Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G13849 Trifolium pratense HOM05D000018 ORTHO05D000453 3.8e-34 147.5 71 100.0
TPR.G23397 Trifolium pratense HOM05D000018 ORTHO05D000453 4.6e-27 124.0 64 92.2
TPR.G20085 Trifolium pratense HOM05D000018 ORTHO05D000453 3.9e-26 120.9 66 87.9
TPR.G23003 Trifolium pratense HOM05D000018 ORTHO05D000453 3.9e-26 120.9 64 90.6
TPR.G27111 Trifolium pratense HOM05D000018 ORTHO05D000453 8.6e-26 119.8 66 87.9
Psat3g203600 Pisum sativum HOM05D000018 ORTHO05D000453 2.5e-25 118.2 64 85.9
Ca_06836_v3 Cicer arietinum L. HOM05D000018 ORTHO05D000453 1.8e-23 112.1 64 81.2
Glyma.18G273200 Glycine max HOM05D000018 ORTHO05D000453 9.8e-22 106.3 64 76.6
Lj1g0016237 Lotus japonicus HOM05D000018 ORTHO05D000453 1.3e-21 105.9 64 75.0
Lj1g0018607 Lotus japonicus HOM05D000018 ORTHO05D000453 2.9e-21 104.8 62 79.0
VMungo1383G1295 Vigna mungo HOM05D000018 ORTHO05D000453 1.1e-20 102.8 64 73.4
arahy.Tifrunner.gnm1.ann1.7S0877 Arachis hypogaea HOM05D000018 ORTHO05D000453 7.0e-20 100.1 64 71.9
arahy.Tifrunner.gnm1.ann1.I8IDBT Arachis hypogaea HOM05D000018 ORTHO05D000453 7.8e-19 96.7 64 68.8
Glyma.19G034000 Glycine max HOM05D000018 ORTHO05D000453 7.8e-19 96.7 64 70.3
TPR.G13848 Trifolium pratense HOM05D000018 ORTHO05D000453 7.8e-19 96.7 48 93.8
Glyma.13G052800 Glycine max HOM05D000018 ORTHO05D000453 1.0e-18 96.3 64 68.8
TPR.G13844 Trifolium pratense HOM05D000018 ORTHO05D000453 1.7e-18 95.5 48 91.7
Ca_14393_v3 Cicer arietinum L. HOM05D000018 ORTHO05D000453 2.5e-17 91.7 65 66.2
arahy.Tifrunner.gnm1.ann1.J0AE6B Arachis hypogaea HOM05D000018 ORTHO05D000453 5.6e-17 90.5 64 62.5
VMungo0464G0959 Vigna mungo HOM05D000018 ORTHO05D000453 1.2e-16 89.4 64 62.5
TPR.G15929 Trifolium pratense HOM05D000018 ORTHO05D000453 2.1e-16 88.6 65 67.7
Medtr7g016090 Medicago truncatula HOM05D000018 ORTHO05D000453 2.8e-16 88.2 64 65.6
QL09p038391 Quercus lobata HOM05D000018 ORTHO05D000453 4.7e-16 87.4 64 67.2
Lj2g0027597 Lotus japonicus HOM05D000018 ORTHO05D000453 6.2e-16 87.0 64 62.5
Medtr7g016080 Medicago truncatula HOM05D000018 ORTHO05D000453 6.2e-16 87.0 64 65.6
Ca_06834_v3 Cicer arietinum L. HOM05D000018 ORTHO05D000453 1.4e-15 85.9 64 62.5
Phvul.004G041800 Phaseolus vulgaris HOM05D000018 ORTHO05D000453 2.3e-15 85.1 64 59.4
TPR.G34420 Trifolium pratense HOM05D000018 ORTHO05D000453 2.3e-15 85.1 64 60.9
TPR.G39075 Trifolium pratense HOM05D000100 ORTHO05D000052 2.3e-15 85.1 64 60.9
VMungo1383G3637 Vigna mungo HOM05D000018 ORTHO05D000453 2.3e-15 85.1 64 60.9
MD05G1199300 Malus domestica HOM05D000018 ORTHO05D000453 4.0e-15 84.3 64 62.5
Lj1g0017286 Lotus japonicus HOM05D000018 ORTHO05D000453 8.9e-15 83.2 64 57.8
Medtr6g015950 Medicago truncatula HOM05D000018 ORTHO05D000453 8.9e-15 83.2 65 61.5
