Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G13641 Trifolium pratense HOM05D003057 ORTHO05D003904 1.2e-94 349.7 166 100.0
TPR.G38366 Trifolium pratense HOM05D003057 ORTHO05D003904 2.8e-75 285.4 138 97.8
Lj5g0003986 Lotus japonicus HOM05D003057 ORTHO05D003904 8.9e-58 227.3 161 65.2
Lj2g0002985 Lotus japonicus HOM05D003057 ORTHO05D003904 2.6e-57 225.7 160 66.2
Lj4g0012344 Lotus japonicus HOM05D003057 ORTHO05D003904 2.6e-57 225.7 160 66.2
COL.COLO4_21501 Corchorus olitorius HOM05D003057 ORTHO05D003904 9.9e-57 223.8 161 65.8
TPR.G1746 Trifolium pratense HOM05D003057 ORTHO05D003904 9.9e-57 223.8 161 64.6
COL.COLO4_37503 Corchorus olitorius HOM05D003057 ORTHO05D003904 2.1e-54 216.1 153 64.7
Rhsim11G0002500 Rhododendron simsii HOM05D003057 ORTHO05D003904 2.1e-51 206.1 160 63.1
COL.COLO4_20007 Corchorus olitorius HOM05D003057 ORTHO05D003904 4.0e-50 201.8 160 59.4
COL.COLO4_06022 Corchorus olitorius HOM05D003057 ORTHO05D003904 5.3e-50 201.4 148 62.2
Rhsim02G0047600 Rhododendron simsii HOM05D003057 ORTHO05D003904 5.3e-50 201.4 160 61.2
COL.COLO4_24961 Corchorus olitorius HOM05D003057 ORTHO05D003904 6.9e-50 201.1 148 62.2
Rhsim05G0119600 Rhododendron simsii HOM05D003057 ORTHO05D003904 6.9e-50 201.1 160 58.1
BcaC08g45994 Brassica carinata HOM05D003057 ORTHO05D003904 9.0e-50 200.7 160 58.8
SGA_v2.0_scaffold73G24256 Striga asiatica HOM05D003057 ORTHO05D003904 1.2e-49 200.3 160 59.4
COL.COLO4_10110 Corchorus olitorius HOM05D003057 ORTHO05D003904 4.4e-49 198.4 150 63.3
Rhsim11G0159700 Rhododendron simsii HOM05D003057 ORTHO05D003904 5.8e-49 198.0 160 57.5
BcaC01g02975 Brassica carinata HOM05D003057 ORTHO05D003904 9.9e-49 197.2 160 56.9
COL.COLO4_08929 Corchorus olitorius HOM05D003057 ORTHO05D003904 1.3e-48 196.8 160 58.8
Rhsim10G0170800 Rhododendron simsii HOM05D003057 ORTHO05D003904 1.3e-48 196.8 161 59.6
Rhsim08G0118100 Rhododendron simsii HOM05D003057 ORTHO05D003904 1.7e-48 196.4 160 57.5
RhsimUnG0046200 Rhododendron simsii HOM05D003057 ORTHO05D003904 1.7e-48 196.4 161 59.6
RhsimUnG0099900 Rhododendron simsii HOM05D003057 ORTHO05D003904 1.7e-48 196.4 160 57.5
RhsimUnG0134200 Rhododendron simsii HOM05D003057 ORTHO05D003904 1.7e-48 196.4 161 59.6
PSO170G6610 Papaver somniferum HOM05D003057 ORTHO05D003904 2.2e-48 196.1 160 57.5
PSO724G1375 Papaver somniferum HOM05D003057 ORTHO05D003904 2.2e-48 196.1 160 57.5
PSO210G2781 Papaver somniferum HOM05D003057 ORTHO05D003904 2.9e-48 195.7 160 57.5
PSO832G2073 Papaver somniferum HOM05D003057 ORTHO05D003904 2.9e-48 195.7 160 58.1
PSO017G6481 Papaver somniferum HOM05D003057 ORTHO05D003904 3.8e-48 195.3 160 57.5
Rhsim07G0167300 Rhododendron simsii HOM05D003057 ORTHO05D003904 3.8e-48 195.3 161 58.4
Rhsim09G0038900 Rhododendron simsii HOM05D009719 ORTHO05D003904 4.9e-48 194.9 160 57.5
RhsimUnG0227600 Rhododendron simsii HOM05D003057 ORTHO05D003904 4.9e-48 194.9 161 59.6
