Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G13867 Trifolium pratense HOM05D000049 ORTHO05D008785 4.3e-72 274.6 147 100.0
Psat6g219680 Pisum sativum HOM05D000049 ORTHO05D008785 1.4e-57 226.5 147 84.4
Medtr1g107490 Medicago truncatula HOM05D000049 ORTHO05D008785 2.7e-50 202.2 133 83.5
Lj5g0006015 Lotus japonicus HOM05D000049 ORTHO05D008785 1.1e-46 190.3 147 71.4
Phvul.007G038900 Phaseolus vulgaris HOM05D000049 ORTHO05D008785 7.7e-45 184.1 145 69.7
Lalb_Chr02g0145351 Lupinus albus HOM05D000049 ORTHO05D008785 1.3e-44 183.3 147 64.6
Glyma.10G263000 Glycine max HOM05D000049 ORTHO05D008785 1.7e-44 183.0 145 69.7
VMungo0720G1000 Vigna mungo HOM05D000049 ORTHO05D008785 3.8e-44 181.8 145 69.7
Glyma.20G127500 Glycine max HOM05D000049 ORTHO05D008785 7.2e-43 177.6 145 67.6
Glyma.20G129600 Glycine max HOM05D000049 ORTHO05D008785 1.3e-39 166.8 145 63.4
Duzib248G1051 Durio zibethinus HOM05D000049 ORTHO05D008785 3.1e-38 162.2 146 62.3
Duzib132G0396 Durio zibethinus HOM05D000049 ORTHO05D008785 7.0e-38 161.0 144 61.8
Thecc.02G106900 Theobroma cacao HOM05D000049 ORTHO05D008785 9.1e-38 160.6 148 62.8
Prupe.8G134100 Prunus persica HOM05D000049 ORTHO05D008785 2.0e-37 159.5 146 64.4
Ciclev10029534m.g Citrus clementina HOM05D000049 ORTHO05D008785 1.3e-36 156.8 145 63.4
MD05G1088100 Malus domestica HOM05D000049 ORTHO05D008785 5.0e-36 154.8 146 61.6
Oeu010393.1 Olea europaea HOM05D000049 ORTHO05D008785 6.5e-36 154.5 147 60.5
Haze_10161 Corylus avellana HOM05D000049 ORTHO05D008785 8.5e-36 154.1 149 63.8
GSVIVG01003167001 Vitis vinifera HOM05D000049 ORTHO05D008785 1.1e-35 153.7 157 59.9
Atru.chr5.2581 Acer truncatum HOM05D000049 ORTHO05D008785 2.5e-35 152.5 146 61.0
QL11p033983 Quercus lobata HOM05D000049 ORTHO05D008785 2.5e-35 152.5 145 62.1
Cfa004569 Carpinus fangiana HOM05D000049 ORTHO05D008785 3.2e-35 152.1 149 63.1
CANSAT25G0973 Cannabis sativa HOM05D000049 ORTHO05D008785 4.2e-35 151.8 150 62.7
Eucgr.H03224 Eucalyptus grandis HOM05D000049 ORTHO05D008785 7.2e-35 151.0 146 63.0
FAN20G0640 Fragaria x ananassa HOM05D000049 ORTHO05D008785 7.2e-35 151.0 145 60.7
FvH4_2g05321 Fragaria vesca HOM05D000049 ORTHO05D008785 1.2e-34 150.2 145 60.0
Potri.009G096800 Populus trichocarpa HOM05D000049 ORTHO05D008785 1.2e-34 150.2 145 59.3
Hma1.2p1_0796F.1_g219130 Hydrangea macrophylla HOM05D000049 ORTHO05D008785 2.7e-34 149.1 148 62.8
Potri.001G301100 Populus trichocarpa HOM05D000049 ORTHO05D008785 2.7e-34 149.1 145 60.0
RcHm_v2.0_Chr6g0255531 Rosa chinensis HOM05D000049 ORTHO05D008785 3.6e-34 148.7 145 60.7
