Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G13647 Trifolium pratense HOM05D003987 ORTHO05D004532 2.1e-211 738.8 383 100.0
Medtr7g066170 Medicago truncatula HOM05D003987 ORTHO05D004532 3.1e-53 213.4 340 43.8
Glyma.07G142800 Glycine max HOM05D003987 ORTHO05D004532 5.3e-37 159.5 208 46.2
Lj1g0003107 Lotus japonicus HOM05D003987 ORTHO05D004532 6.9e-37 159.1 223 47.1
Glyma.18G193700 Glycine max HOM05D003987 ORTHO05D004532 9.0e-37 158.7 208 46.2
Lalb_Chr01g0022851 Lupinus albus HOM05D003987 ORTHO05D004532 8.4e-35 152.1 216 45.8
Lalb_Chr19g0124881 Lupinus albus HOM05D003987 ORTHO05D004532 3.7e-30 136.7 209 40.7
TPR.G34870 Trifolium pratense HOM05D003987 ORTHO05D004532 4.1e-29 133.3 217 46.1
Lj3g0003026 Lotus japonicus HOM05D003987 ORTHO05D004532 1.5e-28 131.3 242 40.1
Phvul.008G111900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.6e-25 121.3 209 41.6
VMungo1383G2510 Vigna mungo HOM05D003987 ORTHO05D004532 1.3e-24 118.2 208 38.5
arahy.Tifrunner.gnm1.ann1.B3S732 Arachis hypogaea HOM05D003987 ORTHO05D004532 1.1e-23 115.2 241 36.1
Glyma.01G108800 Glycine max HOM05D003987 ORTHO05D004532 1.9e-23 114.4 211 40.3
arahy.Tifrunner.gnm1.ann1.S0ZXK0 Arachis hypogaea HOM05D003987 ORTHO05D004532 3.3e-23 113.6 241 35.7
Glyma.U031101 Glycine max HOM05D003987 ORTHO05D004532 1.3e-22 111.7 210 39.0
Glyma.01G108900 Glycine max HOM05D003987 ORTHO05D004532 2.2e-22 110.9 210 38.6
Glyma.01G153900 Glycine max HOM05D003987 ORTHO05D004532 6.3e-22 109.4 219 38.4
PGR031G1271 Punica granatum HOM05D003987 ORTHO05D004532 3.8e-19 100.1 221 33.9
Ca_20115_v3 Cicer arietinum L. HOM05D003987 ORTHO05D004532 3.2e-18 97.1 218 37.2
CSS0029662 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 4.2e-18 96.7 211 33.2
ClCG10G021770 Citrullus lanatus HOM05D003987 ORTHO05D004532 2.7e-17 94.0 194 33.5
Glyma.03G074167 Glycine max HOM05D003987 ORTHO05D004532 3.6e-17 93.6 201 34.3
Psat7g242560 Pisum sativum HOM05D003987 ORTHO05D004532 6.1e-17 92.8 217 34.1
arahy.Tifrunner.gnm1.ann1.C5KK4K Arachis hypogaea HOM05D003987 ORTHO05D004532 7.9e-17 92.4 229 34.5
arahy.Tifrunner.gnm1.ann1.L5BN96 Arachis hypogaea HOM05D003987 ORTHO05D004532 1.8e-16 91.3 228 32.9
CsaV3_3G034330 Cucumis sativus L. HOM05D003987 ORTHO05D004532 2.3e-16 90.9 226 33.2
Gorai.012G110200 Gossypium raimondii HOM05D003987 ORTHO05D004532 3.0e-16 90.5 236 31.4
Nitab4.5_0000119g0280 Nicotiana tabacum HOM05D003987 ORTHO05D004532 3.0e-16 90.5 205 33.2
Gohir.D04G127200 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.5e-15 88.2 236 30.9
Actinidia05340 Actinidia chinensis HOM05D003987 ORTHO05D004532 2.0e-15 87.8 213 29.1
MSTRG.19040 Avicennia marina HOM05D003987 ORTHO05D004532 4.4e-15 86.7 113 38.9
MELO3C009204.2 Cucumis melo HOM05D003987 ORTHO05D004532 4.4e-15 86.7 203 33.0
Gorai.002G259700 Gossypium raimondii HOM05D003987 ORTHO05D004532 5.7e-15 86.3 235 29.8
Lj2A83T77 Lonicera japonica HOM05D003987 ORTHO05D004532 5.7e-15 86.3 220 33.6
arahy.Tifrunner.gnm1.ann1.84Z36X Arachis hypogaea HOM05D003987 ORTHO05D004532 7.4e-15 85.9 229 32.3
