Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G13621 Trifolium pratense HOM05D004551 ORTHO05D005262 1.9e-36 155.2 72 100.0
Glyma.02G308400 Glycine max HOM05D004551 ORTHO05D005262 6.3e-16 87.0 40 95.0
Glyma.13G339700 Glycine max HOM05D004551 ORTHO05D005262 6.3e-16 87.0 40 95.0
Lj3g0011983 Lotus japonicus HOM05D004551 ORTHO05D005262 6.3e-16 87.0 40 95.0
HanXRQChr08g0237601 Helianthus annuus HOM05D004551 ORTHO05D005262 8.2e-16 86.7 59 69.5
MD03G1080700 Malus domestica HOM05D004551 ORTHO05D005262 8.2e-16 86.7 59 69.5
QL02p079044 Quercus lobata HOM05D004551 ORTHO05D005262 8.2e-16 86.7 39 94.9
QL02p091823 Quercus lobata HOM05D000741 ORTHO05D000506 8.2e-16 86.7 39 94.9
HanXRQChr09g0243371 Helianthus annuus HOM05D004551 ORTHO05D005262 1.1e-15 86.3 59 69.5
HanXRQChr09g0243381 Helianthus annuus HOM05D004551 ORTHO05D005262 1.1e-15 86.3 59 69.5
Lsat_1_v5_gn_9_25241 Lactuca sativa HOM05D004551 ORTHO05D005262 1.1e-15 86.3 59 69.5
arahy.Tifrunner.gnm1.ann1.S44GTI Arachis hypogaea HOM05D004551 ORTHO05D005262 1.4e-15 85.9 40 92.5
Lj4g0001727 Lotus japonicus HOM05D004551 ORTHO05D005262 1.4e-15 85.9 40 92.5
TPR.G6876 Trifolium pratense HOM05D004551 ORTHO05D005262 1.8e-15 85.5 40 92.5
arahy.Tifrunner.gnm1.ann1.CMV3ZL Arachis hypogaea HOM05D004551 ORTHO05D005262 3.1e-15 84.7 40 90.0
Ca_01298_v3 Cicer arietinum L. HOM05D004551 ORTHO05D005262 3.1e-15 84.7 40 90.0
Dinv35533 Davidia involucrata HOM05D004551 ORTHO05D005262 3.1e-15 84.7 59 69.5
Migut.J00249 Erythranthe guttata HOM05D004551 ORTHO05D005262 4.1e-15 84.3 49 75.5
HanXRQChr02g0055991 Helianthus annuus HOM05D004551 ORTHO05D005262 4.1e-15 84.3 59 67.8
MBI05_g10286_MAGBIO Magnolia biondii HOM05D004551 ORTHO05D005262 4.1e-15 84.3 40 92.5
Prupe.6G065200 Prunus persica HOM05D004551 ORTHO05D005262 4.1e-15 84.3 59 66.1
Migut.L01982 Erythranthe guttata HOM05D004551 ORTHO05D005262 5.3e-15 84.0 49 73.5
Hma1.2p1_1521F.1_g288710 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 5.3e-15 84.0 59 67.8
Glyma.14G004700 Glycine max HOM05D004551 ORTHO05D005262 6.9e-15 83.6 40 90.0
Lalb_Chr24g0397121 Lupinus albus HOM05D004551 ORTHO05D005262 6.9e-15 83.6 40 87.5
Phvul.008G288300 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 6.9e-15 83.6 40 87.5
SalBow1G6960 Salvia bowleyana HOM05D004551 ORTHO05D005262 9.0e-15 83.2 49 73.5
Glyma.15G034700 Glycine max HOM05D004551 ORTHO05D005262 1.2e-14 82.8 40 90.0
Oeu017418.1 Olea europaea HOM05D004551 ORTHO05D005262 1.2e-14 82.8 59 66.1
Oeu036200.1 Olea europaea HOM05D004551 ORTHO05D005262 1.2e-14 82.8 59 66.1
PSO339G1751 Papaver somniferum HOM05D004551 ORTHO05D005262 1.2e-14 82.8 40 87.5
PSO384G2886 Papaver somniferum HOM05D004551 ORTHO05D005262 1.2e-14 82.8 40 87.5
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 1.2e-14 82.8 39 89.7
Lalb_Chr22g0352421 Lupinus albus HOM05D004551 ORTHO05D005262 1.5e-14 82.4 40 85.0
