Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1371 Trifolium pratense HOM05D005061 ORTHO05D006001 5.8e-90 334.3 184 100.0
TPR.G26387 Trifolium pratense HOM05D005061 ORTHO05D006001 3.0e-86 322.0 184 96.7
Psat6g003280 Pisum sativum HOM05D005061 ORTHO05D006001 6.4e-81 304.3 184 90.8
Medtr1g025570 Medicago truncatula HOM05D005061 ORTHO05D006001 6.8e-67 257.7 174 85.6
Ca_04063_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 3.2e-64 248.8 184 76.6
Ca_04069_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 3.2e-64 248.8 184 76.6
Psat3g206160 Pisum sativum HOM05D005061 ORTHO05D006001 7.8e-63 244.2 184 77.7
Lj1g0023949 Lotus japonicus HOM05D005061 ORTHO05D006001 2.5e-61 239.2 178 74.2
Lj1g0014719 Lotus japonicus HOM05D005061 ORTHO05D006001 3.3e-61 238.8 178 74.2
Lalb_Chr01g0000091 Lupinus albus HOM05D005061 ORTHO05D006001 2.1e-60 236.1 175 73.1
Medtr7g407030 Medicago truncatula HOM05D005061 ORTHO05D006001 7.6e-58 227.6 184 72.8
Glyma.08G364400 Glycine max HOM05D005061 ORTHO05D006001 2.8e-52 209.1 184 64.7
COL.COLO4_20183 Corchorus olitorius HOM05D005061 ORTHO05D006001 1.1e-51 207.2 175 64.6
Glyma.18G297700 Glycine max HOM05D005061 ORTHO05D006001 9.0e-51 204.1 174 66.7
Prupe.1G159300 Prunus persica HOM05D005061 ORTHO05D006001 1.2e-50 203.8 175 62.9
Cpa.g.sc170.49 Carica papaya HOM05D005061 ORTHO05D006001 1.7e-49 199.9 175 61.7
Gohir.D10G140500 Gossypium hirsutum HOM05D005061 ORTHO05D006001 8.4e-49 197.6 177 59.9
Gorai.011G156100 Gossypium raimondii HOM05D005061 ORTHO05D006001 7.1e-48 194.5 173 60.7
Cpa.g.sc150.53 Carica papaya HOM05D005061 ORTHO05D006001 5.1e-46 188.3 174 60.9
MD14G1080700 Malus domestica HOM05D005061 ORTHO05D006001 1.5e-45 186.8 175 56.6
A06p38500 Brassica napus HOM05D005061 ORTHO05D006001 7.4e-45 184.5 180 56.7
BcaNung02589 Brassica carinata HOM05D005061 ORTHO05D006001 9.6e-45 184.1 180 56.7
C07p39760 Brassica napus HOM05D005061 ORTHO05D006001 9.6e-45 184.1 180 56.7
Manes.10G081400 Manihot esculenta HOM05D005061 ORTHO05D006001 9.6e-45 184.1 173 58.4
Thhalv10004918m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 1.3e-44 183.7 180 56.7
Carub.0008s0903 Capsella rubella HOM05D005061 ORTHO05D006001 1.6e-44 183.3 175 57.7
Manes.02G208300 Manihot esculenta HOM05D005061 ORTHO05D006001 1.6e-44 183.3 174 58.0
BcaC06g30707 Brassica carinata HOM05D005061 ORTHO05D006001 2.1e-44 183.0 180 55.6
BraA06t26765Z Brassica rapa HOM05D005061 ORTHO05D006001 2.8e-44 182.6 180 56.1
MD12G1086100 Malus domestica HOM05D005061 ORTHO05D006001 2.8e-44 182.6 183 55.7
Dinv38211 Davidia involucrata HOM05D005061 ORTHO05D006001 3.7e-44 182.2 176 56.2
