Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G13761 Trifolium pratense HOM05D004218 ORTHO05D004938 0.0e+00 1330.5 669 100.0
Aa31LG7G8130 Aethionema arabicum HOM05D004218 ORTHO05D004938 1.0e-216 757.3 657 58.9
Medtr5g038460 Medicago truncatula HOM05D004218 ORTHO05D004938 2.6e-180 636.3 367 89.1
Ca_04743_v3 Cicer arietinum L. HOM05D004218 ORTHO05D004938 5.9e-169 598.6 367 84.5
Psat0s3244g0040 Pisum sativum HOM05D004218 ORTHO05D004938 1.6e-161 573.9 369 81.3
Lj2g0000105 Lotus japonicus HOM05D004218 ORTHO05D004938 7.3e-159 565.1 365 79.7
Glyma.02G021600 Glycine max HOM05D004218 ORTHO05D004938 2.8e-158 563.1 373 79.4
Phvul.002G066300 Phaseolus vulgaris HOM05D004218 ORTHO05D004938 4.7e-158 562.4 362 80.1
Lalb_Chr17g0340391 Lupinus albus HOM05D004218 ORTHO05D004938 6.2e-158 562.0 366 80.1
VMungo1215G2729 Vigna mungo HOM05D004218 ORTHO05D004938 4.1e-154 549.3 366 79.2
arahy.Tifrunner.gnm1.ann1.08CHDU Arachis hypogaea HOM05D004218 ORTHO05D004938 1.5e-140 504.2 375 72.5
arahy.Tifrunner.gnm1.ann1.VAP5EU Arachis hypogaea HOM05D004218 ORTHO05D004938 2.6e-140 503.4 376 73.1
Cfa009032 Carpinus fangiana HOM05D004218 ORTHO05D004938 4.9e-139 499.2 355 71.5
CSS0011407 Camellia sinensis var. sinensis HOM05D004218 ORTHO05D004938 1.4e-138 497.7 349 71.9
Duzib248G0205 Durio zibethinus HOM05D004218 ORTHO05D004938 7.1e-138 495.4 296 80.4
Thecc.02G354900 Theobroma cacao HOM05D004218 ORTHO05D004938 7.1e-138 495.4 357 70.6
Lj6A794T99 Lonicera japonica HOM05D004218 ORTHO05D004938 2.7e-137 493.4 362 69.6
RcHm_v2.0_Chr4g0440591 Rosa chinensis HOM05D004218 ORTHO05D004938 3.5e-137 493.0 373 68.9
Nn3g17132 Nelumbo nucifera HOM05D004218 ORTHO05D004938 4.6e-137 492.7 349 70.8
Prupe.1G268000 Prunus persica HOM05D004218 ORTHO05D004938 4.6e-137 492.7 321 75.4
Hma1.2p1_1545F.1_g289920 Hydrangea macrophylla HOM05D004218 ORTHO05D004938 1.0e-136 491.5 374 68.7
QL03p065637 Quercus lobata HOM05D004218 ORTHO05D004938 1.0e-136 491.5 361 70.4
Dinv34202 Davidia involucrata HOM05D004218 ORTHO05D004938 1.7e-136 490.7 296 79.1
FAN22G1204 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.7e-136 490.7 373 67.8
Ciclev10031724m.g Citrus clementina HOM05D004218 ORTHO05D004938 3.0e-136 490.0 344 71.2
GSVIVG01020072001 Vitis vinifera HOM05D004218 ORTHO05D004938 3.0e-136 490.0 365 67.9
ClCG08G009010 Citrullus lanatus HOM05D004218 ORTHO05D004938 8.7e-136 488.4 646 45.0
COL.COLO4_07925 Corchorus olitorius HOM05D004218 ORTHO05D004938 1.5e-135 487.6 334 72.5
FAN17G0090 Fragaria x ananassa HOM05D004218 ORTHO05D004938 9.6e-135 485.0 299 78.3
Actinidia31179 Actinidia chinensis HOM05D004218 ORTHO05D004938 2.1e-134 483.8 358 69.0
Eucgr.G02550 Eucalyptus grandis HOM05D004218 ORTHO05D004938 3.6e-134 483.0 316 74.7
PGR119G2468 Punica granatum HOM05D004218 ORTHO05D004938 3.6e-134 483.0 328 73.2
FAN12G1121 Fragaria x ananassa HOM05D004218 ORTHO05D004938 3.1e-133 479.9 380 65.8
