Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1392 Trifolium pratense HOM05D004021 ORTHO05D003767 0.0e+00 2312.7 1172 100.0
Medtr3g110132 Medicago truncatula HOM05D004021 ORTHO05D003767 0.0e+00 1836.2 1188 81.2
Medtr3g110082 Medicago truncatula HOM05D004021 ORTHO05D003767 0.0e+00 1791.9 1188 79.9
Psat5g022840 Pisum sativum HOM05D004021 ORTHO05D003767 0.0e+00 1781.1 1185 77.6
Psat5g022920 Pisum sativum HOM05D004021 ORTHO05D003767 0.0e+00 1768.1 1195 76.8
Ca_15608_v3 Cicer arietinum L. HOM05D004021 ORTHO05D003767 0.0e+00 1580.8 1188 72.1
Glyma.06G083500 Glycine max HOM05D004021 ORTHO05D003767 0.0e+00 1426.0 1193 65.3
Lj1g0012897 Lotus japonicus HOM05D004021 ORTHO05D003767 0.0e+00 1403.3 1198 63.8
Glyma.04G081800 Glycine max HOM05D004021 ORTHO05D003767 0.0e+00 1379.4 1192 63.9
VMungo1309G0329 Vigna mungo HOM05D004021 ORTHO05D003767 0.0e+00 1354.0 1194 61.2
Phvul.009G107600 Phaseolus vulgaris HOM05D004021 ORTHO05D003767 0.0e+00 1337.4 1194 61.0
Lalb_Chr11g0064441 Lupinus albus HOM05D004021 ORTHO05D003767 0.0e+00 1215.3 1185 57.0
Lalb_Chr01g0011141 Lupinus albus HOM05D004021 ORTHO05D003767 0.0e+00 1189.9 1195 57.0
Lalb_Chr08g0243171 Lupinus albus HOM05D004021 ORTHO05D003767 0.0e+00 1176.8 1196 55.8
arahy.Tifrunner.gnm1.ann1.QM1LQ0 Arachis hypogaea HOM05D004021 ORTHO05D003767 0.0e+00 1171.8 1199 55.5
Lalb_Chr11g0064431 Lupinus albus HOM05D004021 ORTHO05D003767 7.7e-297 1024.2 1188 50.8
QL12p029472 Quercus lobata HOM05D004021 ORTHO05D003767 6.8e-168 595.9 1289 36.3
Cfa013353 Carpinus fangiana HOM05D004021 ORTHO05D003767 4.0e-160 570.1 1272 35.4
Haze_21872 Corylus avellana HOM05D004021 ORTHO05D003767 1.0e-155 555.4 1326 34.6
CiPaw.07G205800 Carya illinoinensis HOM05D004021 ORTHO05D003767 2.1e-153 547.7 1294 35.3
arahy.Tifrunner.gnm1.ann1.E545QA Arachis hypogaea HOM05D004021 ORTHO05D003767 4.4e-151 540.0 1185 36.8
Lalb_Chr24g0396931 Lupinus albus HOM05D004021 ORTHO05D003767 5.0e-139 500.0 1213 35.0
CiPaw.08G024400 Carya illinoinensis HOM05D004021 ORTHO05D003767 2.8e-129 467.6 1302 32.7
Potri.006G240500 Populus trichocarpa HOM05D004021 ORTHO05D003767 1.9e-125 454.9 1268 33.0
Prupe.1G450900 Prunus persica HOM05D004021 ORTHO05D003767 1.7e-123 448.4 1278 31.5
Lalb_Chr14g0372341 Lupinus albus HOM05D004021 ORTHO05D003767 3.0e-123 447.6 1182 33.5
Sabra06G0188100 Salix brachista HOM05D004021 ORTHO05D003767 3.9e-123 447.2 1273 32.1
RcHm_v2.0_Chr6g0305941 Rosa chinensis HOM05D004021 ORTHO05D003767 2.1e-121 441.4 1324 31.3
CANSAT25G3821 Cannabis sativa HOM05D004021 ORTHO05D003767 4.4e-119 433.7 1353 29.2
Potri.018G039500 Populus trichocarpa HOM05D004021 ORTHO05D003767 4.2e-117 427.2 1298 31.5
FvH4_2g35880 Fragaria vesca HOM05D004021 ORTHO05D003767 1.2e-116 425.6 1308 30.9
Thecc.09G042000 Theobroma cacao HOM05D004021 ORTHO05D003767 2.7e-116 424.5 1289 31.3