Gohir.D02G207500 Gossypium hirsutum HOM05D000049 ORTHO05D008785 6.1e-34 147.9 150 58.0
Nn1g04714 Nelumbo nucifera HOM05D000049 ORTHO05D008785 6.1e-34 147.9 115 69.6
CANSAT25G0620 Cannabis sativa HOM05D000049 ORTHO05D008785 1.0e-33 147.1 148 61.5
Manes.02G137400 Manihot esculenta HOM05D000049 ORTHO05D008785 1.0e-33 147.1 148 60.1
Aqoxy5G01153 Aquilegia oxysepala HOM05D000049 ORTHO05D008785 1.8e-33 146.4 118 67.8
arahy.Tifrunner.gnm1.ann1.KJA62A Arachis hypogaea HOM05D000049 ORTHO05D008785 3.0e-33 145.6 165 53.3
Gohir.A03G186700 Gossypium hirsutum HOM05D000049 ORTHO05D008785 3.0e-33 145.6 144 59.7
Gorai.005G235400 Gossypium raimondii HOM05D000049 ORTHO05D008785 3.0e-33 145.6 150 57.3
Sabra16G0189300 Salix brachista HOM05D000049 ORTHO05D008785 3.0e-33 145.6 145 58.6
AUR62039109 Chenopodium quinoa HOM05D000049 ORTHO05D008785 5.2e-33 144.8 146 59.6
Atru.chr11.1081 Acer truncatum HOM05D000049 ORTHO05D008785 6.7e-33 144.4 144 59.0
CiPaw.06G170000 Carya illinoinensis HOM05D000049 ORTHO05D008785 6.7e-33 144.4 145 61.4
Cc02_g19180 Coffea canephora HOM05D000049 ORTHO05D008785 6.7e-33 144.4 146 59.6
arahy.Tifrunner.gnm1.ann1.MU25MQ Arachis hypogaea HOM05D000049 ORTHO05D008785 8.8e-33 144.1 97 73.2
Hund06332 Selenicereus undatus HOM05D000049 ORTHO05D008785 8.8e-33 144.1 148 56.8
EL10Ac9g22295 Beta vulgaris HOM05D000049 ORTHO05D008785 1.5e-32 143.3 146 56.2
Cpa.g.sc106.84 Carica papaya HOM05D000049 ORTHO05D008785 2.6e-32 142.5 148 60.1
TAR381G1170 Trochodendron aralioides HOM05D000049 ORTHO05D008785 4.4e-32 141.7 144 56.9
CDE02G2484 Ceratophyllum demersum HOM05D000049 ORTHO05D008785 7.5e-32 141.0 145 54.5
SalBow3G3686 Salvia bowleyana HOM05D000049 ORTHO05D008785 9.7e-32 140.6 128 68.0
Solyc01g107660.3 Solanum lycopersicum HOM05D000049 ORTHO05D008785 9.7e-32 140.6 147 56.5
Oeu018599.1 Olea europaea HOM05D000049 ORTHO05D008785 1.3e-31 140.2 178 50.6
CiPaw.05G010600 Carya illinoinensis HOM05D000049 ORTHO05D008785 1.7e-31 139.8 103 70.9
HanXRQChr03g0070281 Helianthus annuus HOM05D000049 ORTHO05D008785 1.7e-31 139.8 119 64.7
AUR62010281 Chenopodium quinoa HOM05D000049 ORTHO05D008785 2.2e-31 139.4 146 56.2
CAN.G1231.12 Capsicum annuum HOM05D000049 ORTHO05D008785 3.7e-31 138.7 147 57.1
ClCG02G006290 Citrullus lanatus HOM05D000049 ORTHO05D008785 4.8e-31 138.3 147 58.5
SGA_v2.0_scaffold393G50708 Striga asiatica HOM05D000049 ORTHO05D008785 4.8e-31 138.3 107 70.1
Migut.N01171 Erythranthe guttata HOM05D000049 ORTHO05D008785 1.1e-30 137.1 107 70.1
