Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G13921 Trifolium pratense HOM05D005126 ORTHO05D006169 0.0e+00 2169.8 1204 100.0
Medtr4g092040 Medicago truncatula HOM05D005126 ORTHO05D006169 0.0e+00 1757.7 1212 82.1
Psat7g105840 Pisum sativum HOM05D005126 ORTHO05D006169 0.0e+00 1665.2 1227 78.4
Ca_18455_v3 Cicer arietinum L. HOM05D005126 ORTHO05D006169 0.0e+00 1662.5 1247 77.4
Lj4g0001880 Lotus japonicus HOM05D005126 ORTHO05D006169 0.0e+00 1470.3 1253 69.4
Glyma.07G187500 Glycine max HOM05D005126 ORTHO05D006169 0.0e+00 1397.5 1243 67.3
Glyma.08G061700 Glycine max HOM05D005126 ORTHO05D006169 0.0e+00 1383.2 1238 67.0
VMungo0251G0970 Vigna mungo HOM05D005126 ORTHO05D006169 0.0e+00 1362.1 1277 64.8
Phvul.002G219000 Phaseolus vulgaris HOM05D005126 ORTHO05D006169 0.0e+00 1358.6 1254 65.6
Lalb_Chr09g0327171 Lupinus albus HOM05D005126 ORTHO05D006169 0.0e+00 1275.8 1252 63.7
arahy.Tifrunner.gnm1.ann1.JX13SW Arachis hypogaea HOM05D005126 ORTHO05D006169 0.0e+00 1228.0 1246 61.6
arahy.Tifrunner.gnm1.ann1.7M140W Arachis hypogaea HOM05D005126 ORTHO05D006169 0.0e+00 1178.7 1206 61.4
QL05p077365 Quercus lobata HOM05D005126 ORTHO05D006169 3.6e-273 945.7 1291 50.4
Dinv17855 Davidia involucrata HOM05D005126 ORTHO05D006169 6.7e-272 941.4 1296 50.5
CiPaw.09G152800 Carya illinoinensis HOM05D005126 ORTHO05D006169 2.2e-270 936.4 1306 49.7
Cfa000280 Carpinus fangiana HOM05D005126 ORTHO05D006169 1.2e-268 930.6 1294 49.5
Haze_06662 Corylus avellana HOM05D005126 ORTHO05D006169 6.1e-265 918.3 1344 48.7
Ciclev10007263m.g Citrus clementina HOM05D005126 ORTHO05D006169 2.3e-259 899.8 1263 49.2
CANSAT35G0768 Cannabis sativa HOM05D005126 ORTHO05D006169 1.4e-256 890.6 1254 49.4
Prupe.4G030200 Prunus persica HOM05D005126 ORTHO05D006169 4.0e-256 889.0 1264 49.7
FvH4_3g03041 Fragaria vesca HOM05D005126 ORTHO05D006169 7.5e-247 858.2 1218 49.3
Duzib160G0882 Durio zibethinus HOM05D005126 ORTHO05D006169 4.9e-246 855.5 1287 47.9
FAN21G2838 Fragaria x ananassa HOM05D005126 ORTHO05D006169 3.2e-245 852.8 1218 49.1
RcHm_v2.0_Chr5g0004701 Rosa chinensis HOM05D005126 ORTHO05D006169 7.8e-244 848.2 1230 49.3
Potri.011G032200 Populus trichocarpa HOM05D005126 ORTHO05D006169 5.6e-242 842.0 1313 47.3
COL.COLO4_33008 Corchorus olitorius HOM05D005126 ORTHO05D006169 1.2e-241 840.9 1254 47.7
Potri.004G030500 Populus trichocarpa HOM05D005126 ORTHO05D006169 2.8e-241 839.7 1324 45.8
MD10G1310700 Malus domestica HOM05D005126 ORTHO05D006169 3.6e-241 839.3 1252 48.2