AL6G26450 Arabidopsis lyrata HOM05D003057 ORTHO05D003904 6.4e-48 194.5 160 57.5
Hma1.2p1_0622F.1_g190920 Hydrangea macrophylla HOM05D003057 ORTHO05D003904 6.4e-48 194.5 160 56.9
Rhsim01G0115600 Rhododendron simsii HOM05D003057 ORTHO05D003904 4.2e-47 191.8 161 59.0
Rhsim03G0157600 Rhododendron simsii HOM05D003057 ORTHO05D003904 4.2e-47 191.8 160 58.1
ECA234G4294 Erigeron canadensis HOM05D003057 ORTHO05D003904 5.4e-47 191.4 156 57.1
PSO170G5304 Papaver somniferum HOM05D003057 ORTHO05D003904 5.4e-47 191.4 160 56.9
ECA248G1006 Erigeron canadensis HOM05D003057 ORTHO05D003904 1.2e-46 190.3 156 57.1
Rhsim11G0020100 Rhododendron simsii HOM05D003057 ORTHO05D003904 1.2e-46 190.3 152 59.9
PSO675G7321 Papaver somniferum HOM05D003057 ORTHO05D003904 1.6e-46 189.9 160 56.2
Rhsim12G0027300 Rhododendron simsii HOM05D003057 ORTHO05D003904 4.6e-46 188.3 160 55.0
Rhsim02G0188200 Rhododendron simsii HOM05D003057 ORTHO05D003904 6.0e-46 188.0 160 56.2
PSO339G3716 Papaver somniferum HOM05D003057 ORTHO05D003904 7.8e-46 187.6 160 54.4
PSO170G6652 Papaver somniferum HOM05D003057 ORTHO05D003904 3.9e-45 185.3 160 55.6
COL.COLO4_37789 Corchorus olitorius HOM05D003057 ORTHO05D003904 5.1e-45 184.9 138 63.0
PSO017G5767 Papaver somniferum HOM05D003057 ORTHO05D003904 5.1e-45 184.9 160 55.0
Rhsim02G0188400 Rhododendron simsii HOM05D003057 ORTHO05D003904 1.9e-44 183.0 159 54.7
COL.COLO4_07828 Corchorus olitorius HOM05D003057 ORTHO05D003904 2.5e-44 182.6 148 57.4
Rhsim09G0063100 Rhododendron simsii HOM05D003057 ORTHO05D003904 2.5e-44 182.6 160 56.9
PSO017G2586 Papaver somniferum HOM05D003057 ORTHO05D003904 5.6e-44 181.4 160 53.1
PSO151G0074 Papaver somniferum HOM05D003057 ORTHO05D003904 1.3e-43 180.3 160 53.1
COL.COLO4_27567 Corchorus olitorius HOM05D003057 ORTHO05D003904 1.6e-43 179.9 147 57.1
PSO339G0276 Papaver somniferum HOM05D003057 ORTHO05D003904 4.8e-43 178.3 145 57.2
COL.COLO4_37543 Corchorus olitorius HOM05D003057 ORTHO05D003904 1.1e-42 177.2 127 64.6
TWI15G0994 Tripterygium wilfordii HOM05D003057 ORTHO05D003904 2.4e-42 176.0 160 51.2
PSO017G7296 Papaver somniferum HOM05D003057 ORTHO05D003904 4.0e-42 175.3 161 54.0
PSO198G0152 Papaver somniferum HOM05D003057 ORTHO05D003904 1.5e-41 173.3 149 53.7
PSO761G0015 Papaver somniferum HOM05D003057 ORTHO05D003904 2.0e-41 172.9 161 54.0
PSO063G0536 Papaver somniferum HOM05D003057 ORTHO05D003904 5.8e-41 171.4 161 54.0
PSO357G0662 Papaver somniferum HOM05D003057 ORTHO05D003904 5.8e-41 171.4 161 53.4
PSO478G2060 Papaver somniferum HOM05D003057 ORTHO05D003904 1.3e-40 170.2 134 59.0
PSO761G0317 Papaver somniferum HOM05D003057 ORTHO05D003904 1.3e-40 170.2 161 50.9
SGA_v2.0_scaffold17G08157 Striga asiatica HOM05D003057 ORTHO05D003904 1.3e-40 170.2 160 53.1
TPR.G14797 Trifolium pratense HOM05D003057 ORTHO05D003904 1.7e-40 169.9 162 55.6
PSO017G3866 Papaver somniferum HOM05D003057 ORTHO05D003904 6.4e-40 167.9 132 59.1