FAN27G1714 Fragaria x ananassa HOM05D004021 ORTHO05D003767 6.0e-116 423.3 1308 30.8
FAN20G2231 Fragaria x ananassa HOM05D004021 ORTHO05D003767 2.3e-115 421.4 1309 31.2
FAN15G2992 Fragaria x ananassa HOM05D004021 ORTHO05D003767 5.1e-115 420.2 1313 30.8
Duzib187G0651 Durio zibethinus HOM05D004021 ORTHO05D003767 8.1e-113 412.9 1293 30.6
Sabra18G0039500 Salix brachista HOM05D004021 ORTHO05D003767 1.8e-112 411.8 1302 31.0
Manes.16G071666 Manihot esculenta HOM05D004021 ORTHO05D003767 7.6e-111 406.4 1301 30.3
Ciclev10007267m.g Citrus clementina HOM05D004021 ORTHO05D003767 9.9e-111 406.0 1286 30.9
Duzib150G1483 Durio zibethinus HOM05D004021 ORTHO05D003767 1.0e-107 396.0 1267 29.4
COL.COLO4_18677 Corchorus olitorius HOM05D004021 ORTHO05D003767 2.7e-100 371.3 1255 30.0
Gohir.A07G023000 Gossypium hirsutum HOM05D004021 ORTHO05D003767 2.4e-96 358.2 1296 28.2
Dinv14242 Davidia involucrata HOM05D004021 ORTHO05D003767 9.0e-96 356.3 1305 29.5
Dinv30267 Davidia involucrata HOM05D004021 ORTHO05D003767 1.5e-95 355.5 1330 28.0
MD08G1116300 Malus domestica HOM05D004021 ORTHO05D003767 7.6e-95 353.2 1243 29.0
Gorai.001G027600 Gossypium raimondii HOM05D004021 ORTHO05D003767 1.9e-93 348.6 1261 28.5
Duzib168G2343 Durio zibethinus HOM05D004021 ORTHO05D003767 1.8e-91 342.0 1223 29.2
Gohir.A07G023100 Gossypium hirsutum HOM05D004021 ORTHO05D003767 3.0e-91 341.3 1290 27.8
Gohir.D07G026700 Gossypium hirsutum HOM05D004021 ORTHO05D003767 5.7e-90 337.0 1252 28.2
Gorai.001G027700 Gossypium raimondii HOM05D004021 ORTHO05D003767 2.4e-88 331.6 1252 27.9
Lalb_Chr22g0352261 Lupinus albus HOM05D004021 ORTHO05D003767 5.9e-87 327.0 635 39.2
MD15G1096000 Malus domestica HOM05D004021 ORTHO05D003767 4.3e-82 310.8 1068 30.6
CsaV3_3G048630 Cucumis sativus L. HOM05D004021 ORTHO05D003767 1.4e-80 305.8 1232 28.6
TWI63G0612 Tripterygium wilfordii HOM05D004021 ORTHO05D003767 2.4e-80 305.1 1217 27.4
Gohir.D07G026600 Gossypium hirsutum HOM05D004021 ORTHO05D003767 1.2e-79 302.8 1232 27.0
MELO3C003457.2 Cucumis melo HOM05D004021 ORTHO05D003767 4.5e-79 300.8 1260 27.4
Sed0007846 Sechium edule HOM05D004021 ORTHO05D003767 1.2e-76 292.7 1246 28.3
ClCG11G015210 Citrullus lanatus HOM05D004021 ORTHO05D003767 2.3e-75 288.5 1250 27.0
ClCG08G012320 Citrullus lanatus HOM05D004021 ORTHO05D003767 1.8e-72 278.9 1225 28.4
Actinidia14666 Actinidia chinensis HOM05D004021 ORTHO05D003767 9.1e-72 276.6 1297 26.8
TAR383G0364 Trochodendron aralioides HOM05D004021 ORTHO05D003767 5.9e-71 273.9 1415 26.0
CsaV3_2G030990 Cucumis sativus L. HOM05D004021 ORTHO05D003767 7.4e-66 256.9 1243 28.2
CSS0009602 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 1.4e-64 252.7 1275 26.4
MELO3C011152.2 Cucumis melo HOM05D004021 ORTHO05D003767 2.6e-63 248.4 1240 27.1
THA.LOC104799199 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 2.9e-62 245.0 1248 27.3