AL8G22790 Arabidopsis lyrata HOM05D005061 ORTHO05D006001 5.3e-43 178.3 175 56.6
CSS0003459 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 5.3e-43 178.3 183 56.3
PGR042G2541 Punica granatum HOM05D005061 ORTHO05D006001 5.3e-43 178.3 181 55.2
TAR624G0493 Trochodendron aralioides HOM05D002455 ORTHO05D006001 2.6e-42 176.0 180 54.4
Gohir.A10G126200 Gossypium hirsutum HOM05D005061 ORTHO05D006001 3.4e-42 175.6 177 54.8
TAR636G2803 Trochodendron aralioides HOM05D005061 ORTHO05D006001 5.8e-42 174.9 179 53.6
AT5G49210 Arabidopsis thaliana HOM05D005061 ORTHO05D006001 2.2e-41 172.9 175 55.4
Aa31LG11G8230 Aethionema arabicum HOM05D005061 ORTHO05D006001 2.9e-41 172.6 179 54.7
CARHR182460 Cardamine hirsuta HOM05D005061 ORTHO05D006001 3.8e-41 172.2 180 53.9
Duzib212G0867 Durio zibethinus HOM05D005061 ORTHO05D006001 3.8e-41 172.2 183 54.6
BcaC03g17706 Brassica carinata HOM05D005061 ORTHO05D006001 1.4e-40 170.2 175 54.3
C02p57130 Brassica napus HOM05D005061 ORTHO05D006001 1.4e-40 170.2 175 54.3
Lj8A15T45 Lonicera japonica HOM05D005061 ORTHO05D006001 1.9e-40 169.9 183 53.0
FAN07G0218 Fragaria x ananassa HOM05D005061 ORTHO05D006001 2.5e-40 169.5 180 54.4
RcHm_v2.0_Chr4g0414321 Rosa chinensis HOM05D005061 ORTHO05D006001 2.5e-40 169.5 175 54.3
FvH4_4g13570 Fragaria vesca HOM05D005061 ORTHO05D006001 3.2e-40 169.1 180 55.0
QL07p041720 Quercus lobata HOM05D005061 ORTHO05D006001 3.2e-40 169.1 183 54.6
FAN22G0582 Fragaria x ananassa HOM05D005061 ORTHO05D006001 4.2e-40 168.7 180 53.3
FAN17G0047 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.6e-39 166.8 180 53.9
CANSAT78G0571 Cannabis sativa HOM05D005061 ORTHO05D006001 7.9e-39 164.5 183 54.6
ECA247G1905 Erigeron canadensis HOM05D005061 ORTHO05D006001 7.9e-39 164.5 168 54.2
Hma1.2p1_0383F.1_g140630 Hydrangea macrophylla HOM05D005061 ORTHO05D006001 5.1e-38 161.8 169 52.1
Eucgr.G02600 Eucalyptus grandis HOM05D005061 ORTHO05D006001 1.5e-37 160.2 163 54.6
SGA_v2.0_scaffold90G27899 Striga asiatica HOM05D005061 ORTHO05D006001 1.9e-37 159.8 164 54.3
Cc03_g08040 Coffea canephora HOM05D005061 ORTHO05D006001 7.4e-37 157.9 176 52.3
Phvul.008G004900 Phaseolus vulgaris HOM05D005061 ORTHO05D006001 1.6e-36 156.8 172 55.8
Sp2g19580 Schrenkiella parvula HOM05D005061 ORTHO05D006001 1.6e-36 156.8 180 52.2
SGA_v2.0_scaffold128G34119 Striga asiatica HOM05D005061 ORTHO05D006001 2.8e-36 156.0 168 52.4
BraA02t08777Z Brassica rapa HOM05D005061 ORTHO05D006001 4.8e-36 155.2 175 52.0
BcaB07g34140 Brassica carinata HOM05D005061 ORTHO05D006001 6.2e-36 154.8 175 51.4
Migut.G00717 Erythranthe guttata HOM05D005061 ORTHO05D006001 2.4e-35 152.9 173 51.4