PSO013G0378 Papaver somniferum HOM05D003057 ORTHO05D003904 1.1e-39 167.2 159 52.2
BcaC04g21929 Brassica carinata HOM05D003057 ORTHO05D003904 5.4e-39 164.9 152 53.3
Ah.15g097480 Amaranthus hybridus HOM05D003057 ORTHO05D003904 7.9e-38 161.0 151 52.3
COL.COLO4_20032 Corchorus olitorius HOM05D003057 ORTHO05D003904 7.9e-38 161.0 161 51.6
PSO384G2563 Papaver somniferum HOM05D003057 ORTHO05D003904 1.0e-37 160.6 160 50.0
PSO170G5731 Papaver somniferum HOM05D003057 ORTHO05D003904 2.3e-37 159.5 132 56.8
Ah.07g202550 Amaranthus hybridus HOM05D003057 ORTHO05D003904 3.9e-37 158.7 151 50.3
QL01p049124 Quercus lobata HOM05D003057 ORTHO05D003904 5.1e-37 158.3 160 46.2
Ah.03g140530 Amaranthus hybridus HOM05D003057 ORTHO05D003904 6.7e-37 157.9 151 51.0
Ah.14g084280 Amaranthus hybridus HOM05D003057 ORTHO05D003904 6.7e-37 157.9 151 51.0
Ah.03g145610 Amaranthus hybridus HOM05D003057 ORTHO05D003904 8.7e-37 157.5 151 51.0
Ah.07g196960 Amaranthus hybridus HOM05D003057 ORTHO05D003904 8.7e-37 157.5 151 50.3
Ah.13g068770 Amaranthus hybridus HOM05D003057 ORTHO05D003904 8.7e-37 157.5 151 51.0
Ah.03g142690 Amaranthus hybridus HOM05D003057 ORTHO05D003904 1.1e-36 157.1 151 49.7
Ah.06g187260 Amaranthus hybridus HOM05D003057 ORTHO05D003904 1.1e-36 157.1 151 51.0
Ah.13g069490 Amaranthus hybridus HOM05D003057 ORTHO05D003904 2.5e-36 156.0 151 49.0
Ah.01g013430 Amaranthus hybridus HOM05D003057 ORTHO05D003904 5.6e-36 154.8 151 49.0
Ah.04g158790 Amaranthus hybridus HOM05D003057 ORTHO05D003904 7.4e-36 154.5 151 49.7
Ah.04g155590 Amaranthus hybridus HOM05D003057 ORTHO05D003904 9.6e-36 154.1 156 47.4
Ah.06g184390 Amaranthus hybridus HOM05D003057 ORTHO05D003904 9.6e-36 154.1 151 48.3
Ah.07g201230 Amaranthus hybridus HOM05D003057 ORTHO05D003904 1.3e-35 153.7 151 50.3
AL5G22340 Arabidopsis lyrata HOM05D003057 ORTHO05D003904 1.3e-35 153.7 132 56.8
Ah.01g017940 Amaranthus hybridus HOM05D003057 ORTHO05D003904 3.7e-35 152.1 156 47.4
Ah.10g026650 Amaranthus hybridus HOM05D003057 ORTHO05D003904 6.2e-35 151.4 151 48.3
TPR.G34813 Trifolium pratense HOM05D003057 ORTHO05D003904 1.8e-34 149.8 161 46.0
Ah.04g162690 Amaranthus hybridus HOM05D003057 ORTHO05D003904 3.1e-34 149.1 151 50.3
PSO832G3916 Papaver somniferum HOM05D003057 ORTHO05D003904 3.1e-34 149.1 144 53.5
Ah.07g202070 Amaranthus hybridus HOM05D003057 ORTHO05D003904 9.0e-34 147.5 164 44.5
PSO675G8645 Papaver somniferum HOM05D003057 ORTHO05D003904 1.2e-33 147.1 132 52.3
Ah.16g106200 Amaranthus hybridus HOM05D003057 ORTHO05D003904 2.0e-33 146.4 152 48.7
Ah.06g181680 Amaranthus hybridus HOM05D003057 ORTHO05D003904 4.5e-33 145.2 151 48.3
PSO170G1938 Papaver somniferum HOM05D003057 ORTHO05D003904 5.8e-33 144.8 157 47.1
Ah.01g023980 Amaranthus hybridus HOM05D003057 ORTHO05D003904 1.7e-32 143.3 151 47.7
PSO063G5105 Papaver somniferum HOM05D003057 ORTHO05D003904 1.7e-32 143.3 127 54.3
