Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G13876 Trifolium pratense HOM05D005827 ORTHO05D005864 1.4e-63 246.5 163 100.0
Ca_30413_v3 Cicer arietinum L. HOM05D005827 ORTHO05D005864 1.5e-41 173.3 164 61.0
Medtr1g107495 Medicago truncatula HOM05D005827 ORTHO05D005864 1.6e-35 153.3 164 72.6
Ca_06388_v3 Cicer arietinum L. HOM05D005827 ORTHO05D005864 2.4e-31 139.4 136 57.4
Psat6g219720 Pisum sativum HOM05D005827 ORTHO05D005864 1.3e-29 133.7 173 59.0
Lj5g0000760 Lotus japonicus HOM05D005827 ORTHO05D005864 3.6e-27 125.6 109 62.4
Lj3g0023632 Lotus japonicus HOM05D005827 ORTHO05D005864 5.2e-26 121.7 109 61.5
Phvul.007G038800 Phaseolus vulgaris HOM05D005827 ORTHO05D005864 4.4e-25 118.6 155 49.7
Lalb_Chr21g0308391 Lupinus albus HOM05D005827 ORTHO05D005864 1.7e-24 116.7 165 44.8
Ciclev10030223m.g Citrus clementina HOM05D005827 ORTHO05D005864 1.8e-23 113.2 112 56.2
Cpa.g.sc246.10 Carica papaya HOM05D005827 ORTHO05D005864 9.2e-23 110.9 115 58.3
Duzib132G0170 Durio zibethinus HOM05D005827 ORTHO05D005864 9.2e-23 110.9 164 45.1
Prupe.1G568500 Prunus persica HOM05D005827 ORTHO05D005864 1.2e-22 110.5 113 57.5
Glyma.12G113700 Glycine max HOM05D005827 ORTHO05D005864 1.0e-21 107.5 110 55.5
Dinv15756 Davidia involucrata HOM05D005827 ORTHO05D005864 2.9e-21 105.9 115 53.0
Haze_10160 Corylus avellana HOM05D005827 ORTHO05D005864 3.9e-21 105.5 95 56.8
Thecc.02G106700 Theobroma cacao HOM05D005827 ORTHO05D005864 3.9e-21 105.5 98 54.1
CiPaw.06G170100 Carya illinoinensis HOM05D005827 ORTHO05D005864 8.6e-21 104.4 113 54.9
Nitab4.5_0000209g0220 Nicotiana tabacum HOM05D005827 ORTHO05D005864 1.9e-20 103.2 112 53.6
BcaB07g30381 Brassica carinata HOM05D005827 ORTHO05D005864 5.6e-20 101.7 113 52.2
Solyc12g056030.2 Solanum lycopersicum HOM05D005827 ORTHO05D005864 5.6e-20 101.7 112 53.6
Sopen12g028550 Solanum pennellii HOM05D005827 ORTHO05D005864 5.6e-20 101.7 112 53.6
PGSC0003DMG400005012 Solanum tuberosum HOM05D005827 ORTHO05D005864 5.6e-20 101.7 112 53.6
MD08G1229200 Malus domestica HOM05D005827 ORTHO05D005864 7.3e-20 101.3 113 54.9
Potri.009G097000 Populus trichocarpa HOM05D005827 ORTHO05D005864 9.5e-20 100.9 113 53.1
C02p49840 Brassica napus HOM05D005827 ORTHO05D005864 1.6e-19 100.1 116 50.0
A02p32240 Brassica napus HOM05D005827 ORTHO05D005864 6.1e-19 98.2 116 49.1
BraA02t08240Z Brassica rapa HOM05D005827 ORTHO05D005864 6.1e-19 98.2 116 49.1
Hma1.2p1_0796F.1_g219120 Hydrangea macrophylla HOM05D005827 ORTHO05D005864 6.1e-19 98.2 112 50.0
Peaxi162Scf00880g00322 Petunia axillaris HOM05D005827 ORTHO05D005864 6.1e-19 98.2 112 53.6