MD16G1078500 Malus domestica HOM05D004218 ORTHO05D004938 3.1e-133 479.9 362 68.0
Cpa.g.sc5.274 Carica papaya HOM05D004218 ORTHO05D004938 4.0e-133 479.6 362 69.1
Rhsim12G0057400 Rhododendron simsii HOM05D004218 ORTHO05D004938 2.0e-132 477.2 333 71.2
TAR374G0431 Trochodendron aralioides HOM05D004218 ORTHO05D004938 2.0e-132 477.2 372 67.2
THA.LOC104822930 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 7.6e-132 475.3 325 72.6
vmacro01228 Vaccinium macrocarpon HOM05D004218 ORTHO05D004938 7.6e-132 475.3 381 64.8
Manes.05G096800 Manihot esculenta HOM05D004218 ORTHO05D004938 1.7e-131 474.2 365 69.3
Hund25269 Selenicereus undatus HOM05D004218 ORTHO05D004938 3.8e-131 473.0 305 75.4
CANSAT64G2557 Cannabis sativa HOM05D004218 ORTHO05D004938 1.1e-130 471.5 366 66.9
CAN.G279.12 Capsicum annuum HOM05D004218 ORTHO05D004938 7.1e-130 468.8 360 65.0
Gohir.D13G068200 Gossypium hirsutum HOM05D004218 ORTHO05D004938 7.1e-130 468.8 359 66.9
BolC5t29284H Brassica oleracea HOM05D004218 ORTHO05D004938 1.2e-129 468.0 327 70.0
A10p05580 Brassica napus HOM05D004218 ORTHO05D004938 2.1e-129 467.2 329 69.9
BraA10t42819Z Brassica rapa HOM05D004218 ORTHO05D004938 2.1e-129 467.2 329 69.9
AT1G07040 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 7.9e-129 465.3 352 68.2
CsaV3_6G036150 Cucumis sativus L. HOM05D004218 ORTHO05D004938 7.9e-129 465.3 360 65.6
AL1G17150 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.8e-128 464.2 355 67.9
Cc11_g13440 Coffea canephora HOM05D004218 ORTHO05D004938 2.3e-128 463.8 301 72.4
Gorai.013G077700 Gossypium raimondii HOM05D004218 ORTHO05D004938 3.0e-128 463.4 359 66.3
Carub.0001s0633 Capsella rubella HOM05D004218 ORTHO05D004938 3.9e-128 463.0 304 74.0
Sp1g05760 Schrenkiella parvula HOM05D004218 ORTHO05D004938 3.9e-128 463.0 324 70.4
CiPaw.05G139700 Carya illinoinensis HOM05D004218 ORTHO05D004938 6.7e-128 462.2 283 78.8
PSO017G6443 Papaver somniferum HOM05D004218 ORTHO05D004938 8.7e-128 461.8 364 65.1
PSO478G0406 Papaver somniferum HOM05D004218 ORTHO05D004938 1.5e-127 461.1 364 65.4
Thhalv10007958m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 4.3e-127 459.5 301 74.4
PGSC0003DMG400017643 Solanum tuberosum HOM05D004218 ORTHO05D004938 5.6e-127 459.1 355 65.6
Aqoxy3G03270 Aquilegia oxysepala HOM05D004218 ORTHO05D004938 7.4e-127 458.8 370 63.8
CARHR006730 Cardamine hirsuta HOM05D004218 ORTHO05D004938 9.6e-127 458.4 351 67.5
AUR62026251 Chenopodium quinoa HOM05D004218 ORTHO05D004938 1.3e-126 458.0 304 72.4
Sopen05g003030 Solanum pennellii HOM05D004218 ORTHO05D004938 1.3e-126 458.0 319 69.0
DCAR_027386 Daucus carota HOM05D004218 ORTHO05D004938 1.6e-126 457.6 314 71.0
MELO3C026498.2 Cucumis melo HOM05D004218 ORTHO05D004938 2.8e-126 456.8 329 69.0
MSTRG.7824 Avicennia marina HOM05D004218 ORTHO05D004938 3.7e-126 456.4 311 70.1