Sc08g0001450 Simmondsia chinensis HOM05D000049 ORTHO05D008785 1.1e-30 137.1 147 56.5
CsaV3_7G008250 Cucumis sativus L. HOM05D000049 ORTHO05D008785 1.4e-30 136.7 146 57.5
Peaxi162Scf00016g02238 Petunia axillaris HOM05D000049 ORTHO05D008785 1.4e-30 136.7 147 59.2
Ah.01g018130 Amaranthus hybridus HOM05D000049 ORTHO05D008785 1.8e-30 136.3 147 57.1
PGSC0003DMG400025866 Solanum tuberosum HOM05D000049 ORTHO05D008785 1.8e-30 136.3 150 58.0
AT4G34190 Arabidopsis thaliana HOM05D000049 ORTHO05D008785 2.4e-30 136.0 148 55.4
THA.LOC104819560 Tarenaya hassleriana HOM05D000049 ORTHO05D008785 2.4e-30 136.0 150 55.3
ECA240G2980 Erigeron canadensis HOM05D000049 ORTHO05D000027 3.1e-30 135.6 147 54.4
Dinv42184 Davidia involucrata HOM05D000049 ORTHO05D008785 4.1e-30 135.2 137 60.6
Migut.B00381 Erythranthe guttata HOM05D000049 ORTHO05D008785 7.0e-30 134.4 123 59.3
Sed0018040 Sechium edule HOM05D000049 ORTHO05D008785 7.0e-30 134.4 147 55.8
PGR042G1228 Punica granatum HOM05D000049 ORTHO05D008785 9.1e-30 134.0 147 55.1
CSS0023695 Camellia sinensis var. sinensis HOM05D000049 ORTHO05D008785 1.2e-29 133.7 103 71.8
Carub.0007s0619 Capsella rubella HOM05D000049 ORTHO05D008785 1.6e-29 133.3 150 54.0
CARHR242610 Cardamine hirsuta HOM05D000049 ORTHO05D008785 1.6e-29 133.3 150 54.0
Nitab4.5_0002815g0100 Nicotiana tabacum HOM05D000049 ORTHO05D008785 1.6e-29 133.3 147 57.1
Thhalv10026482m.g Eutrema salsugineum HOM05D000049 ORTHO05D008785 2.0e-29 132.9 153 54.2
TWI31G0015 Tripterygium wilfordii HOM05D000049 ORTHO05D008785 4.5e-29 131.7 146 56.8
AL7G17120 Arabidopsis lyrata HOM05D000049 ORTHO05D008785 7.7e-29 131.0 147 55.1
Aa31LG2G16660 Aethionema arabicum HOM05D000049 ORTHO05D008785 1.3e-28 130.2 150 54.0
MSTRG.5347 Avicennia marina HOM05D000049 ORTHO05D008785 2.2e-28 129.4 103 63.1
A01p04250 Brassica napus HOM05D000049 ORTHO05D008785 2.9e-28 129.0 152 53.3
BraA01t00414Z Brassica rapa HOM05D000049 ORTHO05D008785 2.9e-28 129.0 152 53.3
C01p04640 Brassica napus HOM05D000049 ORTHO05D008785 3.8e-28 128.6 152 53.3
BolC1t00447H Brassica oleracea HOM05D000049 ORTHO05D008785 3.8e-28 128.6 152 53.3
Actinidia27967 Actinidia chinensis HOM05D000049 ORTHO05D008785 6.5e-28 127.9 152 53.3
PSO210G6109 Papaver somniferum HOM05D000049 ORTHO05D008785 6.5e-28 127.9 147 54.4
HPP92_004768 Vanilla planifolia HOM05D000049 ORTHO05D008785 6.5e-28 127.9 110 60.9
BcaNung03801 Brassica carinata HOM05D000049 ORTHO05D008785 8.5e-28 127.5 152 53.3
Sp7g31960 Schrenkiella parvula HOM05D000049 ORTHO05D008785 8.5e-28 127.5 149 53.0