PSO675G5536 Papaver somniferum HOM05D005061 ORTHO05D006001 6.9e-35 151.4 159 50.3
A02p37930 Brassica napus HOM05D005061 ORTHO05D006001 9.0e-35 151.0 175 50.9
PSO541G4502 Papaver somniferum HOM05D005061 ORTHO05D006001 9.0e-35 151.0 159 50.3
SalBow8G4870 Salvia bowleyana HOM05D005061 ORTHO05D006001 1.2e-34 150.6 161 54.7
Atru.chr4.1296 Acer truncatum HOM05D005061 ORTHO05D006001 1.5e-34 150.2 182 49.5
Solyc05g053730.3 Solanum lycopersicum HOM05D005061 ORTHO05D006001 2.0e-34 149.8 168 51.2
Sopen05g032210 Solanum pennellii HOM05D005061 ORTHO05D006001 2.0e-34 149.8 168 51.2
Ciclev10005973m.g Citrus clementina HOM05D005061 ORTHO05D006001 3.4e-34 149.1 176 49.4
HanXRQChr13g0420931 Helianthus annuus HOM05D005061 ORTHO05D006001 5.8e-34 148.3 168 50.6
QL01p037004 Quercus lobata HOM05D005061 ORTHO05D006001 7.6e-34 147.9 161 55.3
unitig_26.g9510 Utricularia gibba HOM05D005061 ORTHO05D006001 7.6e-34 147.9 168 51.8
BolC2t11785H Brassica oleracea HOM05D005061 ORTHO05D006001 1.0e-33 147.5 204 45.6
PGSC0003DMG400015756 Solanum tuberosum HOM05D005061 ORTHO05D006001 2.2e-33 146.4 181 48.6
CDE07G0811 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 6.5e-33 144.8 159 50.3
CDE04G1543 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 8.4e-33 144.4 168 49.4
HPP92_021062 Vanilla planifolia HOM05D005061 ORTHO05D006001 6.1e-31 138.3 186 47.3
VMungo1383G0426 Vigna mungo HOM05D005061 ORTHO05D006001 6.1e-31 138.3 173 52.0
arahy.Tifrunner.gnm1.ann1.B38FIW Arachis hypogaea HOM05D005061 ORTHO05D006001 1.0e-30 137.5 155 52.9
arahy.Tifrunner.gnm1.ann1.V03Z72 Arachis hypogaea HOM05D005061 ORTHO05D006001 1.0e-30 137.5 155 52.9
Hund18997 Selenicereus undatus HOM05D005061 ORTHO05D006001 1.3e-30 137.1 173 49.7
THA.LOC104808705 Tarenaya hassleriana HOM05D005061 ORTHO05D006001 1.3e-30 137.1 175 48.6
Thecc.04G199600 Theobroma cacao HOM05D005061 ORTHO05D006001 3.0e-30 136.0 183 47.0
Sed0002608 Sechium edule HOM05D005061 ORTHO05D006001 8.7e-30 134.4 180 47.2
EL10Ac9g22415 Beta vulgaris HOM05D005061 ORTHO05D006001 1.1e-29 134.0 170 47.1
Rhsim02G0060400 Rhododendron simsii HOM05D005061 ORTHO05D006001 1.1e-29 134.0 215 41.9
Peaxi162Scf00423g00316 Petunia axillaris HOM05D005061 ORTHO05D006001 1.5e-29 133.7 158 50.6
MSTRG.9809 Avicennia marina HOM05D005061 ORTHO05D006001 5.7e-29 131.7 159 49.7
Os11g0148600 Oryza sativa ssp. japonica HOM05D005061 ORTHO05D006001 5.7e-29 131.7 158 50.0
EL10Ac9g22416 Beta vulgaris HOM05D005061 ORTHO05D006001 1.3e-28 130.6 165 47.9
AUR62006500 Chenopodium quinoa HOM05D005061 ORTHO05D006001 1.6e-28 130.2 159 49.7