TWI18G0549 Tripterygium wilfordii HOM05D004218 ORTHO05D004938 3.7e-126 456.4 360 66.7
Peaxi162Scf00209g00319 Petunia axillaris HOM05D004218 ORTHO05D004938 4.8e-126 456.1 304 72.7
Potri.008G194800 Populus trichocarpa HOM05D004218 ORTHO05D004938 6.2e-126 455.7 320 71.9
SGA_v2.0_scaffold302G47864 Striga asiatica HOM05D004218 ORTHO05D004938 8.1e-126 455.3 356 64.6
Sabra08G0148000 Salix brachista HOM05D004218 ORTHO05D004938 1.1e-125 454.9 329 71.4
Dinv24956 Davidia involucrata HOM05D004218 ORTHO05D004938 4.0e-125 453.0 341 68.3
Solyc05g007060.4 Solanum lycopersicum HOM05D004218 ORTHO05D004938 6.9e-125 452.2 338 66.0
Sed0012992 Sechium edule HOM05D004218 ORTHO05D004938 3.4e-124 449.9 361 65.7
Lsat_1_v5_gn_8_54121 Lactuca sativa HOM05D004218 ORTHO05D004938 7.6e-124 448.7 333 68.2
Gohir.A13G052700 Gossypium hirsutum HOM05D004218 ORTHO05D004938 9.9e-124 448.4 323 69.0
Migut.L01342 Erythranthe guttata HOM05D004218 ORTHO05D004938 2.9e-123 446.8 361 61.2
Sc14g0008380 Simmondsia chinensis HOM05D004218 ORTHO05D004938 8.4e-123 445.3 375 64.5
Ah.01g005530 Amaranthus hybridus HOM05D004218 ORTHO05D004938 2.7e-121 440.3 297 71.7
EL10Ac6g13149 Beta vulgaris HOM05D004218 ORTHO05D004938 2.7e-121 440.3 325 68.3
CDE06G2220 Ceratophyllum demersum HOM05D004218 ORTHO05D004938 1.3e-120 438.0 319 68.3
ATR1120G161 Amborella trichopoda HOM05D004218 ORTHO05D004938 2.3e-120 437.2 330 66.1
ECA236G4940 Erigeron canadensis HOM05D004218 ORTHO05D004938 6.2e-118 429.1 312 68.3
unitig_749.g13251 Utricularia gibba HOM05D004218 ORTHO05D004938 1.8e-117 427.6 308 69.2
HanXRQChr08g0209171 Helianthus annuus HOM05D004218 ORTHO05D004938 2.4e-117 427.2 299 68.2
Os10g0463800 Oryza sativa ssp. japonica HOM05D004218 ORTHO05D004938 2.0e-116 424.1 296 67.9
Zm00001eb046510 Zea mays HOM05D004218 ORTHO05D004938 4.5e-116 422.9 297 67.7
HPP92_000630 Vanilla planifolia HOM05D004218 ORTHO05D004938 1.7e-115 421.0 320 63.1
C05p05130 Brassica napus HOM05D004218 ORTHO05D004938 2.1e-113 414.1 341 64.2
SalBow2G1790 Salvia bowleyana HOM05D004218 ORTHO05D004938 3.0e-112 410.2 291 68.0
SalBow2G2061 Salvia bowleyana HOM05D004218 ORTHO05D004938 3.0e-112 410.2 291 68.0
FAN07G0325 Fragaria x ananassa HOM05D004218 ORTHO05D004938 5.1e-112 409.5 245 80.4
SEGI_07096 Sequoiadendron giganteum HOM05D004218 ORTHO05D004938 8.7e-112 408.7 336 61.6
Nitab4.5_0009649g0010 Nicotiana tabacum HOM05D004218 ORTHO05D004938 7.4e-111 405.6 325 64.9
Psat0s917g0040 Pisum sativum HOM05D004218 ORTHO05D004938 3.3e-103 380.2 219 84.0
Nitab4.5_0009146g0020 Nicotiana tabacum HOM05D004218 ORTHO05D004938 5.7e-103 379.4 319 61.1
Pp3c14_9960 Physcomitrium patens HOM05D004218 ORTHO05D004938 3.4e-100 370.2 302 60.6
AagrBONN_evm.TU.Sc2ySwM_362.1084 Anthoceros agrestis HOM05D004218 ORTHO05D004938 1.7e-99 367.9 281 63.3
FvH4_4g31940 Fragaria vesca HOM05D004218 ORTHO05D004938 1.9e-98 364.4 295 63.7
