0049 Marchantia polymorpha HOM05D005409 ORTHO05D006456 1.0e-13 82.8 104 50.0
Actinidia26960 Actinidia chinensis HOM05D005409 ORTHO05D006456 1.9e-12 78.6 92 54.3
QL05p012359 Quercus lobata HOM05D005409 ORTHO05D006456 5.5e-12 77.0 116 45.7
AagrBONN_evm.TU.Sc2ySwM_228.455 Anthoceros agrestis HOM05D005409 ORTHO05D006456 9.5e-12 76.3 116 44.0
SEGI_29006 Sequoiadendron giganteum HOM05D005409 ORTHO05D006456 4.4e-09 67.4 259 31.7
CBR_g36658 Chara braunii HOM05D005409 ORTHO05D006456 7.0e-07 60.1 112 40.2


User provided reference genes

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