THA.LOC104814779 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 3.6e-60 238.0 1248 25.5
Sed0002796 Sechium edule HOM05D004021 ORTHO05D003767 8.0e-60 236.9 1232 27.4
Actinidia15734 Actinidia chinensis HOM05D004021 ORTHO05D003767 1.4e-59 236.1 1201 26.1
Nn3g18104 Nelumbo nucifera HOM05D004021 ORTHO05D003767 4.4e-58 231.1 1246 25.4
Rhsim07G0152700 Rhododendron simsii HOM05D004021 ORTHO05D003767 5.7e-58 230.7 1219 26.7
Sp6g32070 Schrenkiella parvula HOM05D004021 ORTHO05D003767 8.2e-57 226.9 1223 28.1
Carub.0006s1000 Capsella rubella HOM05D004021 ORTHO05D003767 7.0e-56 223.8 1236 25.9
Aa31LG3G15670 Aethionema arabicum HOM05D004021 ORTHO05D003767 1.6e-55 222.6 1229 26.3
Atru.chr7.2140 Acer truncatum HOM05D004021 ORTHO05D003767 5.0e-54 217.6 799 29.4
GSVIVG01035651001 Vitis vinifera HOM05D004021 ORTHO05D003767 2.5e-53 215.3 1023 27.0
AL6G22200 Arabidopsis lyrata HOM05D004021 ORTHO05D003767 1.0e-51 209.9 1252 25.3
AT5G11530 Arabidopsis thaliana HOM05D004021 ORTHO05D003767 3.0e-51 208.4 1237 25.5
Thhalv10003568m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 1.2e-47 196.4 1227 25.9
Eucgr.C02901 Eucalyptus grandis HOM05D004021 ORTHO05D003767 2.5e-45 188.7 1247 25.5
BolC3t13094H Brassica oleracea HOM05D004021 ORTHO05D003767 1.2e-42 179.9 1182 26.4
Lj8A589G31 Lonicera japonica HOM05D004021 ORTHO05D003767 2.0e-42 179.1 1302 24.3
BraA03t09842Z Brassica rapa HOM05D004021 ORTHO05D003767 7.5e-42 177.2 1193 25.6
CARHR201690 Cardamine hirsuta HOM05D004021 ORTHO05D003767 7.5e-42 177.2 1221 24.4
TAR626G0792 Trochodendron aralioides HOM05D004021 ORTHO05D003767 2.8e-41 175.3 565 30.8
Nn2g11674 Nelumbo nucifera HOM05D004021 ORTHO05D003767 1.4e-40 172.9 1338 23.4
Lalb_Chr22g0352251 Lupinus albus HOM05D004021 ORTHO05D003767 9.2e-40 170.2 500 30.6
BcaNung01931 Brassica carinata HOM05D004021 ORTHO05D003767 1.6e-39 169.5 1183 25.6
PGR044G0442 Punica granatum HOM05D004021 ORTHO05D003767 1.9e-37 162.5 1281 24.2
BolC2t06463H Brassica oleracea HOM05D004021 ORTHO05D003767 6.1e-36 157.5 1185 25.1
BcaB01g05477 Brassica carinata HOM05D004021 ORTHO05D003767 1.4e-35 156.4 1178 25.2
Cpa.g.sc7.256 Carica papaya HOM05D004021 ORTHO05D003767 1.4e-35 156.4 380 31.3
BraA02t05084Z Brassica rapa HOM05D004021 ORTHO05D003767 2.3e-35 155.6 1182 24.9
A02p01040 Brassica napus HOM05D004021 ORTHO05D003767 4.0e-35 154.8 1182 25.1
PGSC0003DMG401018585 Solanum tuberosum HOM05D004021 ORTHO05D003767 6.8e-35 154.1 1284 24.2
CAN.G309.87 Capsicum annuum HOM05D004021 ORTHO05D003767 1.5e-34 152.9 1256 24.6
BcaC03g13370 Brassica carinata HOM05D004021 ORTHO05D003767 3.4e-34 151.8 1198 25.0
C02p05090 Brassica napus HOM05D004021 ORTHO05D003767 3.4e-34 151.8 1198 25.0
vmacro05366 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 3.4e-34 151.8 506 30.8