Duzib192G0985 Durio zibethinus HOM05D005126 ORTHO05D006169 1.3e-238 830.9 1249 47.5
TAR624G1039 Trochodendron aralioides HOM05D005126 ORTHO05D006169 1.4e-237 827.4 1314 46.0
Sabra11G0025300 Salix brachista HOM05D005126 ORTHO05D006169 2.4e-237 826.6 1315 46.4
TWI63G0986 Tripterygium wilfordii HOM05D005126 ORTHO05D006169 2.7e-236 823.2 1318 46.6
Gohir.A10G017400 Gossypium hirsutum HOM05D005126 ORTHO05D006169 8.9e-232 808.1 1244 46.6
Gohir.D06G212500 Gossypium hirsutum HOM05D005126 ORTHO05D006169 2.4e-229 800.0 1234 46.8
Gorai.010G253600 Gossypium raimondii HOM05D005126 ORTHO05D006169 3.5e-228 796.2 1234 47.2
THA.LOC104809525 Tarenaya hassleriana HOM05D005126 ORTHO05D006169 7.3e-226 788.5 1224 46.4
Manes.15G164500 Manihot esculenta HOM05D005126 ORTHO05D006169 7.8e-220 768.5 1258 44.7
Thhalv10023224m.g Eutrema salsugineum HOM05D005126 ORTHO05D006169 7.3e-218 761.9 1246 45.8
Sabra11G0019400 Salix brachista HOM05D005126 ORTHO05D006169 8.1e-217 758.4 1265 45.8
Gohir.A06G208600 Gossypium hirsutum HOM05D005126 ORTHO05D006169 2.4e-216 756.9 1238 45.6
Nn1g03751 Nelumbo nucifera HOM05D005126 ORTHO05D006169 1.5e-215 754.2 1308 44.3
CsaV3_6G049470 Cucumis sativus L. HOM05D005126 ORTHO05D006169 1.2e-212 744.6 1280 43.8
Sp2g02860 Schrenkiella parvula HOM05D005126 ORTHO05D006169 1.6e-212 744.2 1245 44.7
MELO3C007347.2 Cucumis melo HOM05D005126 ORTHO05D006169 4.6e-212 742.7 1271 44.8
Carub.0002s0337 Capsella rubella HOM05D005126 ORTHO05D006169 3.0e-211 740.0 1236 44.6
Sed0023382 Sechium edule HOM05D005126 ORTHO05D006169 2.8e-209 733.4 1285 44.9
CSS0033857 Camellia sinensis var. sinensis HOM05D005126 ORTHO05D006169 8.1e-209 731.9 1228 45.4
CARHR050640 Cardamine hirsuta HOM05D005126 ORTHO05D006169 1.1e-208 731.5 1227 44.5
AL2G14430 Arabidopsis lyrata HOM05D005126 ORTHO05D006169 4.0e-208 729.6 1241 43.7
MD05G1335200 Malus domestica HOM05D005126 ORTHO05D006169 2.0e-207 727.2 1052 47.9
Aa31LG2G9130 Aethionema arabicum HOM05D005126 ORTHO05D006169 3.4e-207 726.5 1220 44.7
ClCG01G022310 Citrullus lanatus HOM05D005126 ORTHO05D006169 1.1e-200 704.9 1280 43.6
BcaB04g20363 Brassica carinata HOM05D005126 ORTHO05D006169 3.1e-200 703.4 1224 43.9
CAN.G424.91 Capsicum annuum HOM05D005126 ORTHO05D006169 3.1e-200 703.4 1271 43.4
C01p38950 Brassica napus HOM05D005126 ORTHO05D006169 3.8e-198 696.4 1244 43.0
BolC1t03845H Brassica oleracea HOM05D005126 ORTHO05D006169 6.5e-198 695.7 1244 43.0
Thecc.06G207200 Theobroma cacao HOM05D005126 ORTHO05D006169 6.5e-198 695.7 997 49.1
