Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 2.0e-130 469.2 242 100.0
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 4.7e-108 394.8 244 88.5
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 1.6e-103 379.8 246 83.3
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 3.9e-102 375.2 242 82.2
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 1.0e-86 323.9 238 71.0
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 1.9e-85 319.7 237 72.6
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 1.1e-83 313.9 236 71.6
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 1.8e-83 313.2 237 72.2
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 1.3e-81 307.0 236 68.2
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 3.2e-80 302.4 236 66.1
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 3.0e-78 295.8 248 65.7
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 3.0e-78 295.8 248 65.7
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 1.3e-76 290.4 236 64.0
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 1.8e-75 286.6 241 63.1
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 5.8e-74 281.6 240 63.8
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 5.8e-74 281.6 240 63.8
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 5.8e-74 281.6 240 63.8
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 9.9e-74 280.8 239 65.7
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 1.7e-73 280.0 243 62.1
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 2.2e-73 279.6 194 70.1
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 4.2e-72 275.4 238 60.1
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 9.3e-72 274.2 238 60.1
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 1.2e-71 273.9 244 59.4
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 2.1e-71 273.1 241 61.0
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 6.0e-71 271.6 242 59.9
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 7.9e-71 271.2 185 69.2
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 1.8e-70 270.0 240 59.6
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 3.0e-70 269.2 240 59.6
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 3.0e-70 269.2 242 59.1
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 3.9e-70 268.9 242 59.9
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 3.9e-70 268.9 239 60.3
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 6.7e-70 268.1 239 60.7
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 6.7e-70 268.1 240 57.1
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 8.7e-70 267.7 200 66.0
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 8.7e-70 267.7 236 60.6
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 8.7e-70 267.7 222 61.3
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 1.1e-69 267.3 233 59.7
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.5e-69 266.9 239 60.7
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 1.9e-69 266.5 176 73.3
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 2.5e-69 266.2 186 69.4
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 4.3e-69 265.4 239 59.4
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 5.6e-69 265.0 244 60.2
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 7.4e-69 264.6 226 61.1
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 1.3e-68 263.8 226 61.1
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 1.3e-68 263.8 226 61.1
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 1.3e-68 263.8 241 59.3
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 1.3e-68 263.8 239 59.0
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 2.1e-68 263.1 226 61.1
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 2.1e-68 263.1 226 60.6
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 2.8e-68 262.7 240 59.6
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 2.8e-68 262.7 242 60.3
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 3.7e-68 262.3 249 59.4
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 3.7e-68 262.3 233 60.5
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 3.7e-68 262.3 233 59.7
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 4.8e-68 261.9 241 58.1
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 6.2e-68 261.5 163 79.8
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 8.1e-68 261.2 176 70.5
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 1.1e-67 260.8 228 60.5
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 1.1e-67 260.8 216 61.1
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 1.4e-67 260.4 243 58.0
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 9.0e-67 257.7 242 58.3
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 1.2e-66 257.3 242 58.3
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 1.5e-66 256.9 240 57.5
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 2.6e-66 256.1 247 57.9
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 2.6e-66 256.1 251 56.6
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 2.6e-66 256.1 191 65.4
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 3.4e-66 255.8 228 60.5
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 3.4e-66 255.8 228 60.5
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 1.0e-65 254.2 229 58.5
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 1.3e-65 253.8 226 58.0
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 1.3e-65 253.8 226 58.0
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 1.7e-65 253.4 236 57.6
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 1.7e-65 253.4 179 64.8
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 2.2e-65 253.1 236 58.1
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 2.2e-65 253.1 233 59.7
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 3.8e-65 252.3 176 68.2
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 3.8e-65 252.3 193 63.2
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 4.9e-65 251.9 242 58.3
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 4.9e-65 251.9 233 59.7
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 6.5e-65 251.5 238 55.0
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 6.5e-65 251.5 229 59.4
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 6.5e-65 251.5 238 58.0
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 8.4e-65 251.1 228 60.1
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 1.4e-64 250.4 236 56.8
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 1.4e-64 250.4 180 67.2
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 1.4e-64 250.4 245 54.3
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 2.5e-64 249.6 177 66.7
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 3.2e-64 249.2 245 56.3
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 3.2e-64 249.2 244 56.1
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 4.2e-64 248.8 232 55.6
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 5.5e-64 248.4 237 57.0
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 7.1e-64 248.1 248 55.2
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 7.1e-64 248.1 243 56.0
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 9.3e-64 247.7 234 56.8
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 9.3e-64 247.7 209 60.8
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 1.2e-63 247.3 191 64.4
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 1.6e-63 246.9 180 66.7
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 3.5e-63 245.7 240 55.4
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 6.0e-63 245.0 207 58.0
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 6.0e-63 245.0 242 57.9
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 1.8e-62 243.4 177 66.7
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 2.3e-62 243.0 240 55.0
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 2.3e-62 243.0 252 54.4
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 3.0e-62 242.7 220 57.7
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 3.9e-62 242.3 239 56.1
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 8.7e-62 241.1 216 56.9
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 8.7e-62 241.1 239 56.5
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 8.7e-62 241.1 185 63.2
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 8.7e-62 241.1 181 63.5
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 1.1e-61 240.7 236 53.0
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 1.9e-61 240.0 240 56.2
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 5.7e-61 238.4 192 62.0
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 1.6e-60 236.9 149 77.2
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 2.1e-60 236.5 233 52.8
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 2.8e-60 236.1 233 52.4
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 2.8e-60 236.1 181 63.5
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 6.2e-60 235.0 238 54.6
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 2.4e-59 233.0 236 53.0
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 6.9e-59 231.5 223 55.6
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 9.0e-59 231.1 195 59.5
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 9.0e-59 231.1 175 61.7
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 1.2e-58 230.7 172 61.6
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 1.2e-58 230.7 228 52.6
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 3.4e-58 229.2 195 57.4
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 4.5e-58 228.8 238 54.2
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 5.8e-58 228.4 161 67.1
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.4e-56 223.8 147 72.1
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 1.2e-55 220.7 190 60.0
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 1.6e-55 220.3 230 51.3
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 6.7e-54 214.9 173 57.2
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 6.7e-54 214.9 171 59.1
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 8.7e-54 214.5 209 56.5
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 8.7e-54 214.5 185 55.1
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 2.5e-53 213.0 220 51.4
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 2.8e-52 209.5 195 54.9
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.4e-51 206.5 164 63.4
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 2.0e-50 203.4 166 65.1
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 1.3e-49 200.7 197 50.8
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 3.8e-49 199.1 224 49.1
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 2.7e-47 193.0 186 55.4
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 5.1e-46 188.7 132 65.2
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 5.0e-41 172.2 147 60.5
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 5.5e-40 168.7 112 69.6
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 2.0e-37 160.2 216 40.3
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 8.2e-36 154.8 110 66.4
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 2.6e-34 149.8 207 41.5
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 4.2e-32 142.5 178 41.0
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 9.4e-32 141.4 161 44.7
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 1.7e-28 130.6 169 40.8
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 2.7e-26 123.2 150 44.7
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 5.0e-25 119.0 76 72.4
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 3.1e-19 99.8 163 36.2
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 1.3e-17 94.4 86 57.0
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 7.0e-11 72.0 86 39.5
Actinidia22615 Actinidia chinensis HOM05D004405 ORTHO05D005613 2.9e-09 66.6 106 41.5


User provided reference genes

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