Haze_20924 Corylus avellana HOM05D003987 ORTHO05D004532 7.4e-15 85.9 232 32.8
Manes.09G100200 Manihot esculenta HOM05D003987 ORTHO05D004532 9.7e-15 85.5 187 34.2
C04p09710 Brassica napus HOM05D003987 ORTHO05D004532 1.3e-14 85.1 218 32.1
Dinv35526 Davidia involucrata HOM05D003987 ORTHO05D004532 1.3e-14 85.1 241 29.9
Gohir.A01G224300 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.3e-14 85.1 235 28.9
CANSAT78G1629 Cannabis sativa HOM05D003987 ORTHO05D004532 1.7e-14 84.7 201 34.8
Medtr4g019040 Medicago truncatula HOM05D003987 ORTHO05D004532 1.7e-14 84.7 212 31.1
Nitab4.5_0017865g0010 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.7e-14 84.7 199 30.7
CSS0016809 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 2.8e-14 84.0 213 29.1
CSS0027188 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 2.8e-14 84.0 213 29.1
Gohir.A04G086900 Gossypium hirsutum HOM05D003987 ORTHO05D004532 2.8e-14 84.0 214 30.4
Lsat_1_v5_gn_9_33201 Lactuca sativa HOM05D003987 ORTHO05D004532 2.8e-14 84.0 203 31.0
DCAR_028789 Daucus carota HOM05D003987 ORTHO05D004532 3.7e-14 83.6 210 29.0
AT3G54060 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 4.8e-14 83.2 195 30.8
BcaB02g09232 Brassica carinata HOM05D003987 ORTHO05D004532 4.8e-14 83.2 179 30.7
Duzib128G2001 Durio zibethinus HOM05D003987 ORTHO05D004532 6.3e-14 82.8 230 31.3
BraA05t19770Z Brassica rapa HOM05D003987 ORTHO05D004532 8.2e-14 82.4 163 33.1
A05p08030 Brassica napus HOM05D003987 ORTHO05D004532 1.1e-13 82.0 163 33.7
Cpa.g.sc56.87 Carica papaya HOM05D003987 ORTHO05D004532 1.1e-13 82.0 222 30.6
Ciclev10011513m.g Citrus clementina HOM05D003987 ORTHO05D004532 1.1e-13 82.0 217 33.2
FAN02G3471 Fragaria x ananassa HOM05D003987 ORTHO05D004532 1.1e-13 82.0 110 40.0
EL10Ac8g18936 Beta vulgaris HOM05D003987 ORTHO05D004532 1.4e-13 81.6 228 29.8
Thecc.05G024900 Theobroma cacao HOM05D003987 ORTHO05D004532 1.4e-13 81.6 219 28.8
Oeu044376.1 Olea europaea HOM05D003987 ORTHO05D004532 2.4e-13 80.9 175 33.1
Duzib093G0208 Durio zibethinus HOM05D003987 ORTHO05D004532 3.1e-13 80.5 240 28.8
Aqoxy1G00765 Aquilegia oxysepala HOM05D003987 ORTHO05D004532 4.1e-13 80.1 202 32.2
Cfa017278 Carpinus fangiana HOM05D003987 ORTHO05D004532 4.1e-13 80.1 229 32.3
BcaC02g11934 Brassica carinata HOM05D003987 ORTHO05D004532 6.9e-13 79.3 218 30.7
A07p21960 Brassica napus HOM05D003987 ORTHO05D004532 6.9e-13 79.3 206 30.1
SalBow3G0011 Salvia bowleyana HOM05D003987 ORTHO05D004532 6.9e-13 79.3 202 30.2
Sed0025444 Sechium edule HOM05D003987 ORTHO05D004532 6.9e-13 79.3 189 34.4
THA.LOC104805691 Tarenaya hassleriana HOM05D003987 ORTHO05D004532 1.2e-12 78.6 201 32.8
Cc06_g01840 Coffea canephora HOM05D003987 ORTHO05D004532 1.5e-12 78.2 131 32.8
Prupe.6G268000 Prunus persica HOM05D003987 ORTHO05D004532 2.6e-12 77.4 228 28.1
QL07p027561 Quercus lobata HOM05D003987 ORTHO05D004532 4.5e-12 76.6 207 33.8
BolC4t22577H Brassica oleracea HOM05D003987 ORTHO05D004532 5.9e-12 76.3 198 30.8
BolC4t28137H Brassica oleracea HOM05D003987 ORTHO05D004532 5.9e-12 76.3 104 37.5