BraA01t03188Z Brassica rapa HOM05D005126 ORTHO05D006169 9.3e-197 691.8 1237 42.8
A01p30560 Brassica napus HOM05D005126 ORTHO05D006169 1.6e-196 691.0 1236 42.9
AT1G61690 Arabidopsis thaliana HOM05D005126 ORTHO05D006169 1.0e-195 688.3 1241 43.1
Actinidia05547 Actinidia chinensis HOM05D005126 ORTHO05D006169 8.2e-193 678.7 1229 43.0
MBI07_g11719_MAGBIO Magnolia biondii HOM05D005126 ORTHO05D006169 3.1e-192 676.8 1253 42.1
Nitab4.5_0006456g0050 Nicotiana tabacum HOM05D005126 ORTHO05D006169 1.0e-190 671.8 1276 41.8
Lj2C276T6 Lonicera japonica HOM05D005126 ORTHO05D006169 8.4e-190 668.7 1223 42.8
PGSC0003DMG400021720 Solanum tuberosum HOM05D005126 ORTHO05D006169 9.3e-189 665.2 1267 42.5
vmacro03741 Vaccinium macrocarpon HOM05D005126 ORTHO05D006169 5.7e-186 656.0 1225 42.1
Eucgr.H00119 Eucalyptus grandis HOM05D005126 ORTHO05D006169 7.4e-186 655.6 1218 41.7
PSO210G4646 Papaver somniferum HOM05D005126 ORTHO05D006169 1.3e-185 654.8 1233 41.7
Sopen02g024620 Solanum pennellii HOM05D005126 ORTHO05D006169 2.2e-185 654.1 1269 41.8
PSO832G1831 Papaver somniferum HOM05D005126 ORTHO05D006169 1.5e-183 647.9 1238 41.0
Hma1.2p1_0809F.1_g221780 Hydrangea macrophylla HOM05D005126 ORTHO05D006169 1.9e-181 641.0 1120 44.3
Aqoxy4G01910 Aquilegia oxysepala HOM05D005126 ORTHO05D006169 5.7e-178 629.4 1241 41.4
Peaxi162Scf00931g00055 Petunia axillaris HOM05D005126 ORTHO05D006169 1.8e-176 624.4 1214 41.8
Nitab4.5_0000503g0050 Nicotiana tabacum HOM05D005126 ORTHO05D006169 9.1e-176 622.1 1218 40.5
GSVIVG01006404001 Vitis vinifera HOM05D005126 ORTHO05D006169 4.5e-175 619.8 1030 44.1
MSTRG.4220 Avicennia marina HOM05D005126 ORTHO05D006169 8.5e-174 615.5 1231 40.9
DCAR_004173 Daucus carota HOM05D005126 ORTHO05D006169 1.9e-173 614.4 1217 41.2
Cc02_g11860 Coffea canephora HOM05D005126 ORTHO05D006169 6.3e-169 599.4 1219 39.8
AUR62006818 Chenopodium quinoa HOM05D005126 ORTHO05D006169 1.8e-168 597.8 1229 39.4
Hund23540 Selenicereus undatus HOM05D005126 ORTHO05D006169 1.2e-167 595.1 1239 39.1
Rhsim13G0163000 Rhododendron simsii HOM05D005126 ORTHO05D006169 5.0e-166 589.7 1197 39.8
PGR031G2928 Punica granatum HOM05D005126 ORTHO05D006169 4.7e-164 583.2 1236 39.7
Sc05g0008390 Simmondsia chinensis HOM05D005126 ORTHO05D006169 5.7e-162 576.2 1229 38.4
Oeu015946.3 Olea europaea HOM05D005126 ORTHO05D006169 2.0e-159 567.8 1226 39.0
Gorai.011G019500 Gossypium raimondii HOM05D005126 ORTHO05D006169 3.8e-158 563.5 1168 39.0
