Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G13893 Trifolium pratense HOM05D004439 ORTHO05D005670 1.5e-197 692.6 322 100.0
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 6.8e-171 604.0 434 68.9
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 7.8e-167 590.5 432 68.1
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 1.5e-165 586.3 434 68.2
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 3.6e-164 581.6 460 63.9
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 5.4e-152 541.2 434 63.1
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 5.1e-150 534.6 434 61.3
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 8.7e-150 533.9 435 62.1
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 6.2e-148 527.7 434 61.1
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 9.0e-147 523.9 427 60.9
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 3.4e-146 521.9 427 60.7
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 5.4e-144 514.6 423 60.3
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 5.4e-144 514.6 427 60.4
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 5.4e-144 514.6 425 60.5
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 7.1e-144 514.2 425 60.5
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 1.6e-143 513.1 426 59.6
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 7.9e-143 510.8 425 59.1
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 7.9e-143 510.8 428 59.8
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 6.6e-142 507.7 433 59.4
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 6.6e-142 507.7 426 59.4
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 7.3e-141 504.2 426 59.2
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 1.3e-140 503.4 425 59.1
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 1.6e-140 503.1 423 58.4
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 2.8e-140 502.3 427 58.8
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 3.6e-140 501.9 427 58.8
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 6.2e-140 501.1 425 58.1
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 8.1e-140 500.7 421 58.7
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 1.1e-139 500.4 426 58.5
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 1.4e-139 500.0 436 57.8
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 2.4e-139 499.2 425 58.4
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 1.2e-138 496.9 425 58.1
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 1.2e-138 496.9 427 57.8
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 1.2e-138 496.9 422 57.8
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 1.5e-138 496.5 423 57.4
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 4.5e-138 495.0 423 57.2
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 5.8e-138 494.6 427 57.1
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 9.9e-138 493.8 426 57.5
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 9.9e-138 493.8 426 57.5
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 9.9e-138 493.8 424 57.8
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 9.9e-138 493.8 424 58.5
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 1.3e-137 493.4 419 57.3
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 2.2e-137 492.7 426 58.2
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 3.8e-137 491.9 437 57.0
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 3.8e-137 491.9 437 57.0
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 4.9e-137 491.5 440 57.5
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 5.4e-136 488.0 437 56.5
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 5.4e-136 488.0 424 58.0
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 1.6e-135 486.5 424 59.0
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 3.9e-134 481.9 423 56.0
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 3.3e-133 478.8 423 55.8
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 1.3e-132 476.9 428 55.6
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 8.1e-132 474.2 402 58.5
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 4.0e-131 471.9 452 54.2
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 5.3e-131 471.5 415 55.4
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 5.3e-131 471.5 421 57.0
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 5.8e-130 468.0 418 57.2
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 1.7e-129 466.5 415 54.7
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 3.8e-129 465.3 418 57.2
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 4.2e-128 461.8 419 54.4
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 4.2e-128 461.8 440 54.8
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 9.3e-128 460.7 417 56.1
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 1.6e-127 459.9 427 54.8
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.8e-126 456.4 439 54.4
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 6.7e-126 454.5 423 54.6
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 1.1e-125 453.8 433 52.9
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 1.1e-125 453.8 432 51.9
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.1e-125 453.8 438 54.3
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.1e-125 453.8 440 54.1
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 1.5e-125 453.4 404 55.4
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 1.9e-125 453.0 433 52.4
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 2.5e-125 452.6 433 52.7
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 4.3e-125 451.8 436 52.8
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 7.4e-125 451.1 465 51.0
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 1.3e-124 450.3 422 53.6
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 1.3e-124 450.3 424 53.5
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.6e-124 449.9 439 53.8
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 2.1e-124 449.5 426 54.9