DCAR_030806 Daucus carota HOM05D000049 ORTHO05D008785 1.5e-27 126.7 90 68.9
FAN15G1433 Fragaria x ananassa HOM05D000049 ORTHO05D008785 1.9e-27 126.3 133 54.9
unitig_22.g6845 Utricularia gibba HOM05D000049 ORTHO05D008785 2.5e-27 125.9 82 75.6
Nitab4.5_0005392g0020 Nicotiana tabacum HOM05D000049 ORTHO05D008785 3.2e-27 125.6 148 54.1
CSS0024818 Camellia sinensis var. sinensis HOM05D000049 ORTHO05D008785 4.2e-27 125.2 131 58.8
FAN24G0707 Fragaria x ananassa HOM05D000049 ORTHO05D008785 7.2e-27 124.4 132 54.5
CSS0021501 Camellia sinensis var. sinensis HOM05D000049 ORTHO05D008785 1.6e-26 123.2 131 57.3
PSO170G1282 Papaver somniferum HOM05D000049 ORTHO05D008785 2.7e-26 122.5 152 53.3
THA.LOC104807247 Tarenaya hassleriana HOM05D000049 ORTHO05D008785 2.6e-24 115.9 150 49.3
SEGI_21574 Sequoiadendron giganteum HOM05D000049 ORTHO05D008785 8.3e-23 110.9 77 67.5
MELO3C018482.2 Cucumis melo HOM05D000049 ORTHO05D000027 5.9e-21 104.8 77 72.7
Hund00143 Selenicereus undatus HOM05D000049 ORTHO05D008785 3.8e-20 102.1 95 56.8
Dinv15757 Davidia involucrata HOM05D000049 ORTHO05D008785 1.1e-19 100.5 121 51.2
Zm00001eb048670 Zea mays HOM05D000049 ORTHO05D008785 1.1e-19 100.5 97 53.6
TAR376G0829 Trochodendron aralioides HOM05D000049 ORTHO05D008785 5.5e-19 98.2 136 47.1
Sabra09G0074400 Salix brachista HOM05D000049 ORTHO05D008785 1.6e-18 96.7 132 46.2
vmacro19520 Vaccinium macrocarpon HOM05D000049 ORTHO05D008785 2.8e-18 95.9 120 51.7
Mapoly0006s0145 Marchantia polymorpha HOM05D000049 ORTHO05D008785 5.7e-16 88.2 108 49.1
Pp3c1_21810 Physcomitrium patens HOM05D000049 ORTHO05D008785 3.7e-15 85.5 120 43.3
Os11g0621400 Oryza sativa ssp. japonica HOM05D000049 ORTHO05D008785 1.8e-14 83.2 86 47.7
ATR0691G295 Amborella trichopoda HOM05D000049 ORTHO05D008785 1.2e-13 80.5 55 76.4
FAN27G0752 Fragaria x ananassa HOM05D000049 ORTHO05D000027 3.5e-13 79.0 111 45.0
AagrBONN_evm.TU.Sc2ySwM_117.2783 Anthoceros agrestis HOM05D000049 ORTHO05D008785 2.9e-12 75.9 82 47.6
SMO340G0196 Selaginella moellendorffii HOM05D000049 ORTHO05D008785 1.5e-11 73.6 76 48.7
SalBow6G4602 Salvia bowleyana HOM05D010989 ORTHO05D013112 4.3e-11 72.0 115 47.0
TAR628G1275 Trochodendron aralioides HOM05D000049 ORTHO05D008785 4.3e-11 72.0 61 60.7
Os10g0395200 Oryza sativa ssp. japonica HOM05D000049 ORTHO05D008785 8.3e-07 57.8 68 47.1
COL.COLO4_15744 Corchorus olitorius HOM05D001416 ORTHO05D002549 1.4e-06 57.0 32 81.2


User provided reference genes

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