Atru.chr11.1849 Acer truncatum HOM05D004218 ORTHO05D004938 1.6e-97 361.3 295 64.4
Mapoly0004s0239 Marchantia polymorpha HOM05D004218 ORTHO05D004938 1.3e-94 351.7 339 54.6
BraA07t29096Z Brassica rapa HOM05D004218 ORTHO05D004938 6.9e-93 345.9 296 55.7
Thhalv10007811m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 5.9e-92 342.8 298 53.7
SMO118G0107 Selaginella moellendorffii HOM05D004218 ORTHO05D004938 1.0e-91 342.0 291 58.4
Thhalv10008275m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.7e-91 341.3 299 53.2
BcaB03g14100 Brassica carinata HOM05D004218 ORTHO05D004938 2.2e-91 340.9 291 55.0
A07p13260 Brassica napus HOM05D004218 ORTHO05D004938 2.2e-91 340.9 296 55.1
AUR62026441 Chenopodium quinoa HOM05D004218 ORTHO05D004938 3.8e-91 340.1 280 63.6
BcaB03g11982 Brassica carinata HOM05D004218 ORTHO05D004938 2.5e-90 337.4 310 53.2
AL1G38480 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.2e-89 335.1 299 54.2
A07p13210 Brassica napus HOM05D004218 ORTHO05D004938 2.7e-89 334.0 298 52.7
BcaB06g28798 Brassica carinata HOM05D004218 ORTHO05D004938 8.0e-89 332.4 299 52.2
AL1G38490 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.0e-88 332.0 299 52.2
BolC4t27868H Brassica oleracea HOM05D004218 ORTHO05D004938 1.0e-88 332.0 299 52.5
BcaC06g35101 Brassica carinata HOM05D004218 ORTHO05D004938 2.3e-88 330.9 293 52.9
BraA07t29093Z Brassica rapa HOM05D004218 ORTHO05D004938 3.9e-88 330.1 298 52.0
Thhalv10023603m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 5.2e-88 329.7 296 54.4
AT1G27020 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 3.3e-87 327.0 297 54.9
AT1G27030 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 5.7e-87 326.2 299 52.2
THA.LOC104822097 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 7.4e-87 325.9 305 52.5
Carub.0001s2395 Capsella rubella HOM05D004218 ORTHO05D004938 9.7e-87 325.5 291 53.3
AL1G38500 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 2.8e-86 323.9 297 53.9
C07p19810 Brassica napus HOM05D004218 ORTHO05D004938 4.8e-86 323.2 297 53.2
BolC7t42494H Brassica oleracea HOM05D004218 ORTHO05D004938 4.8e-86 323.2 297 53.2
A07p13220 Brassica napus HOM05D004218 ORTHO05D004938 6.3e-86 322.8 297 53.2
Sp1g21770 Schrenkiella parvula HOM05D004218 ORTHO05D004938 6.3e-86 322.8 295 53.6
Sp1g21780 Schrenkiella parvula HOM05D004218 ORTHO05D004938 6.3e-86 322.8 297 52.5
Thhalv10008276m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 3.1e-85 320.5 297 51.9
CARHR024890 Cardamine hirsuta HOM05D004218 ORTHO05D004938 7.0e-85 319.3 295 50.8
Thhalv10000255m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 9.1e-85 318.9 299 52.5
CARHR024900 Cardamine hirsuta HOM05D004218 ORTHO05D004938 2.6e-84 317.4 299 52.5
BcaB03g14099 Brassica carinata HOM05D004218 ORTHO05D004938 7.7e-84 315.8 307 50.2
BcaC06g35098 Brassica carinata HOM05D004218 ORTHO05D004938 7.7e-84 315.8 272 54.8