BcaC03g17064 Brassica carinata HOM05D005827 ORTHO05D005864 8.0e-19 97.8 116 49.1
CAN.G517.16 Capsicum annuum HOM05D005827 ORTHO05D005864 1.8e-18 96.7 112 52.7
BolC2t11063H Brassica oleracea HOM05D005827 ORTHO05D005864 2.3e-18 96.3 116 48.3
Carub.0005s0059 Capsella rubella HOM05D005827 ORTHO05D005864 3.1e-18 95.9 106 54.7
Nitab4.5_0011210g0030 Nicotiana tabacum HOM05D000771 ORTHO05D005864 3.1e-18 95.9 111 50.5
Aa31sc215G30 Aethionema arabicum HOM05D005827 ORTHO05D005864 4.0e-18 95.5 114 50.9
Atru.chr5.2579 Acer truncatum HOM05D005827 ORTHO05D005864 5.2e-18 95.1 114 50.0
THA.LOC104823732 Tarenaya hassleriana HOM05D005827 ORTHO05D005864 6.8e-18 94.7 114 50.0
Manes.10G074300 Manihot esculenta HOM05D005827 ORTHO05D005864 1.2e-17 94.0 114 50.9
Eucgr.G01363 Eucalyptus grandis HOM05D005827 ORTHO05D005864 1.5e-17 93.6 113 49.6
Sp2g13090 Schrenkiella parvula HOM05D005827 ORTHO05D005864 1.5e-17 93.6 106 51.9
Aqoxy5G03364 Aquilegia oxysepala HOM05D005827 ORTHO05D005864 2.0e-17 93.2 113 51.3
MSTRG.27741 Avicennia marina HOM05D005827 ORTHO05D005864 2.0e-17 93.2 112 53.6
Lj9A321T79 Lonicera japonica HOM05D005827 ORTHO05D005864 2.6e-17 92.8 113 47.8
Nn1g04717 Nelumbo nucifera HOM05D005827 ORTHO05D005864 2.6e-17 92.8 114 49.1
Glyma.20G127400 Glycine max HOM05D005827 ORTHO05D005864 4.4e-17 92.0 111 50.5
TAR381G1673 Trochodendron aralioides HOM05D005827 ORTHO05D005864 1.3e-16 90.5 113 48.7
Eucgr.H03226 Eucalyptus grandis HOM05D005827 ORTHO05D005864 2.2e-16 89.7 106 48.1
PSO210G1068 Papaver somniferum HOM05D005827 ORTHO05D005864 2.2e-16 89.7 112 47.3
Rhsim11G0160600 Rhododendron simsii HOM05D005827 ORTHO05D005864 2.2e-16 89.7 111 48.6
GSVIVG01003168001 Vitis vinifera HOM05D005827 ORTHO05D005864 2.2e-16 89.7 112 48.2
PSO170G4182 Papaver somniferum HOM05D005827 ORTHO05D005864 2.9e-16 89.4 112 48.2
MD15G1423200 Malus domestica HOM05D005827 ORTHO05D005864 3.7e-16 89.0 113 50.4
Nitab4.5_0001647g0080 Nicotiana tabacum HOM05D005827 ORTHO05D005864 3.7e-16 89.0 100 51.0
COL.COLO4_32605 Corchorus olitorius HOM05D005827 ORTHO05D005864 6.4e-16 88.2 113 46.0
Migut.N01172 Erythranthe guttata HOM05D005827 ORTHO05D005864 8.3e-16 87.8 114 49.1
CSS0006486 Camellia sinensis var. sinensis HOM05D005827 ORTHO05D005864 1.1e-15 87.4 112 49.1
PGR042G1992 Punica granatum HOM05D005827 ORTHO05D005864 3.2e-15 85.9 85 50.6
arahy.Tifrunner.gnm1.ann1.M92LVR Arachis hypogaea HOM05D005827 ORTHO05D005864 5.4e-15 85.1 114 45.6
Gohir.D02G207600 Gossypium hirsutum HOM05D005827 ORTHO05D005864 5.4e-15 85.1 164 40.2