CSS0032515 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 2.0e-14 82.0 59 66.1
Rhsim04G0164100 Rhododendron simsii HOM05D004551 ORTHO05D005262 2.6e-14 81.6 49 73.5
Glyma.15G229800 Glycine max HOM05D004551 ORTHO05D005262 4.5e-14 80.9 40 87.5
CDE02G0008 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 7.7e-14 80.1 40 82.5
CDE04G2361 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 7.7e-14 80.1 40 82.5
Psat5g285840 Pisum sativum HOM05D004551 ORTHO05D005262 1.0e-13 79.7 37 89.2
Phvul.L008843 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 1.3e-13 79.3 40 85.0
FvH4_3g37430 Fragaria vesca HOM05D004551 ORTHO05D005262 1.7e-13 79.0 59 62.7
FAN11G1128 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.7e-13 79.0 59 62.7
FAN16G1443 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.7e-13 79.0 59 62.7
FAN21G1099 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.7e-13 79.0 59 62.7
FAN25G2220 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.7e-13 79.0 59 62.7
Hund18875 Selenicereus undatus HOM05D004551 ORTHO05D005262 1.7e-13 79.0 59 62.7
FAN16G2867 Fragaria x ananassa HOM05D004551 ORTHO05D005262 2.2e-13 78.6 58 62.1
unitig_578.g15888 Utricularia gibba HOM05D004551 ORTHO05D005262 2.2e-13 78.6 40 82.5
unitig_8.g4441 Utricularia gibba HOM05D004551 ORTHO05D005262 2.2e-13 78.6 44 75.0
Cc06_g01910 Coffea canephora HOM05D004551 ORTHO05D005262 5.0e-13 77.4 59 62.7
THA.LOC104800711 Tarenaya hassleriana HOM05D004551 ORTHO05D005262 6.5e-13 77.0 40 80.0
Aa31LG5G6930 Aethionema arabicum HOM05D004551 ORTHO05D005262 8.5e-13 76.6 40 77.5
Pp3c1_35930 Physcomitrium patens HOM05D004551 ORTHO05D005262 1.1e-12 76.3 39 74.4
BcaB02g10259 Brassica carinata HOM05D004551 ORTHO05D005262 1.4e-12 75.9 38 78.9
TWI75G0664 Tripterygium wilfordii HOM05D004551 ORTHO05D005262 1.4e-12 75.9 40 77.5
A04p22520 Brassica napus HOM05D004551 ORTHO05D005262 1.9e-12 75.5 59 57.6
BolC4t27387H Brassica oleracea HOM05D004551 ORTHO05D005262 1.9e-12 75.5 54 59.3
BraA04t17797Z Brassica rapa HOM05D004551 ORTHO05D005262 1.9e-12 75.5 49 63.3
Carub.0004s1058 Capsella rubella HOM05D004551 ORTHO05D005262 1.9e-12 75.5 40 75.0
Thhalv10017490m.g Eutrema salsugineum HOM05D004551 ORTHO05D005262 1.9e-12 75.5 59 57.6
Sp4g12260 Schrenkiella parvula HOM05D004551 ORTHO05D005262 1.9e-12 75.5 59 57.6
EL10Ac7g16095 Beta vulgaris HOM05D004551 ORTHO05D005262 2.5e-12 75.1 59 61.0
Medtr2g097870 Medicago truncatula HOM05D004551 ORTHO05D005262 3.2e-12 74.7 35 88.6
Nitab4.5_0002152g0070 Nicotiana tabacum HOM05D004551 ORTHO05D005262 3.2e-12 74.7 37 81.1
SMO172G0051 Selaginella moellendorffii HOM05D004551 ORTHO05D005262 3.2e-12 74.7 39 79.5
Peaxi162Scf01302g00041 Petunia axillaris HOM05D004551 ORTHO05D005262 4.2e-12 74.3 56 60.7
AL4G24240 Arabidopsis lyrata HOM05D004551 ORTHO05D005262 5.5e-12 73.9 59 55.9
AT2G29530 Arabidopsis thaliana HOM05D004551 ORTHO05D005262 5.5e-12 73.9 59 55.9