Phvul.008G028100 Phaseolus vulgaris HOM05D000018 ORTHO05D000453 1.2e-14 82.8 54 70.4
Psat1g065640 Pisum sativum HOM05D000018 ORTHO05D000453 1.5e-14 82.4 65 60.0
Duzib138G0622 Durio zibethinus HOM05D000018 ORTHO05D000453 2.6e-14 81.6 64 59.4
Lalb_Chr17g0336831 Lupinus albus HOM05D000018 ORTHO05D000453 2.6e-14 81.6 63 60.3
Atru.chr5.1652 Acer truncatum HOM05D000018 ORTHO05D000453 9.9e-14 79.7 64 60.9
Thecc.01G260000 Theobroma cacao HOM05D000018 ORTHO05D000453 1.3e-13 79.3 64 57.8
FvH4_2g21690 Fragaria vesca HOM05D000018 ORTHO05D000453 1.7e-13 79.0 64 57.8
FAN15G0335 Fragaria x ananassa HOM05D000018 ORTHO05D000453 1.7e-13 79.0 64 57.8
FAN24G0807 Fragaria x ananassa HOM05D000018 ORTHO05D000453 1.7e-13 79.0 64 57.8
Gohir.D11G135900 Gossypium hirsutum HOM05D000018 ORTHO05D000453 1.7e-13 79.0 64 57.8
Psat3g203640 Pisum sativum HOM05D000018 ORTHO05D000453 2.2e-13 78.6 64 59.4
Duzib133G0369 Durio zibethinus HOM05D000018 ORTHO05D000453 2.9e-13 78.2 64 57.8
Prupe.8G225100 Prunus persica HOM05D000018 ORTHO05D000453 3.7e-13 77.8 64 57.8
CiPaw.03G262800 Carya illinoinensis HOM05D000018 ORTHO05D000453 6.4e-13 77.0 64 57.8
FAN27G2542 Fragaria x ananassa HOM05D000018 ORTHO05D000453 8.3e-13 76.6 64 56.2
Gorai.007G145500 Gossypium raimondii HOM05D000018 ORTHO05D000453 8.3e-13 76.6 64 56.2
RcHm_v2.0_Chr6g0288371 Rosa chinensis HOM05D000018 ORTHO05D000453 1.1e-12 76.3 64 56.2
CsaV3_7G027450 Cucumis sativus L. HOM05D000018 ORTHO05D000453 4.1e-12 74.3 62 58.1
Gohir.A11G130200 Gossypium hirsutum HOM05D000018 ORTHO05D000453 4.1e-12 74.3 64 54.7
MD10G1185400 Malus domestica HOM05D000018 ORTHO05D000453 4.1e-12 74.3 64 56.2
TPR.G23407 Trifolium pratense HOM05D000018 ORTHO05D000453 5.4e-12 73.9 57 63.2
COL.COLO4_05176 Corchorus olitorius HOM05D000018 ORTHO05D000453 7.1e-12 73.6 64 54.7
MELO3C015746.2 Cucumis melo HOM05D000018 ORTHO05D000453 1.2e-11 72.8 62 59.7
ClCG09G007690 Citrullus lanatus HOM05D000018 ORTHO05D000453 3.5e-11 71.2 62 58.1
QL09p040858 Quercus lobata HOM05D000018 ORTHO05D000453 4.6e-11 70.9 64 54.7
CSS0028732 Camellia sinensis var. sinensis HOM05D000018 ORTHO05D000453 7.8e-11 70.1 64 51.6
CiPaw.04G186000 Carya illinoinensis HOM05D000018 ORTHO05D000453 7.8e-11 70.1 63 52.4
Sed0013877 Sechium edule HOM05D000018 ORTHO05D000453 1.0e-10 69.7 62 56.5
QL09p040635 Quercus lobata HOM05D000018 ORTHO05D000453 1.7e-10 68.9 64 51.6
Lj2A1153T48 Lonicera japonica HOM05D000018 ORTHO05D000453 3.9e-10 67.8 64 54.7
Dinv34614 Davidia involucrata HOM05D000018 ORTHO05D000453 5.1e-10 67.4 63 52.4
CANSAT01G1181 Cannabis sativa HOM05D000018 ORTHO05D000453 6.6e-10 67.0 67 49.3
QL09p040786 Quercus lobata HOM05D000018 ORTHO05D000453 6.6e-10 67.0 64 50.0
Peaxi162Scf00134g00613 Petunia axillaris HOM05D000018 ORTHO05D000453 8.6e-10 66.6 64 53.1
QL09p040592 Quercus lobata HOM05D000018 ORTHO05D000453 8.6e-10 66.6 64 51.6