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 3.7e-124 448.7 419 54.7
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 6.3e-124 448.0 410 54.9
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 1.1e-123 447.2 432 52.3
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 1.5e-122 443.4 435 52.2
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 2.6e-122 442.6 432 52.3
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 2.6e-122 442.6 429 52.0
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 1.3e-121 440.3 436 52.3
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 2.2e-121 439.5 436 52.1
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 2.9e-121 439.1 429 53.1
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 3.8e-121 438.7 431 52.4
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 1.4e-120 436.8 442 50.9
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 3.2e-120 435.6 433 52.4
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 3.2e-120 435.6 433 52.4
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 5.5e-120 434.9 433 51.7
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 1.6e-119 433.3 407 55.0
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 1.8e-118 429.9 398 53.5
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 1.9e-117 426.4 437 51.5
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 1.9e-117 426.4 455 50.3
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 5.7e-117 424.9 433 50.1
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 7.4e-117 424.5 432 51.2
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 3.1e-115 419.1 433 52.0
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 6.9e-115 417.9 363 57.0
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 1.1e-112 410.6 442 48.9
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 1.9e-112 409.8 371 57.4
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 3.2e-112 409.1 429 51.3
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 6.1e-111 404.8 425 49.4
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 7.4e-109 397.9 507 45.6
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 1.3e-108 397.1 440 48.0
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 4.8e-108 395.2 403 51.4
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 1.4e-107 393.7 356 55.6
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 6.9e-107 391.3 394 50.5
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 6.5e-105 384.8 464 45.9
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 9.4e-104 380.9 441 43.1
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 1.6e-103 380.2 442 43.4
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 1.1e-101 374.0 439 46.9
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 2.6e-101 372.9 395 49.6
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 7.0e-99 364.8 379 52.0
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 5.5e-96 355.1 327 57.2
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 1.7e-92 343.6 178 84.8
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 1.4e-91 340.5 179 83.8
MD14G1127500 Malus domestica HOM05D004439 ORTHO05D005670 3.5e-90 335.9 178 83.7
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 8.5e-89 331.3 331 52.3
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 1.2e-85 320.9 468 41.9
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.3e-84 317.4 327 50.2
RcHm_v2.0_Chr6g0245381 Rosa chinensis HOM05D004439 ORTHO05D005670 2.2e-84 316.6 178 80.3
SMO361G0219 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 4.5e-82 308.9 339 47.2
SMO361G0316 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 7.7e-82 308.1 339 47.2
Cre07.g312350 Chlamydomonas reinhardtii HOM05D004439 ORTHO05D005670 7.0e-75 285.0 372 41.1
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 1.9e-72 276.9 150 81.3
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 1.2e-71 274.2 290 51.7
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 7.5e-69 265.0 411 40.9
TPR.G9934 Trifolium pratense HOM05D004439 ORTHO05D005670 4.9e-68 262.3 165 83.0
Cfa025390 Carpinus fangiana HOM05D004439 ORTHO05D005670 3.9e-65 252.7 417 35.5
PRCOL_00003494 Prasinoderma coloniale HOM05D004439 ORTHO05D005670 8.6e-65 251.5 419 35.8
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 9.5e-64 248.1 289 46.0
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 2.3e-49 200.3 234 48.7
RcHm_v2.0_Chr6g0245391 Rosa chinensis HOM05D004439 ORTHO05D005670 4.7e-47 192.6 117 76.1
PSO063G0793 Papaver somniferum HOM05D004439 ORTHO05D005670 3.2e-43 179.9 132 65.2
TPR.G9939 Trifolium pratense HOM05D004439 ORTHO05D005670 3.2e-43 179.9 187 53.5
MD14G1127600 Malus domestica HOM05D004439 ORTHO05D005670 2.9e-36 156.8 109 67.9
Os05g0358200 Oryza sativa ssp. japonica HOM05D004439 ORTHO05D005670 1.4e-35 154.5 85 82.4
PGSC0003DMG400012290 Solanum tuberosum HOM05D004439 ORTHO05D005670 2.4e-35 153.7 126 59.5
MELO3C027184.2 Cucumis melo HOM05D004439 ORTHO05D005670 5.6e-32 142.5 65 90.8
AL3G52130 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 2.7e-26 123.6 92 65.2
AL1G55640 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.0e-25 121.7 90 65.6
SEGI_14966 Sequoiadendron giganteum HOM05D004439 ORTHO05D005670 1.3e-25 121.3 112 52.7
AL1G44430 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 5.6e-24 115.9 85 65.9
SEGI_35904 Sequoiadendron giganteum HOM05D004439 ORTHO05D000007 2.2e-20 104.0 128 41.4
MD06G1072700 Malus domestica HOM05D004439 ORTHO05D005670 1.9e-19 100.9 53 84.9
Lj2A169G39 Lonicera japonica HOM05D004439 ORTHO05D005670 2.1e-18 97.4 71 60.6
AL2G23180 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.8e-14 84.3 71 59.2
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 1.9e-11 74.3 32 90.6
TPR.G3794 Trifolium pratense HOM05D004439 ORTHO05D005670 7.1e-11 72.4 33 87.9
Actinidia27321 Actinidia chinensis HOM05D004439 ORTHO05D005670 2.5e-08 63.9 42 66.7
Actinidia22721 Actinidia chinensis HOM05D004439 ORTHO05D057326 2.1e-07 60.8 61 54.1


User provided reference genes

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