Gorai.005G235500 Gossypium raimondii HOM05D005827 ORTHO05D005864 5.4e-15 85.1 164 40.2
Sc08g0001470 Simmondsia chinensis HOM05D005827 ORTHO05D005864 7.0e-15 84.7 115 47.0
FAN04G0262 Fragaria x ananassa HOM05D005827 ORTHO05D005864 9.2e-15 84.3 101 51.5
Gohir.A03G186800 Gossypium hirsutum HOM05D005827 ORTHO05D005864 9.2e-15 84.3 113 47.8
CANSAT11G0172 Cannabis sativa HOM05D005827 ORTHO05D005864 1.2e-14 84.0 84 53.6
Hund00127 Selenicereus undatus HOM05D005827 ORTHO05D005864 2.7e-14 82.8 78 55.1
SGA_v2.0_scaffold42G16001 Striga asiatica HOM05D005827 ORTHO05D005864 3.5e-14 82.4 108 48.1
TAR625G0497 Trochodendron aralioides HOM05D005827 ORTHO05D005864 3.5e-14 82.4 112 42.9
TAR625G1254 Trochodendron aralioides HOM05D005827 ORTHO05D005864 3.5e-14 82.4 112 42.9
SalBow3G3341 Salvia bowleyana HOM05D005827 ORTHO05D005864 6.0e-14 81.6 170 36.5
QL11p034047 Quercus lobata HOM05D005827 ORTHO05D005864 7.8e-14 81.3 111 45.9
DCAR_029081 Daucus carota HOM05D005827 ORTHO05D005864 1.3e-13 80.5 112 45.5
HanXRQChr16g0514881 Helianthus annuus HOM05D005827 ORTHO05D005864 1.3e-13 80.5 113 46.0
QL11p033993 Quercus lobata HOM05D005827 ORTHO05D005864 1.3e-13 80.5 111 45.0
RcHm_v2.0_Chr7g0222441 Rosa chinensis HOM05D005827 ORTHO05D005864 1.3e-13 80.5 76 55.3
ClCG04G002790 Citrullus lanatus HOM05D005827 ORTHO05D005864 1.7e-13 80.1 116 41.4
EL10Ac9g22299 Beta vulgaris HOM05D005827 ORTHO05D005864 2.3e-13 79.7 163 36.2
Sabra09G0074500 Salix brachista HOM05D005827 ORTHO05D005864 2.3e-13 79.7 148 39.9
Thhalv10005665m.g Eutrema salsugineum HOM05D005827 ORTHO05D005864 3.9e-13 79.0 128 42.2
Lsat_1_v5_gn_5_114720 Lactuca sativa HOM05D005827 ORTHO05D005864 5.0e-13 78.6 89 49.4
MELO3C003274.2 Cucumis melo HOM05D005827 ORTHO05D005864 8.6e-13 77.8 116 41.4
ECA234G2840 Erigeron canadensis HOM05D005827 ORTHO05D005864 8.6e-13 77.8 89 48.3
Sabra09G0074600 Salix brachista HOM05D005827 ORTHO05D005864 8.6e-13 77.8 115 47.8
Sed0003004 Sechium edule HOM05D005827 ORTHO05D005864 8.6e-13 77.8 115 46.1
Zm00001eb133530 Zea mays HOM05D005827 ORTHO05D005864 8.6e-13 77.8 115 42.6
SGA_v2.0_scaffold393G50707 Striga asiatica HOM05D005827 ORTHO05D005864 1.1e-12 77.4 108 47.2
vmacro14445 Vaccinium macrocarpon HOM05D005827 ORTHO05D005864 1.1e-12 77.4 113 48.7
Cc02_g19170 Coffea canephora HOM05D005827 ORTHO05D005864 1.5e-12 77.0 113 46.0
FvH4_5g29540 Fragaria vesca HOM05D005827 ORTHO05D005864 1.5e-12 77.0 76 55.3
TWI31G0230 Tripterygium wilfordii HOM05D005827 ORTHO05D005864 1.5e-12 77.0 87 54.0
FAN08G1793 Fragaria x ananassa HOM05D005827 ORTHO05D005864 3.3e-12 75.9 76 53.9