A06p36400 Brassica napus HOM05D004021 ORTHO05D003767 6.4e-33 147.5 1194 24.7
BcaNung03924 Brassica carinata HOM05D004021 ORTHO05D003767 1.1e-32 146.7 1176 24.1
BolC7t44742H Brassica oleracea HOM05D004021 ORTHO05D003767 1.4e-32 146.4 1176 24.1
C07p42110 Brassica napus HOM05D004021 ORTHO05D003767 2.4e-32 145.6 1176 24.0
Aa31LG11G4580 Aethionema arabicum HOM05D004021 ORTHO05D003767 2.7e-31 142.1 1207 23.5
Solyc11g071250.3 Solanum lycopersicum HOM05D004021 ORTHO05D003767 7.8e-31 140.6 1291 24.3
FAN09G3084 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.0e-30 140.2 469 29.2
Nitab4.5_0001567g0120 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.0e-30 140.2 1270 23.5
FAN02G4319 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.3e-30 139.8 469 29.2
Nitab4.5_0001567g0150 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.7e-30 139.4 1267 24.2
FAN20G1338 Fragaria x ananassa HOM05D004021 ORTHO05D003767 2.3e-30 139.0 469 29.0
Nitab4.5_0000664g0250 Nicotiana tabacum HOM05D004021 ORTHO05D003767 5.0e-30 137.9 1277 23.2
Sopen11g028940 Solanum pennellii HOM05D004021 ORTHO05D003767 5.0e-30 137.9 1292 24.2
BraA06t26563Z Brassica rapa HOM05D004021 ORTHO05D003767 1.1e-29 136.7 1197 24.6
Nitab4.5_0000664g0210 Nicotiana tabacum HOM05D004021 ORTHO05D003767 3.6e-28 131.7 1270 24.1
Atru.chr7.2139 Acer truncatum HOM05D004021 ORTHO05D003767 1.5e-26 126.3 271 33.2
Peaxi162Scf00276g00210 Petunia axillaris HOM05D004021 ORTHO05D003767 4.4e-26 124.8 1277 22.9
CSS0003638 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 7.5e-26 124.0 1254 22.4
MBI01_g30860_MAGBIO Magnolia biondii HOM05D004021 ORTHO05D003767 9.8e-26 123.6 1299 22.6
FAN13G2039 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.9e-24 119.4 307 32.2
Dinv30474 Davidia involucrata HOM05D004021 ORTHO05D003767 5.4e-24 117.9 513 26.9
FAN20G0872 Fragaria x ananassa HOM05D004021 ORTHO05D003767 5.4e-24 117.9 280 33.2
Lj4g0004076 Lotus japonicus HOM05D032889 ORTHO05D003767 9.2e-24 117.1 425 28.5
DCAR_007709 Daucus carota HOM05D004021 ORTHO05D003767 6.0e-23 114.4 641 26.4
Dinv38014 Davidia involucrata HOM05D004021 ORTHO05D003767 1.0e-22 113.6 737 26.3
Eucgr.E03518 Eucalyptus grandis HOM05D004021 ORTHO05D003767 1.7e-22 112.8 570 28.6
Lj8P589T23 Lonicera japonica HOM05D004021 ORTHO05D003767 6.6e-22 110.9 581 26.3
Cpa.g.sc7.255 Carica papaya HOM05D004021 ORTHO05D003767 4.3e-21 108.2 437 28.1
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 9.5e-21 107.1 727 26.1
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 1.2e-20 106.7 722 26.5
Thhalv10015703m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 2.1e-20 105.9 1183 22.9
SHI18661 Sapria himalayana HOM05D004021 ORTHO05D003767 1.5e-18 99.8 490 28.0
vmacro18883 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 2.0e-18 99.4 1223 22.2