Sp1g21785 Schrenkiella parvula HOM05D004218 ORTHO05D004938 7.7e-84 315.8 298 53.0
BraA09t39542Z Brassica rapa HOM05D004218 ORTHO05D004938 6.5e-83 312.8 301 52.2
A09p40450 Brassica napus HOM05D004218 ORTHO05D004938 1.1e-82 312.0 301 51.8
BraA08t34706Z Brassica rapa HOM05D004218 ORTHO05D004938 1.1e-82 312.0 305 50.2
Glyma.01G042500 Glycine max HOM05D004218 ORTHO05D004938 1.5e-82 311.6 369 53.7
BraA07t29094Z Brassica rapa HOM05D004218 ORTHO05D004938 2.7e-81 307.4 299 50.8
A08p27710 Brassica napus HOM05D004218 ORTHO05D004938 8.0e-81 305.8 305 49.2
Carub.0001s2394 Capsella rubella HOM05D004218 ORTHO05D004938 1.0e-80 305.4 300 48.7
AL1G38470 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.6e-76 291.6 272 50.7
BcaC07g39255 Brassica carinata HOM05D004218 ORTHO05D004938 2.2e-75 287.7 295 47.1
BcaC05g26350 Brassica carinata HOM05D004218 ORTHO05D004938 4.0e-72 276.9 300 49.7
C08p22580 Brassica napus HOM05D004218 ORTHO05D004938 4.0e-72 276.9 573 30.7
Haze_12061 Corylus avellana HOM05D004218 ORTHO05D004938 4.0e-72 276.9 233 63.5
BolC5t31091H Brassica oleracea HOM05D004218 ORTHO05D004938 1.7e-70 271.6 286 49.3
C05p23720 Brassica napus HOM05D004218 ORTHO05D004938 2.4e-69 267.7 280 48.6
BcaC06g35100 Brassica carinata HOM05D004218 ORTHO05D004938 4.7e-65 253.4 244 51.6
AL8G21080 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 3.0e-56 224.2 220 51.4
PRCOL_00000833 Prasinoderma coloniale HOM05D004218 ORTHO05D004938 8.9e-56 222.6 298 41.6
BcaC05g24668 Brassica carinata HOM05D004218 ORTHO05D002942 2.9e-54 217.6 209 54.1
C07p19800 Brassica napus HOM05D004218 ORTHO05D004938 1.1e-53 215.7 194 52.6
BolC7t42493H Brassica oleracea HOM05D004218 ORTHO05D004938 1.1e-53 215.7 194 52.6
Lj6A794G97 Lonicera japonica HOM05D004218 ORTHO05D004938 5.4e-53 213.4 189 59.8
Cre07.g342800 Chlamydomonas reinhardtii HOM05D004218 ORTHO05D004938 1.7e-46 191.8 323 35.9
BolC7t42500H Brassica oleracea HOM05D004218 ORTHO05D004938 3.4e-39 167.5 128 56.2
C07p19850 Brassica napus HOM05D004218 ORTHO05D004938 2.4e-37 161.4 128 54.7
BolC7t42503H Brassica oleracea HOM05D004218 ORTHO05D004938 2.4e-37 161.4 128 54.7
AL8G21090 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 3.5e-36 157.5 308 32.1
BolC8t49896H Brassica oleracea HOM05D004218 ORTHO05D004938 1.7e-35 155.2 148 50.0
C07p19840 Brassica napus HOM05D004218 ORTHO05D004938 1.5e-31 142.1 111 53.2
C07p19830 Brassica napus HOM05D004218 ORTHO05D004938 1.4e-29 135.6 154 49.4
AUR62026443 Chenopodium quinoa HOM05D004218 ORTHO05D004938 1.4e-29 135.6 81 80.2
CAN.G683.6 Capsicum annuum HOM05D004218 ORTHO05D004938 4.4e-23 114.0 94 62.8
MCO10G201 Micromonas commoda HOM05D004218 ORTHO05D004938 1.9e-21 108.6 298 28.9
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 2.4e-13 81.6 57 70.2


User provided reference genes

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