Hund00128 Selenicereus undatus HOM05D005827 ORTHO05D005864 3.3e-12 75.9 78 51.3
Zm00001eb350190 Zea mays HOM05D005827 ORTHO05D005864 3.3e-12 75.9 113 43.4
arahy.Tifrunner.gnm1.ann1.HL4A43 Arachis hypogaea HOM05D005827 ORTHO05D005864 4.3e-12 75.5 116 40.5
unitig_94.g28296 Utricularia gibba HOM05D005827 ORTHO05D005864 4.3e-12 75.5 109 44.0
unitig_94.g28309 Utricularia gibba HOM05D005827 ORTHO05D005864 4.3e-12 75.5 109 44.0
AUR62010278 Chenopodium quinoa HOM05D005827 ORTHO05D005864 5.6e-12 75.1 163 35.6
Zm00001eb006370 Zea mays HOM05D005827 ORTHO05D005864 5.6e-12 75.1 77 53.2
FAN18G4374 Fragaria x ananassa HOM05D005827 ORTHO05D005864 7.3e-12 74.7 76 52.6
FAN13G0291 Fragaria x ananassa HOM05D005827 ORTHO05D005864 9.5e-12 74.3 76 52.6
Aa31LG2G8260 Aethionema arabicum HOM05D005827 ORTHO05D005864 2.1e-11 73.2 77 49.4
Zm00001eb207600 Zea mays HOM05D005827 ORTHO05D005864 2.1e-11 73.2 88 46.6
AL5G10740 Arabidopsis lyrata HOM05D005827 ORTHO05D005864 2.8e-11 72.8 77 50.6
MD05G1087800 Malus domestica HOM05D005827 ORTHO05D005864 4.7e-11 72.0 110 40.9
Zm00001eb259520 Zea mays HOM05D005827 ORTHO05D005864 1.4e-10 70.5 113 40.7
Zm00001eb324360 Zea mays HOM05D005827 ORTHO05D005864 1.8e-10 70.1 113 40.7
AT2G01640 Arabidopsis thaliana HOM05D005827 ORTHO05D005864 4.0e-10 68.9 105 43.8
AUR62044681 Chenopodium quinoa HOM05D005827 ORTHO05D005864 1.5e-09 67.0 72 50.0
HPP92_026144 Vanilla planifolia HOM05D005827 ORTHO05D005864 1.5e-09 67.0 112 41.1
AUR62039111 Chenopodium quinoa HOM05D005827 ORTHO05D005864 2.0e-09 66.6 69 52.2
Zm00001eb091410 Zea mays HOM05D005827 ORTHO05D005864 3.4e-09 65.9 100 43.0
Zm00001eb324920 Zea mays HOM05D005827 ORTHO05D005864 4.4e-09 65.5 113 38.9
CDE01G0172 Ceratophyllum demersum HOM05D005827 ORTHO05D005864 5.8e-09 65.1 112 39.3
CiPaw.07G088900 Carya illinoinensis HOM05D005827 ORTHO05D005864 7.5e-09 64.7 86 46.5
CsaV3_4G029930 Cucumis sativus L. HOM05D005827 ORTHO05D005864 1.3e-08 63.9 94 37.2
Os12g0244500 Oryza sativa ssp. japonica HOM05D005827 ORTHO05D005864 2.9e-08 62.8 97 42.3
Nn2g12688 Nelumbo nucifera HOM05D005827 ORTHO05D005864 4.9e-08 62.0 44 70.5
MELO3C033554.2 Cucumis melo HOM05D005827 ORTHO05D005864 6.4e-08 61.6 90 36.7
QL11p034007 Quercus lobata HOM05D005827 ORTHO05D005864 1.4e-07 60.5 102 38.2
ATR0691G195 Amborella trichopoda HOM05D005827 ORTHO05D005864 1.2e-06 57.4 72 40.3
CANSAT25G3357 Cannabis sativa HOM05D005827 ORTHO05D005864 1.2e-06 57.4 59 50.8
SEGI_38856 Sequoiadendron giganteum HOM05D005827 ORTHO05D005864 4.6e-06 55.5 105 35.2


User provided reference genes

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