BraA07t29878Z Brassica rapa HOM05D003987 ORTHO05D004532 7.7e-12 75.9 209 29.2
DCAR_012161 Daucus carota HOM05D003987 ORTHO05D004532 1.0e-11 75.5 202 32.2
Migut.L01985 Erythranthe guttata HOM05D003987 ORTHO05D004532 1.3e-11 75.1 213 31.0
Phvul.010G006800 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.3e-11 75.1 178 35.4
RcHm_v2.0_Chr3g0464181 Rosa chinensis HOM05D003987 ORTHO05D004532 1.3e-11 75.1 236 29.2
Hma1.2p1_0244F.1_g101070 Hydrangea macrophylla HOM05D003987 ORTHO05D004532 1.7e-11 74.7 129 34.1
Phvul.006G111000 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 2.2e-11 74.3 180 32.8
Phvul.005G150800 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 2.9e-11 73.9 174 32.8
Sp5g08320 Schrenkiella parvula HOM05D003987 ORTHO05D004532 2.9e-11 73.9 90 40.0
Sc22g0004580 Simmondsia chinensis HOM05D003987 ORTHO05D004532 2.9e-11 73.9 204 30.9
Dinv37095 Davidia involucrata HOM05D003987 ORTHO05D004532 3.8e-11 73.6 215 29.3
Solyc10g086750.1 Solanum lycopersicum HOM05D003987 ORTHO05D004532 3.8e-11 73.6 146 33.6
unitig_26.g9099 Utricularia gibba HOM05D003987 ORTHO05D004532 5.0e-11 73.2 182 28.0
Atru.chr8.2120 Acer truncatum HOM05D003987 ORTHO05D004532 6.5e-11 72.8 222 30.6
Thhalv10010371m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 6.5e-11 72.8 207 26.6
Oeu018344.1 Olea europaea HOM05D003987 ORTHO05D004532 6.5e-11 72.8 130 34.6
TAR633G1447 Trochodendron aralioides HOM05D003987 ORTHO05D004532 6.5e-11 72.8 219 29.7
CARHR132510 Cardamine hirsuta HOM05D003987 ORTHO05D004532 8.5e-11 72.4 165 32.7
FvH4_6g12360 Fragaria vesca HOM05D003987 ORTHO05D004532 8.5e-11 72.4 226 31.4
FAN09G0914 Fragaria x ananassa HOM05D003987 ORTHO05D004532 8.5e-11 72.4 110 38.2
Nitab4.5_0000008g0400 Nicotiana tabacum HOM05D003987 ORTHO05D004532 8.5e-11 72.4 107 36.4
COL.COLO4_14650 Corchorus olitorius HOM05D003987 ORTHO05D004532 1.4e-10 71.6 238 30.3
vmacro08611 Vaccinium macrocarpon HOM05D003987 ORTHO05D004532 1.4e-10 71.6 200 29.5
Nitab4.5_0002152g0110 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.9e-10 71.2 133 33.8
unitig_749.g14175 Utricularia gibba HOM05D003987 ORTHO05D004532 1.9e-10 71.2 99 38.4
AL4G34930 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 2.5e-10 70.9 93 40.9
A04p29100 Brassica napus HOM05D003987 ORTHO05D004532 2.5e-10 70.9 99 37.4
MD12G1157700 Malus domestica HOM05D003987 ORTHO05D004532 3.2e-10 70.5 230 26.5
Phvul.010G006900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 3.2e-10 70.5 199 30.2
Oeu009906.1 Olea europaea HOM05D003987 ORTHO05D004532 4.2e-10 70.1 143 32.2
BcaB02g07750 Brassica carinata HOM05D003987 ORTHO05D004532 5.5e-10 69.7 107 38.3
ECA248G1591 Erigeron canadensis HOM05D003987 ORTHO05D004532 5.5e-10 69.7 98 37.8
Nn2g13566 Nelumbo nucifera HOM05D003987 ORTHO05D004532 5.5e-10 69.7 225 25.3
TWI77G0200 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 9.4e-10 68.9 221 29.0
BraA04t18380Z Brassica rapa HOM05D003987 ORTHO05D004532 1.2e-09 68.6 99 36.4
Migut.J00243 Erythranthe guttata HOM05D003987 ORTHO05D004532 1.2e-09 68.6 188 29.8
