Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G13833 Trifolium pratense HOM05D005298 ORTHO05D037798 1.6e-39 165.6 83 100.0
Ca_21388_v3 Cicer arietinum L. HOM05D005298 ORTHO05D008015 9.8e-13 76.6 61 62.3
TPR.G12648 Trifolium pratense HOM05D005298 ORTHO05D008015 9.8e-13 76.6 61 62.3
TPR.G40673 Trifolium pratense HOM05D005298 ORTHO05D037798 9.8e-13 76.6 88 48.9
Medtr4g123690 Medicago truncatula HOM05D005298 ORTHO05D008015 3.1e-11 71.6 61 59.0
VMungo1215G2609 Vigna mungo HOM05D005298 ORTHO05D008015 7.0e-11 70.5 70 52.9
Psat0ss1196g0600 Pisum sativum HOM05D005298 ORTHO05D008015 9.1e-11 70.1 61 60.7
Phvul.003G119400 Phaseolus vulgaris HOM05D005298 ORTHO05D008015 1.2e-10 69.7 61 54.1
arahy.Tifrunner.gnm1.ann1.68EF5E Arachis hypogaea HOM05D005298 ORTHO05D008015 5.9e-10 67.4 61 52.5
arahy.Tifrunner.gnm1.ann1.WSVI3W Arachis hypogaea HOM05D005298 ORTHO05D008015 5.9e-10 67.4 61 52.5
Haze_00801 Corylus avellana HOM05D005298 ORTHO05D008015 7.7e-10 67.0 61 50.8
Glyma.17G038500 Glycine max HOM05D005298 ORTHO05D008015 7.7e-10 67.0 61 50.8
Glyma.07G233500 Glycine max HOM05D005298 ORTHO05D008015 1.7e-09 65.9 61 49.2
Lj4g0022536 Lotus japonicus HOM05D005298 ORTHO05D008015 1.7e-09 65.9 52 61.5
Lalb_Chr07g0181831 Lupinus albus HOM05D005298 ORTHO05D008015 2.2e-09 65.5 61 47.5
Cfa015712 Carpinus fangiana HOM05D005298 ORTHO05D008015 3.8e-09 64.7 61 49.2
CiPaw.01G131300 Carya illinoinensis HOM05D005298 ORTHO05D008015 8.5e-09 63.5 62 53.2
FAN07G1807 Fragaria x ananassa HOM05D005298 ORTHO05D008015 8.5e-09 63.5 62 51.6
RcHm_v2.0_Chr4g0426661 Rosa chinensis HOM05D005298 ORTHO05D008015 8.5e-09 63.5 62 51.6
FAN17G0175 Fragaria x ananassa HOM05D005298 ORTHO05D008015 1.1e-08 63.2 62 50.0
FvH4_4g20840 Fragaria vesca HOM05D005298 ORTHO05D008015 5.5e-08 60.8 52 55.8
Manes.15G003700 Manihot esculenta HOM05D005298 ORTHO05D008015 5.5e-08 60.8 62 48.4
MD16G1139700 Malus domestica HOM05D005298 ORTHO05D008015 7.2e-08 60.5 52 55.8
Potri.010G152700 Populus trichocarpa HOM05D005298 ORTHO05D008015 7.2e-08 60.5 62 51.6
Sabra10G0117500 Salix brachista HOM05D005298 ORTHO05D008015 7.2e-08 60.5 62 51.6
COL.COLO4_34539 Corchorus olitorius HOM05D005298 ORTHO05D008015 9.4e-08 60.1 52 55.8
Eucgr.H04107 Eucalyptus grandis HOM05D005298 ORTHO05D008015 1.2e-07 59.7 52 53.8
Atru.chr4.3122 Acer truncatum HOM05D005298 ORTHO05D008015 1.6e-07 59.3 62 46.8
Cpa.g.sc146.46 Carica papaya HOM05D005298 ORTHO05D008015 1.6e-07 59.3 52 53.8
FvH4_4g21110 Fragaria vesca HOM05D005298 ORTHO05D008015 1.6e-07 59.3 62 48.4
Prupe.1G109100 Prunus persica HOM05D005298 ORTHO05D008015 1.6e-07 59.3 52 55.8
QL06p013696 Quercus lobata HOM05D005298 ORTHO05D008015 2.7e-07 58.5 52 55.8
TAR362G0426 Trochodendron aralioides HOM05D005298 ORTHO05D008015 3.6e-07 58.2 62 51.6
Carub.0003s1705 Capsella rubella HOM05D005298 ORTHO05D008015 6.1e-07 57.4 71 45.1
Ciclev10004217m.g Citrus clementina HOM05D005298 ORTHO05D008015 6.1e-07 57.4 52 55.8
Thecc.04G309800 Theobroma cacao HOM05D005298 ORTHO05D008015 1.0e-06 56.6 62 50.0
Nn3g21868 Nelumbo nucifera HOM05D005298 ORTHO05D008015 1.4e-06 56.2 62 46.8
CSS0004853 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 1.8e-06 55.8 61 49.2
CSS0017624 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 1.8e-06 55.8 61 49.2
CAN.G14.34 Capsicum annuum HOM05D005298 ORTHO05D008015 1.8e-06 55.8 66 40.9
AL3G30390 Arabidopsis lyrata HOM05D005298 ORTHO05D008015 2.3e-06 55.5 56 48.2
CsaV3_6G000130 Cucumis sativus L. HOM05D005298 ORTHO05D008015 2.3e-06 55.5 70 45.7
DCAR_002539 Daucus carota HOM05D005298 ORTHO05D008015 2.3e-06 55.5 61 50.8
Thhalv10019950m.g Eutrema salsugineum HOM05D005298 ORTHO05D008015 2.3e-06 55.5 56 48.2
Sp3g15510 Schrenkiella parvula HOM05D005298 ORTHO05D008015 2.3e-06 55.5 56 48.2
ClCG06G004280 Citrullus lanatus HOM05D005298 ORTHO05D008015 4.0e-06 54.7 70 44.3
Gohir.A02G057201 Gossypium hirsutum HOM05D005298 ORTHO05D008015 4.0e-06 54.7 52 53.8
AT3G17340 Arabidopsis thaliana HOM05D005298 ORTHO05D008015 5.2e-06 54.3 56 48.2
Gohir.D02G063000 Gossypium hirsutum HOM05D005298 ORTHO05D008015 5.2e-06 54.3 52 53.8
Gorai.005G070900 Gossypium raimondii HOM05D005298 ORTHO05D008015 6.8e-06 53.9 52 53.8
PGR004G2663 Punica granatum HOM05D005298 ORTHO05D008015 6.8e-06 53.9 52 55.8
Actinidia18497 Actinidia chinensis HOM05D005298 ORTHO05D008015 8.8e-06 53.5 61 49.2
Dinv29532 Davidia involucrata HOM05D005298 ORTHO05D008015 8.8e-06 53.5 52 53.8
TWI09G0537 Tripterygium wilfordii HOM05D005298 ORTHO05D008015 8.8e-06 53.5 43 55.8


User provided reference genes

Program Settings