Glyma.17G195000 Glycine max HOM05D004021 ORTHO05D003767 1.3e-17 96.7 300 30.3
Sc09g0009160 Simmondsia chinensis HOM05D012164 ORTHO05D003767 2.4e-16 92.4 1239 23.5
MSTRG.1655 Avicennia marina HOM05D004021 ORTHO05D003767 5.4e-16 91.3 1201 21.2
Lalb_Chr14g0372311 Lupinus albus HOM05D004021 ORTHO05D003767 9.2e-16 90.5 749 23.8
Hund03406 Selenicereus undatus HOM05D012164 ORTHO05D003767 1.2e-15 90.1 1110 23.2
PSO782G1327 Papaver somniferum HOM05D004021 ORTHO05D003767 5.1e-14 84.7 341 29.3
Cpa.g.sc7.254 Carica papaya HOM05D004021 ORTHO05D003767 6.6e-14 84.3 94 53.2
SGA_v2.0_scaffold163G38081 Striga asiatica HOM05D004021 ORTHO05D003767 1.5e-13 83.2 1155 21.6
SalBow1G4226 Salvia bowleyana HOM05D004021 ORTHO05D003767 1.8e-11 76.3 1058 22.5
BcaNung04838 Brassica carinata HOM05D004021 ORTHO05D003767 6.8e-11 74.3 243 30.0
Oeu012193.1 Olea europaea HOM05D004021 ORTHO05D003767 6.8e-11 74.3 1195 22.2
Lj8A589T33 Lonicera japonica HOM05D004021 ORTHO05D003767 3.4e-10 72.0 185 31.4
Nitab4.5_0000500g0270 Nicotiana tabacum HOM05D004021 ORTHO05D003767 7.6e-10 70.9 87 47.1
FAN05G2999 Fragaria x ananassa HOM05D004021 ORTHO05D003767 3.8e-09 68.6 264 26.1
TAR626G0813 Trochodendron aralioides HOM05D004021 ORTHO05D003767 3.8e-09 68.6 112 39.3
SGA_v2.0_scaffold169G38653 Striga asiatica HOM05D004021 ORTHO05D003767 4.9e-09 68.2 235 28.5
SalBow4G0344 Salvia bowleyana HOM05D004021 ORTHO05D003767 6.4e-09 67.8 112 35.7
ECA233G1986 Erigeron canadensis HOM05D004021 ORTHO05D003767 8.4e-09 67.4 527 26.2
Rhsim08G0224000 Rhododendron simsii HOM05D004021 ORTHO05D003767 8.4e-09 67.4 1154 20.2
Aqoxy7G01578 Aquilegia oxysepala HOM05D065736 ORTHO05D038511 1.1e-08 67.0 333 26.7
DCAR_003118 Daucus carota HOM05D004021 ORTHO05D003767 1.4e-08 66.6 69 47.8
Oeu031555.1 Olea europaea HOM05D004021 ORTHO05D003767 2.4e-08 65.9 1175 21.4
Migut.E01516 Erythranthe guttata HOM05D004021 ORTHO05D003767 7.1e-08 64.3 1189 22.6
Nitab4.5_0002178g0010 Nicotiana tabacum HOM05D004021 ORTHO05D003767 7.1e-08 64.3 325 27.4
Dinv10761 Davidia involucrata HOM05D024977 ORTHO05D003767 9.2e-08 63.9 89 33.7
Dinv30643 Davidia involucrata HOM05D024977 ORTHO05D003767 9.2e-08 63.9 89 33.7
VMungo0647G2380 Vigna mungo HOM05D058389 ORTHO05D003767 2.1e-07 62.8 382 25.9
MSTRG.14021 Avicennia marina HOM05D004021 ORTHO05D003767 6.0e-07 61.2 116 32.8
unitig_578.g16592 Utricularia gibba HOM05D004021 ORTHO05D003767 7.8e-07 60.8 96 40.6
Cc08_g09190 Coffea canephora HOM05D004021 ORTHO05D003767 1.3e-06 60.1 250 28.0
Oeu015740.1 Olea europaea HOM05D004021 ORTHO05D003767 1.3e-06 60.1 205 27.8
Nitab4.5_0000406g0040 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.7e-06 59.7 469 22.8
Phvul.008G216900 Phaseolus vulgaris HOM05D058389 ORTHO05D003767 1.7e-06 59.7 329 24.0


User provided reference genes

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