SGA_v2.0_scaffold75G24988 Striga asiatica HOM05D003987 ORTHO05D004532 1.2e-09 68.6 235 28.9
AUR62028348 Chenopodium quinoa HOM05D003987 ORTHO05D004532 1.6e-09 68.2 202 30.2
MD04G1143500 Malus domestica HOM05D003987 ORTHO05D004532 1.6e-09 68.2 233 27.9
GSVIVG01034033001 Vitis vinifera HOM05D003987 ORTHO05D004532 2.1e-09 67.8 215 28.8
AL5G35070 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 3.6e-09 67.0 204 26.5
CDE09G1167 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 3.6e-09 67.0 186 29.6
BcaC08g44664 Brassica carinata HOM05D003987 ORTHO05D004532 4.7e-09 66.6 118 33.1
AUR62025345 Chenopodium quinoa HOM05D003987 ORTHO05D004532 4.7e-09 66.6 199 30.7
Peaxi162Scf00014g00921 Petunia axillaris HOM05D003987 ORTHO05D004532 4.7e-09 66.6 184 31.0
PGSC0003DMG400019132 Solanum tuberosum HOM05D003987 ORTHO05D004532 6.1e-09 66.2 230 30.4
ATR0618G159 Amborella trichopoda HOM05D003987 ORTHO05D004532 7.9e-09 65.9 207 26.1
Potri.016G109100 Populus trichocarpa HOM05D003987 ORTHO05D004532 7.9e-09 65.9 224 30.4
Aa31LG10G8760 Aethionema arabicum HOM05D003987 ORTHO05D004532 1.8e-08 64.7 204 25.0
Thhalv10016588m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 1.8e-08 64.7 195 28.2
Sabra06G0072400 Salix brachista HOM05D003987 ORTHO05D004532 1.8e-08 64.7 223 26.9
Hund08928 Selenicereus undatus HOM05D003987 ORTHO05D004532 1.8e-08 64.7 203 30.5
Potri.006G094600 Populus trichocarpa HOM05D003987 ORTHO05D004532 2.3e-08 64.3 216 27.3
VMungo1309G3141 Vigna mungo HOM05D014262 ORTHO05D018084 3.0e-08 63.9 175 30.3
TPR.G8224 Trifolium pratense HOM05D003987 ORTHO05D004532 3.9e-08 63.5 135 33.3
PSO339G5295 Papaver somniferum HOM05D003987 ORTHO05D004532 5.2e-08 63.2 227 28.2
Carub.0004s1992 Capsella rubella HOM05D003987 ORTHO05D004532 6.7e-08 62.8 188 29.3
PGSC0003DMG400020336 Solanum tuberosum HOM05D003987 ORTHO05D004532 8.8e-08 62.4 239 28.0
C06p21870 Brassica napus HOM05D003987 ORTHO05D004532 2.0e-07 61.2 206 28.2
PSO384G1037 Papaver somniferum HOM05D003987 ORTHO05D004532 2.0e-07 61.2 194 29.9
AT2G37960 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 2.6e-07 60.8 219 26.5
MBI14_g28607_MAGBIO Magnolia biondii HOM05D003987 ORTHO05D004532 2.6e-07 60.8 213 27.2
Phvul.010G006100 Phaseolus vulgaris HOM05D014262 ORTHO05D004532 3.3e-07 60.5 220 28.6
Peaxi162Scf01302g00045 Petunia axillaris HOM05D003987 ORTHO05D004532 7.4e-07 59.3 193 29.0
CDE02G0690 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 9.7e-07 58.9 215 27.4
HanXRQChr01g0001271 Helianthus annuus HOM05D003987 ORTHO05D004532 1.7e-06 58.2 221 28.5
Sopen09g006640 Solanum pennellii HOM05D003987 ORTHO05D004532 2.8e-06 57.4 255 27.1
Sopen10g036150 Solanum pennellii HOM05D003987 ORTHO05D004532 6.3e-06 56.2 206 27.7
Phvul.008G081900 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 8.2e-06 55.8 126 34.1
Phvul.008G082101 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 8.2e-06 55.8 126 34.1
SEGI_16848 Sequoiadendron giganteum HOM05D003987 ORTHO05D004532 8.2e-06 55.8 168 26.2


User provided reference genes

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