QL09p040708 Quercus lobata HOM05D000018 ORTHO05D000453 1.1e-09 66.2 64 48.4
Actinidia09557 Actinidia chinensis HOM05D000018 ORTHO05D000453 1.5e-09 65.9 67 47.8
CSS0024723 Camellia sinensis var. sinensis HOM05D000018 ORTHO05D000453 1.5e-09 65.9 67 49.3
CSS0028530 Camellia sinensis var. sinensis HOM05D000018 ORTHO05D000453 1.5e-09 65.9 67 50.7
QL09p040612 Quercus lobata HOM05D000018 ORTHO05D000453 1.9e-09 65.5 64 50.0
HanXRQChr10g0281031 Helianthus annuus HOM05D000018 ORTHO05D000453 5.6e-09 63.9 64 54.7
HanXRQChr11g0336741 Helianthus annuus HOM05D000018 ORTHO05D000453 5.6e-09 63.9 64 53.1
QL09p040740 Quercus lobata HOM05D000018 ORTHO05D000453 5.6e-09 63.9 64 48.4
QL09p040832 Quercus lobata HOM05D000018 ORTHO05D000453 5.6e-09 63.9 64 48.4
CsaV3_7G027410 Cucumis sativus L. HOM05D000018 ORTHO05D000453 7.3e-09 63.5 62 50.0
MD10G1185500 Malus domestica HOM05D000018 ORTHO05D000453 7.3e-09 63.5 48 62.5
ClCG09G007740 Citrullus lanatus HOM05D000018 ORTHO05D000453 1.2e-08 62.8 62 48.4
CAN.G771.24 Capsicum annuum HOM05D000018 ORTHO05D000453 2.1e-08 62.0 64 45.3
CsaV3_7G027400 Cucumis sativus L. HOM05D000018 ORTHO05D000453 2.1e-08 62.0 61 50.8
FvH4_2g11330 Fragaria vesca HOM05D000018 ORTHO05D000453 2.1e-08 62.0 64 45.3
FAN24G1881 Fragaria x ananassa HOM05D000018 ORTHO05D000453 2.1e-08 62.0 64 45.3
Solyc06g083910.3 Solanum lycopersicum HOM05D000018 ORTHO05D000453 2.1e-08 62.0 64 46.9
vmacro14837 Vaccinium macrocarpon HOM05D000018 ORTHO05D000453 2.1e-08 62.0 67 44.8
Lsat_1_v5_gn_5_182240 Lactuca sativa HOM05D000018 ORTHO05D000453 2.8e-08 61.6 65 53.8
PGSC0003DMG400016213 Solanum tuberosum HOM05D000018 ORTHO05D000453 2.8e-08 61.6 64 48.4
QL09p038383 Quercus lobata HOM05D000018 ORTHO05D000453 3.6e-08 61.2 64 46.9
RcHm_v2.0_Chr4g0407601 Rosa chinensis HOM05D000018 ORTHO05D000453 3.6e-08 61.2 64 45.3
Sc24g0003120 Simmondsia chinensis HOM05D000018 ORTHO05D000453 3.6e-08 61.2 64 45.3
PGSC0003DMG400020070 Solanum tuberosum HOM05D000018 ORTHO05D000453 3.6e-08 61.2 64 46.9
Potri.002G039500 Populus trichocarpa HOM05D000018 ORTHO05D000453 4.7e-08 60.8 64 48.4
QL09p040576 Quercus lobata HOM05D000018 ORTHO05D000453 4.7e-08 60.8 47 61.7
Haze_24614 Corylus avellana HOM05D000018 ORTHO05D000453 6.2e-08 60.5 47 59.6
vmacro02655 Vaccinium macrocarpon HOM05D000018 ORTHO05D000453 6.2e-08 60.5 64 46.9
CSS0003417 Camellia sinensis var. sinensis HOM05D000018 ORTHO05D000453 1.1e-07 59.7 62 46.8
ECA236G4530 Erigeron canadensis HOM05D000018 ORTHO05D000453 1.1e-07 59.7 64 45.3
PGSC0003DMG400009715 Solanum tuberosum HOM05D000018 ORTHO05D000453 1.1e-07 59.7 62 51.6
FAN15G0907 Fragaria x ananassa HOM05D000018 ORTHO05D000453 1.8e-07 58.9 64 43.8
HanXRQChr10g0281021 Helianthus annuus HOM05D000018 ORTHO05D000453 1.8e-07 58.9 64 48.4