PSO357G0652 Papaver somniferum HOM05D003057 ORTHO05D003904 8.4e-32 141.0 160 45.0
QL05p017993 Quercus lobata HOM05D003057 ORTHO05D003904 1.4e-31 140.2 148 48.0
TWI31G1500 Tripterygium wilfordii HOM05D003057 ORTHO05D003904 1.4e-31 140.2 123 52.8
COL.COLO4_04492 Corchorus olitorius HOM05D003057 ORTHO05D003904 1.6e-30 136.7 116 56.9
SGA_v2.0_scaffold16G07775 Striga asiatica HOM05D003057 ORTHO05D003904 2.1e-30 136.3 149 47.0
PSO170G6344 Papaver somniferum HOM05D003057 ORTHO05D003904 4.6e-30 135.2 157 44.6
PSO384G4427 Papaver somniferum HOM05D003057 ORTHO05D003904 4.6e-30 135.2 157 44.6
COL.COLO4_22596 Corchorus olitorius HOM05D003057 ORTHO05D003904 3.0e-29 132.5 96 64.6
Ah.06g181920 Amaranthus hybridus HOM05D003057 ORTHO05D003904 6.7e-29 131.3 159 40.9
PSO339G6256 Papaver somniferum HOM05D003057 ORTHO05D003904 8.7e-29 131.0 160 43.8
Rhsim06G0137900 Rhododendron simsii HOM05D003057 ORTHO05D003904 1.1e-28 130.6 102 58.8
Ah.11g045640 Amaranthus hybridus HOM05D003057 ORTHO05D003904 1.9e-28 129.8 159 40.3
Ah.16g103350 Amaranthus hybridus HOM05D003057 ORTHO05D003904 2.5e-28 129.4 159 40.3
ECA234G0491 Erigeron canadensis HOM05D003057 ORTHO05D003904 2.5e-28 129.4 102 60.8
PSO210G4431 Papaver somniferum HOM05D003057 ORTHO05D003904 5.7e-28 128.3 107 54.2
Ah.03g144340 Amaranthus hybridus HOM05D003057 ORTHO05D003904 7.4e-28 127.9 151 41.7
Ah.10g032920 Amaranthus hybridus HOM05D003057 ORTHO05D003904 1.3e-27 127.1 151 41.7
Ah.13g067120 Amaranthus hybridus HOM05D003057 ORTHO05D003904 1.3e-27 127.1 151 41.7
PSO384G0803 Papaver somniferum HOM05D003057 ORTHO05D003904 1.3e-27 127.1 160 44.4
Ah.04g164590 Amaranthus hybridus HOM05D003057 ORTHO05D003904 2.8e-27 125.9 159 39.6
Ah.06g181160 Amaranthus hybridus HOM05D003057 ORTHO05D003904 4.8e-27 125.2 151 41.1
Ah.06g182610 Amaranthus hybridus HOM05D003057 ORTHO05D003904 1.4e-26 123.6 150 41.3
Ah.11g046560 Amaranthus hybridus HOM05D003057 ORTHO05D003904 1.4e-26 123.6 151 41.1
Ah.07g201280 Amaranthus hybridus HOM05D003057 ORTHO05D003904 1.8e-26 123.2 151 39.7
Ah.05g175220 Amaranthus hybridus HOM05D003057 ORTHO05D003904 3.1e-26 122.5 151 40.4
COL.COLO4_31045 Corchorus olitorius HOM05D003057 ORTHO05D003904 3.1e-26 122.5 145 44.1
TPR.G14789 Trifolium pratense HOM05D003057 ORTHO05D003904 3.1e-26 122.5 88 65.9
Hma1.2p1_1282F.1_g272710 Hydrangea macrophylla HOM05D003057 ORTHO05D003904 4.0e-26 122.1 131 46.6
Ah.01g002160 Amaranthus hybridus HOM05D003057 ORTHO05D003904 5.3e-26 121.7 151 39.7
Ah.03g143550 Amaranthus hybridus HOM05D003057 ORTHO05D003904 5.3e-26 121.7 159 39.0
Ah.11g041830 Amaranthus hybridus HOM05D003057 ORTHO05D003904 6.9e-26 121.3 151 39.7
Ah.07g206230 Amaranthus hybridus HOM05D003057 ORTHO05D003904 1.2e-25 120.6 151 39.1
PSO210G0544 Papaver somniferum HOM05D003057 ORTHO05D003904 2.0e-25 119.8 102 56.9
Ah.10g032220 Amaranthus hybridus HOM05D003057 ORTHO05D003904 2.6e-25 119.4 151 39.1