ECA236G2220 Erigeron canadensis HOM05D005126 ORTHO05D006169 1.6e-156 558.1 1229 38.3
Gohir.D10G017600 Gossypium hirsutum HOM05D005126 ORTHO05D006169 1.6e-156 558.1 1168 39.0
CSS0041207 Camellia sinensis var. sinensis HOM05D005126 ORTHO05D006169 4.0e-155 553.5 1176 40.3
Migut.N00381 Erythranthe guttata HOM05D005126 ORTHO05D006169 5.2e-155 553.1 1221 38.5
EL10Ac4g09560 Beta vulgaris HOM05D005126 ORTHO05D006169 5.7e-154 549.7 1230 37.5
FAN25G1045 Fragaria x ananassa HOM05D005126 ORTHO05D006169 5.7e-154 549.7 835 47.1
AUR62000477 Chenopodium quinoa HOM05D005126 ORTHO05D006169 7.5e-154 549.3 1228 37.2
Ah.06g190720 Amaranthus hybridus HOM05D005126 ORTHO05D006169 6.3e-153 546.2 1236 39.2
ATR0804G089 Amborella trichopoda HOM05D005126 ORTHO05D006169 4.1e-152 543.5 1283 36.7
CDE01G0539 Ceratophyllum demersum HOM05D005126 ORTHO05D006169 1.6e-148 531.6 1440 34.7
Oeu045309.1 Olea europaea HOM05D005126 ORTHO05D006169 3.7e-145 520.4 682 49.9
SalBow4G2671 Salvia bowleyana HOM05D005126 ORTHO05D006169 8.3e-145 519.2 1181 37.3
SEGI_24274 Sequoiadendron giganteum HOM05D005126 ORTHO05D006169 6.1e-140 503.1 1416 34.5
Lsat_1_v5_gn_7_18540 Lactuca sativa HOM05D005126 ORTHO05D006169 5.2e-139 500.0 1213 36.7
Actinidia26962 Actinidia chinensis HOM05D005126 ORTHO05D006169 2.6e-138 497.7 992 41.2
HanXRQChr05g0130831 Helianthus annuus HOM05D005126 ORTHO05D006169 4.3e-133 480.3 1228 36.4
Zm00001eb245580 Zea mays HOM05D005126 ORTHO05D006169 2.3e-126 458.0 1205 35.4
Os03g0669800 Oryza sativa ssp. japonica HOM05D005126 ORTHO05D006169 6.6e-126 456.4 696 44.8
SGA_v2.0_scaffold216G42402 Striga asiatica HOM05D005126 ORTHO05D006169 8.3e-121 439.5 1226 33.4
TAR626G0500 Trochodendron aralioides HOM05D005126 ORTHO05D006169 4.1e-120 437.2 556 51.8
unitig_736.g22481 Utricularia gibba HOM05D005126 ORTHO05D006169 5.2e-115 420.2 1138 34.2
Cpa.g.c45157 Carica papaya HOM05D005126 ORTHO05D006169 2.0e-98 365.2 451 53.0
AagrBONN_evm.TU.Sc2ySwM_368.2701 Anthoceros agrestis HOM05D005126 ORTHO05D006169 9.3e-96 356.3 1387 30.9
CDE12G0914 Ceratophyllum demersum HOM05D005126 ORTHO05D006169 7.4e-93 346.7 661 42.1
Pp3c16_8350 Physcomitrium patens HOM05D005126 ORTHO05D006169 1.6e-92 345.5 1421 27.9
Cpa.g.sc871.1 Carica papaya HOM05D005126 ORTHO05D006169 2.7e-79 301.6 502 43.6
CSS0026607 Camellia sinensis var. sinensis HOM05D005126 ORTHO05D006169 2.5e-77 295.0 589 40.1
SMO141G0003 Selaginella moellendorffii HOM05D005126 ORTHO05D006169 2.1e-76 292.0 1229 30.1