PGSC0003DMG400021180 Solanum tuberosum HOM05D000018 ORTHO05D000453 1.8e-07 58.9 64 45.3
vmacro14836 Vaccinium macrocarpon HOM05D000018 ORTHO05D000453 1.8e-07 58.9 67 43.3
Actinidia17179 Actinidia chinensis HOM05D000018 ORTHO05D000453 2.4e-07 58.5 71 46.5
DCAR_012540 Daucus carota HOM05D000018 ORTHO05D000453 2.4e-07 58.5 67 47.8
Gohir.D08G208200 Gossypium hirsutum HOM05D000018 ORTHO05D000453 2.4e-07 58.5 64 45.3
Gorai.004G220600 Gossypium raimondii HOM05D000018 ORTHO05D000453 2.4e-07 58.5 64 45.3
Lj1A65T52 Lonicera japonica HOM05D000018 ORTHO05D000453 2.4e-07 58.5 64 46.9
Nitab4.5_0005846g0010 Nicotiana tabacum HOM05D000018 ORTHO05D000453 2.4e-07 58.5 62 51.6
Solyc11g010400.3 Solanum lycopersicum HOM05D000018 ORTHO05D000453 2.4e-07 58.5 64 43.8
MELO3C015743.2 Cucumis melo HOM05D000018 ORTHO05D000453 3.1e-07 58.2 66 50.0
Gohir.A08G189700 Gossypium hirsutum HOM05D000018 ORTHO05D000453 3.1e-07 58.2 64 43.8
Lj5g0001478 Lotus japonicus HOM05D000018 ORTHO05D000453 3.1e-07 58.2 64 43.8
Oeu039683.1 Olea europaea HOM05D000018 ORTHO05D000453 3.1e-07 58.2 64 46.9
Sed0017495 Sechium edule HOM05D000018 ORTHO05D000453 3.1e-07 58.2 68 44.1
Sed0026239 Sechium edule HOM05D000018 ORTHO05D000453 3.1e-07 58.2 60 48.3
Sc24g0003110 Simmondsia chinensis HOM05D000018 ORTHO05D000453 3.1e-07 58.2 64 42.2
Sopen06g035310 Solanum pennellii HOM05D000018 ORTHO05D000453 3.1e-07 58.2 64 45.3
vmacro14839 Vaccinium macrocarpon HOM05D000018 ORTHO05D000453 3.1e-07 58.2 64 45.3
Ciclev10024242m.g Citrus clementina HOM05D000018 ORTHO05D000453 5.2e-07 57.4 64 45.3
COL.COLO4_05177 Corchorus olitorius HOM05D000018 ORTHO05D000453 5.2e-07 57.4 64 45.3
Gohir.A08G059900 Gossypium hirsutum HOM05D000018 ORTHO05D000453 5.2e-07 57.4 64 43.8
Gohir.D08G069100 Gossypium hirsutum HOM05D000018 ORTHO05D000453 5.2e-07 57.4 64 43.8
Gorai.004G072700 Gossypium raimondii HOM05D000018 ORTHO05D000453 5.2e-07 57.4 64 43.8
Hma1.2p1_0273F.1_g109810 Hydrangea macrophylla HOM05D000018 ORTHO05D000453 5.2e-07 57.4 64 43.8
Sopen11g005180 Solanum pennellii HOM05D000018 ORTHO05D000453 5.2e-07 57.4 64 43.8
CsaV3_7G027420 Cucumis sativus L. HOM05D000018 ORTHO05D000453 6.8e-07 57.0 66 47.0
Nitab4.5_0000086g0030 Nicotiana tabacum HOM05D000018 ORTHO05D000453 6.8e-07 57.0 62 50.0
Nitab4.5_0006778g0010 Nicotiana tabacum HOM05D000018 ORTHO05D000453 6.8e-07 57.0 64 43.8
GSVIVG01028307001 Vitis vinifera HOM05D000018 ORTHO05D000453 6.8e-07 57.0 64 46.9
Gohir.A07G212000 Gossypium hirsutum HOM05D000018 ORTHO05D000453 8.9e-07 56.6 64 43.8
Gohir.A08G189532 Gossypium hirsutum HOM05D000018 ORTHO05D000453 8.9e-07 56.6 64 43.8
Gohir.D07G218100 Gossypium hirsutum HOM05D000018 ORTHO05D000453 8.9e-07 56.6 64 43.8
Ah.13g076330 Amaranthus hybridus HOM05D003344 ORTHO05D003981 1.2e-06 56.2 63 46.0