COL.COLO4_09308 Corchorus olitorius HOM05D003057 ORTHO05D003904 4.5e-25 118.6 96 59.4
PSO339G3646 Papaver somniferum HOM05D003057 ORTHO05D003904 5.8e-25 118.2 101 50.5
COL.COLO4_35241 Corchorus olitorius HOM05D003057 ORTHO05D003904 1.7e-24 116.7 161 41.0
PSO339G2793 Papaver somniferum HOM05D003057 ORTHO05D003904 8.4e-24 114.4 103 56.3
AUR62026174 Chenopodium quinoa HOM05D003057 ORTHO05D003904 3.2e-23 112.5 148 41.2
PSO832G1677 Papaver somniferum HOM05D003057 ORTHO05D003904 4.2e-23 112.1 102 53.9
TPR.G33575 Trifolium pratense HOM05D003057 ORTHO05D003904 4.2e-23 112.1 93 52.7
CAN.G960.86 Capsicum annuum HOM05D003057 ORTHO05D003904 1.2e-22 110.5 102 50.0
PSO210G2682 Papaver somniferum HOM05D003057 ORTHO05D003904 2.1e-22 109.8 97 55.7
TPR.G9017 Trifolium pratense HOM05D003057 ORTHO05D003904 3.5e-22 109.0 78 60.3
PSO675G0308 Papaver somniferum HOM05D003057 ORTHO05D003904 7.9e-22 107.8 97 54.6
Medtr7g060420 Medicago truncatula HOM05D000645 ORTHO05D000494 1.8e-21 106.7 104 53.8
Ah.15g097160 Amaranthus hybridus HOM05D003057 ORTHO05D003904 2.3e-21 106.3 113 47.8
TPR.G28675 Trifolium pratense HOM05D003057 ORTHO05D003904 6.7e-21 104.8 94 54.3
PSO339G0160 Papaver somniferum HOM05D003057 ORTHO05D003904 1.1e-20 104.0 101 52.5
COL.COLO4_37623 Corchorus olitorius HOM05D003057 ORTHO05D003904 7.4e-20 101.3 68 58.8
PGSC0003DMG400002198 Solanum tuberosum HOM05D003057 ORTHO05D003904 2.8e-19 99.4 100 49.0
TPR.G29392 Trifolium pratense HOM05D003057 ORTHO05D003904 1.8e-18 96.7 87 52.9
Rhsim01G0178000 Rhododendron simsii HOM05D003057 ORTHO05D003904 3.4e-17 92.4 78 53.8
Os06g0523701 Oryza sativa ssp. japonica HOM05D003057 ORTHO05D003904 4.5e-17 92.0 83 51.8
PSO017G4793 Papaver somniferum HOM05D003057 ORTHO05D003904 4.5e-17 92.0 102 49.0
Rhsim08G0101000 Rhododendron simsii HOM05D003057 ORTHO05D003904 4.5e-17 92.0 67 61.2
PSO478G2424 Papaver somniferum HOM05D003057 ORTHO05D003904 1.3e-16 90.5 102 48.0
PSO832G4354 Papaver somniferum HOM05D003057 ORTHO05D003904 2.2e-16 89.7 68 58.8
PSO017G4412 Papaver somniferum HOM05D003057 ORTHO05D003904 2.9e-16 89.4 115 46.1
COL.COLO4_35222 Corchorus olitorius HOM05D003057 ORTHO05D003904 7.2e-15 84.7 72 61.1
CAN.G523.32 Capsicum annuum HOM05D002887 ORTHO05D003159 1.2e-14 84.0 60 58.3
PSO384G2001 Papaver somniferum HOM05D003057 ORTHO05D003904 4.6e-14 82.0 83 45.8
Duzib205G1595 Durio zibethinus HOM05D003057 ORTHO05D003904 5.3e-10 68.6 160 30.0
PSO170G4809 Papaver somniferum HOM05D003057 ORTHO05D003904 2.2e-08 63.2 55 56.4
PSO063G5055 Papaver somniferum HOM05D003057 ORTHO05D003904 3.2e-07 59.3 54 53.7
Hma1.2p1_0035F.1_g021680 Hydrangea macrophylla HOM05D003057 ORTHO05D003904 1.2e-06 57.4 50 54.0
COL.COLO4_30277 Corchorus olitorius HOM05D003057 ORTHO05D003904 2.7e-06 56.2 34 70.6
AUR62022531 Chenopodium quinoa HOM05D000023 ORTHO05D000014 7.9e-06 54.7 65 40.0


User provided reference genes

Program Settings