Sc19g0007290 Simmondsia chinensis HOM05D005061 ORTHO05D006001 1.4e-27 127.1 187 43.9
BcaB07g34141 Brassica carinata HOM05D005061 ORTHO05D006001 1.8e-27 126.7 175 43.4
BolC7t44502H Brassica oleracea HOM05D005061 ORTHO05D006001 4.1e-27 125.6 124 54.8
Atru.chr4.1292 Acer truncatum HOM05D005061 ORTHO05D006001 6.9e-27 124.8 128 55.5
arahy.Tifrunner.gnm1.ann1.IKZ5YQ Arachis hypogaea HOM05D000225 ORTHO05D001595 9.0e-27 124.4 107 65.4
TWI34G0245 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 9.0e-27 124.4 175 46.3
Migut.N00403 Erythranthe guttata HOM05D005061 ORTHO05D006001 3.4e-26 122.5 158 48.1
CAN.G765.25 Capsicum annuum HOM05D005061 ORTHO05D006001 4.5e-26 122.1 164 44.5
Nitab4.5_0003502g0080 Nicotiana tabacum HOM05D005061 ORTHO05D006001 7.7e-26 121.3 187 43.9
BcaB04g19598 Brassica carinata HOM05D005061 ORTHO05D006001 1.0e-25 120.9 174 46.0
vmacro15554 Vaccinium macrocarpon HOM05D005061 ORTHO05D006001 1.0e-25 120.9 217 38.2
Aqoxy1G01140 Aquilegia oxysepala HOM05D005061 ORTHO05D006001 5.0e-25 118.6 152 45.4
Haze_11630 Corylus avellana HOM05D005061 ORTHO05D006001 7.2e-24 114.8 184 43.5
arahy.Tifrunner.gnm1.ann1.FDW9Z4 Arachis hypogaea HOM05D005061 ORTHO05D006001 1.2e-23 114.0 170 44.7
Zm00001eb092840 Zea mays HOM05D005061 ORTHO05D006001 2.7e-23 112.8 158 42.4
GSVIVG01020921001 Vitis vinifera HOM05D005061 ORTHO05D006001 1.8e-22 110.2 167 41.9
MELO3C006306.2 Cucumis melo HOM05D005061 ORTHO05D006001 3.0e-22 109.4 180 39.4
Potri.001G317300 Populus trichocarpa HOM05D005061 ORTHO05D006001 3.9e-22 109.0 182 42.3
MSTRG.4232 Avicennia marina HOM05D005061 ORTHO05D006001 5.1e-22 108.6 164 42.7
Sabra16G0200700 Salix brachista HOM05D005061 ORTHO05D006001 6.7e-22 108.2 174 43.1
Cfa014943 Carpinus fangiana HOM05D005061 ORTHO05D006001 8.8e-22 107.8 184 41.8
arahy.Tifrunner.gnm1.ann1.16QZ2B Arachis hypogaea HOM05D001164 ORTHO05D026902 2.0e-21 106.7 86 73.3
Oeu006186.1 Olea europaea HOM05D005061 ORTHO05D006001 7.4e-21 104.8 109 58.7
AUR62025033 Chenopodium quinoa HOM05D005061 ORTHO05D006001 3.7e-20 102.4 201 38.8
arahy.Tifrunner.gnm1.ann1.SQKG7P Arachis hypogaea HOM05D005061 ORTHO05D006001 1.8e-19 100.1 104 58.7
Nitab4.5_0002260g0170 Nicotiana tabacum HOM05D005061 ORTHO05D006001 1.8e-19 100.1 180 39.4
Ah.09g228330 Amaranthus hybridus HOM05D005061 ORTHO05D006001 6.9e-19 98.2 173 41.6
DCAR_026627 Daucus carota HOM05D005061 ORTHO05D006001 2.0e-18 96.7 129 49.6
TWI34G1372 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 1.0e-17 94.4 174 39.7
CsaV3_3G010880 Cucumis sativus L. HOM05D005061 ORTHO05D006001 2.9e-17 92.8 89 51.7