Atru.chr10.2052 Acer truncatum HOM05D005126 ORTHO05D006169 2.9e-73 281.6 484 43.4
Prupe.4G011500 Prunus persica HOM05D005126 ORTHO05D006169 9.3e-72 276.6 664 38.4
arahy.Tifrunner.gnm1.ann1.TF7ZQX Arachis hypogaea HOM05D005126 ORTHO05D006169 1.8e-70 272.3 261 63.2
HPP92_016843 Vanilla planifolia HOM05D005126 ORTHO05D006169 2.9e-65 255.0 421 44.4
Mapoly0032s0118 Marchantia polymorpha HOM05D005126 ORTHO05D006169 1.3e-60 239.6 1454 26.4
Oeu030881.1 Olea europaea HOM05D005126 ORTHO05D006169 1.4e-51 209.5 303 52.8
BcaB04g20360 Brassica carinata HOM05D005126 ORTHO05D006169 5.3e-51 207.6 483 37.9
GSVIVG01002717001 Vitis vinifera HOM05D005126 ORTHO05D006169 2.0e-50 205.7 265 53.2
FAN25G0472 Fragaria x ananassa HOM05D005126 ORTHO05D006169 4.8e-44 184.5 209 56.5
BcaB04g20358 Brassica carinata HOM05D005126 ORTHO05D006169 1.9e-40 172.6 460 36.1
TAR626G1585 Trochodendron aralioides HOM05D005126 ORTHO05D006169 9.8e-37 160.2 466 34.8
GSVIVG01006464001 Vitis vinifera HOM05D005126 ORTHO05D006169 4.8e-36 157.9 544 31.8
TAR626G0260 Trochodendron aralioides HOM05D005126 ORTHO05D006169 2.0e-34 152.5 157 61.8
CDE12G0347 Ceratophyllum demersum HOM05D005126 ORTHO05D006169 3.8e-33 148.3 760 26.8
Atru.chr10.2054 Acer truncatum HOM05D005126 ORTHO05D006169 1.0e-30 140.2 129 65.9
Atru.chr10.2050 Acer truncatum HOM05D005126 ORTHO05D006169 1.2e-29 136.7 132 59.8
CBR_g52260 Chara braunii HOM05D005126 ORTHO05D006169 3.4e-29 135.2 1033 24.7
Psat2g029640 Pisum sativum HOM05D005126 ORTHO05D006169 4.1e-27 128.3 88 78.4
SHI02133 Sapria himalayana HOM05D005126 ORTHO05D006169 8.0e-23 114.0 333 34.2
Psat2g029560 Pisum sativum HOM05D000058 ORTHO05D000077 1.0e-17 97.1 63 77.8
MELO3C007345.2 Cucumis melo HOM05D005126 ORTHO05D006169 4.3e-16 91.7 458 28.4
FvH4_3g03071 Fragaria vesca HOM05D005126 ORTHO05D006169 6.2e-15 87.8 199 38.7
Psat7g158760 Pisum sativum HOM05D000555 ORTHO05D001906 3.4e-13 82.0 57 75.4
Atru.chr10.2051 Acer truncatum HOM05D005126 ORTHO05D006169 3.7e-12 78.6 77 57.1
Nitab4.5_0000503g0120 Nicotiana tabacum HOM05D005126 ORTHO05D006169 1.7e-09 69.7 35 88.6
Oeu022112.1 Olea europaea HOM05D005126 ORTHO05D006169 3.0e-09 68.9 45 73.3
Atru.chr10.2053 Acer truncatum HOM05D005126 ORTHO05D006169 1.1e-08 67.0 48 75.0
Prupe.4G012200 Prunus persica HOM05D005126 ORTHO05D006169 1.6e-07 63.2 44 70.5
FAN25G1652 Fragaria x ananassa HOM05D005126 ORTHO05D006169 2.8e-07 62.4 63 61.9


User provided reference genes

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