Duzib133G1473 Durio zibethinus HOM05D000018 ORTHO05D000453 1.2e-06 56.2 64 42.2
Gohir.A08G189516 Gossypium hirsutum HOM05D000018 ORTHO05D000453 1.2e-06 56.2 64 43.8
Lj1A65T53 Lonicera japonica HOM05D000018 ORTHO05D000453 1.2e-06 56.2 67 46.3
Peaxi162Scf00419g00078 Petunia axillaris HOM05D000018 ORTHO05D000453 1.2e-06 56.2 64 43.8
Potri.002G039600 Populus trichocarpa HOM05D000018 ORTHO05D000453 1.2e-06 56.2 64 45.3
AUR62024723 Chenopodium quinoa HOM05D000931 ORTHO05D002226 1.5e-06 55.8 64 45.3
Cc01_g18410 Coffea canephora HOM05D000018 ORTHO05D000453 1.5e-06 55.8 63 46.0
Lsat_1_v5_gn_8_91121 Lactuca sativa HOM05D000018 ORTHO05D000453 1.5e-06 55.8 67 41.8
Sabra02G0031800 Salix brachista HOM05D000018 ORTHO05D000453 1.5e-06 55.8 64 43.8
Sed0014918 Sechium edule HOM05D000018 ORTHO05D000453 1.5e-06 55.8 60 45.0
Sed0018418 Sechium edule HOM05D000018 ORTHO05D000453 1.5e-06 55.8 60 45.0
Gorai.004G220500 Gossypium raimondii HOM05D000018 ORTHO05D000453 2.0e-06 55.5 62 43.5
Solyc11g010410.2 Solanum lycopersicum HOM05D000018 ORTHO05D000453 2.6e-06 55.1 67 44.8
EL10Ac5g10409 Beta vulgaris HOM05D000018 ORTHO05D000453 3.4e-06 54.7 64 43.8
Eucgr.B01535 Eucalyptus grandis HOM05D000018 ORTHO05D000453 3.4e-06 54.7 62 43.5
Gohir.D08G208100 Gossypium hirsutum HOM05D000018 ORTHO05D000453 3.4e-06 54.7 62 43.5
MD05G1199100 Malus domestica HOM05D000018 ORTHO05D000453 3.4e-06 54.7 64 42.2
Prupe.8G224200 Prunus persica HOM05D000018 ORTHO05D000453 3.4e-06 54.7 64 42.2
TPR.G23374 Trifolium pratense HOM05D000018 ORTHO05D000453 3.4e-06 54.7 35 71.4
COL.COLO4_00002 Corchorus olitorius HOM05D000018 ORTHO05D000453 4.4e-06 54.3 67 38.8
Migut.N02197 Erythranthe guttata HOM05D000018 ORTHO05D000453 4.4e-06 54.3 67 43.3
Gorai.001G252300 Gossypium raimondii HOM05D000018 ORTHO05D000453 4.4e-06 54.3 64 42.2
MD05G1201900 Malus domestica HOM05D000018 ORTHO05D000453 4.4e-06 54.3 64 40.6
Manes.12G031600 Manihot esculenta HOM05D000018 ORTHO05D000453 4.4e-06 54.3 64 40.6
Sabra01G0113600 Salix brachista HOM05D000018 ORTHO05D000453 4.4e-06 54.3 64 45.3
arahy.Tifrunner.gnm1.ann1.0T426R Arachis hypogaea HOM05D000018 ORTHO05D000453 5.8e-06 53.9 59 42.4
EL10Ac5g10414 Beta vulgaris HOM05D000018 ORTHO05D000453 5.8e-06 53.9 68 45.6
CAN.G1388.2 Capsicum annuum HOM05D000018 ORTHO05D000453 5.8e-06 53.9 65 41.5
ECA238G3877 Erigeron canadensis HOM05D000018 ORTHO05D000453 5.8e-06 53.9 67 41.8
Duzib211G0216 Durio zibethinus HOM05D000018 ORTHO05D000453 7.6e-06 53.5 64 43.8
HanXRQChr04g0113241 Helianthus annuus HOM05D000018 ORTHO05D000453 7.6e-06 53.5 64 40.6
MD10G1188700 Malus domestica HOM05D000018 ORTHO05D000453 7.6e-06 53.5 64 40.6
Thecc.01G259900 Theobroma cacao HOM05D000018 ORTHO05D000453 7.6e-06 53.5 64 40.6


User provided reference genes

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