CiPaw.01G118900 Carya illinoinensis HOM05D005061 ORTHO05D006001 6.5e-17 91.7 179 39.7
SEGI_31023 Sequoiadendron giganteum HOM05D005061 ORTHO05D006001 1.1e-16 90.9 180 35.0
Dinv27216 Davidia involucrata HOM05D005061 ORTHO05D006001 2.5e-16 89.7 175 38.3
FvH4_4g13580 Fragaria vesca HOM05D005061 ORTHO05D006001 4.2e-16 89.0 157 44.6
FAN12G1864 Fragaria x ananassa HOM05D005061 ORTHO05D006001 4.2e-16 89.0 157 44.6
Lsat_1_v5_gn_2_46320 Lactuca sativa HOM05D005061 ORTHO05D006001 7.2e-16 88.2 176 37.5
arahy.Tifrunner.gnm1.ann1.KB0HQZ Arachis hypogaea HOM05D005061 ORTHO05D006001 9.4e-16 87.8 104 52.9
Actinidia23412 Actinidia chinensis HOM05D005061 ORTHO05D006001 1.6e-15 87.0 178 37.1
Oeu025020.1 Olea europaea HOM05D005061 ORTHO05D006001 6.1e-15 85.1 134 41.0
arahy.Tifrunner.gnm1.ann1.W60CWR Arachis hypogaea HOM05D005061 ORTHO05D006001 7.9e-15 84.7 126 47.6
CSS0041532 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 1.4e-14 84.0 101 51.5
CSS0044809 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 1.4e-14 84.0 101 51.5
arahy.Tifrunner.gnm1.ann1.125U9W Arachis hypogaea HOM05D005061 ORTHO05D006001 3.0e-14 82.8 106 50.9
arahy.Tifrunner.gnm1.ann1.57E4K5 Arachis hypogaea HOM05D000877 ORTHO05D026902 2.6e-13 79.7 72 66.7
arahy.Tifrunner.gnm1.ann1.I6PPQF Arachis hypogaea HOM05D000877 ORTHO05D026902 2.6e-13 79.7 72 66.7
arahy.Tifrunner.gnm1.ann1.L4TH9M Arachis hypogaea HOM05D005061 ORTHO05D006001 3.7e-12 75.9 122 45.1
Thhalv10009372m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 8.2e-12 74.7 68 51.5
arahy.Tifrunner.gnm1.ann1.J1UTGX Arachis hypogaea HOM05D005061 ORTHO05D016631 1.1e-11 74.3 104 48.1
arahy.Tifrunner.gnm1.ann1.02VCKU Arachis hypogaea HOM05D000115 ORTHO05D026902 1.2e-10 70.9 68 64.7
FAN22G2287 Fragaria x ananassa HOM05D005061 ORTHO05D006001 3.5e-10 69.3 153 41.8
arahy.Tifrunner.gnm1.ann1.MN077J Arachis hypogaea HOM05D030690 ORTHO05D006001 1.0e-09 67.8 57 71.9
Lsat_1_v5_gn_6_60821 Lactuca sativa HOM05D005061 ORTHO05D006001 1.3e-09 67.4 163 33.7
FAN07G1641 Fragaria x ananassa HOM05D005061 ORTHO05D006001 3.8e-09 65.9 141 41.8
ATR0745G004 Amborella trichopoda HOM05D005061 ORTHO05D006001 2.5e-08 63.2 162 31.5
FAN17G2161 Fragaria x ananassa HOM05D005061 ORTHO05D006001 3.2e-08 62.8 150 40.0
BolC9t53436H Brassica oleracea HOM05D005061 ORTHO05D006001 1.2e-07 60.8 47 68.1
FAN12G0303 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.2e-07 60.8 57 57.9
Lj3P401T12 Lonicera japonica HOM05D005061 ORTHO05D006001 3.6e-07 59.3 42 57.1
Sc19g0007210 Simmondsia chinensis HOM05D005061 ORTHO05D006001 6.1e-07 58.5 69 47.8


User provided reference genes

Program Settings