CARHR122870 Cardamine hirsuta HOM05D004551 ORTHO05D005262 5.5e-12 73.9 59 55.9
Ciclev10029702m.g Citrus clementina HOM05D004551 ORTHO05D005262 5.5e-12 73.9 41 80.5
A05p15870 Brassica napus HOM05D004551 ORTHO05D005262 7.2e-12 73.6 40 72.5
BraA05t20500Z Brassica rapa HOM05D004551 ORTHO05D005262 7.2e-12 73.6 40 72.5
Solyc09g011760.3 Solanum lycopersicum HOM05D004551 ORTHO05D005262 7.2e-12 73.6 37 81.1
Sopen09g006580 Solanum pennellii HOM05D004551 ORTHO05D005262 7.2e-12 73.6 37 81.1
PGSC0003DMG402020339 Solanum tuberosum HOM05D004551 ORTHO05D005262 7.2e-12 73.6 37 81.1
C04p21310 Brassica napus HOM05D004551 ORTHO05D005262 9.4e-12 73.2 38 73.7
BolC4t23660H Brassica oleracea HOM05D004551 ORTHO05D005262 9.4e-12 73.2 38 73.7
Gohir.A03G047200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 9.4e-12 73.2 41 78.0
Gohir.A05G091300 Gossypium hirsutum HOM05D004551 ORTHO05D005262 9.4e-12 73.2 41 78.0
Gohir.D03G120000 Gossypium hirsutum HOM05D004551 ORTHO05D005262 9.4e-12 73.2 41 78.0
Gohir.D05G092200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 9.4e-12 73.2 41 78.0
Gorai.003G126500 Gossypium raimondii HOM05D004551 ORTHO05D005262 9.4e-12 73.2 41 78.0
Zm00001eb063090 Zea mays HOM05D004551 ORTHO05D005262 9.4e-12 73.2 40 80.0
CAN.G978.3 Capsicum annuum HOM05D004551 ORTHO05D005262 1.2e-11 72.8 37 78.4
Thecc.09G309400 Theobroma cacao HOM05D004551 ORTHO05D005262 1.2e-11 72.8 41 78.0
Gorai.009G094700 Gossypium raimondii HOM05D004551 ORTHO05D005262 2.7e-11 71.6 41 75.6
Zm00001eb211450 Zea mays HOM05D004551 ORTHO05D005262 2.7e-11 71.6 40 77.5
Duzib168G2386 Durio zibethinus HOM05D004551 ORTHO05D005262 3.6e-11 71.2 41 75.6
CiPaw.13G084300 Carya illinoinensis HOM05D004551 ORTHO05D005262 6.1e-11 70.5 59 61.0
Os07g0243100 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 7.9e-11 70.1 49 65.3
QL01p028907 Quercus lobata HOM05D004551 ORTHO05D005262 7.9e-11 70.1 58 60.3
COL.COLO4_19068 Corchorus olitorius HOM05D004551 ORTHO05D005262 1.0e-10 69.7 41 73.2
Mapoly0052s0053 Marchantia polymorpha HOM05D004551 ORTHO05D005262 1.8e-10 68.9 37 70.3
vmacro08615 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 1.8e-10 68.9 41 73.2
ClCG03G001090 Citrullus lanatus HOM05D004551 ORTHO05D005262 2.3e-10 68.6 59 59.3
MELO3C020586.2 Cucumis melo HOM05D004551 ORTHO05D005262 2.3e-10 68.6 59 59.3
CsaV3_1G035840 Cucumis sativus L. HOM05D004551 ORTHO05D005262 2.3e-10 68.6 59 59.3
MD11G1085200 Malus domestica HOM05D004551 ORTHO05D005262 3.0e-10 68.2 59 57.6
Potri.009G039600 Populus trichocarpa HOM05D004551 ORTHO05D005262 3.0e-10 68.2 40 67.5
CBR_g3168 Chara braunii HOM05D004551 ORTHO05D005262 3.9e-10 67.8 51 52.9
GSVIVG01024832001 Vitis vinifera HOM05D004551 ORTHO05D005262 3.9e-10 67.8 59 59.3
DCAR_007410 Daucus carota HOM05D004551 ORTHO05D005262 5.1e-10 67.4 40 70.0
Potri.001G246500 Populus trichocarpa HOM05D004551 ORTHO05D005262 6.7e-10 67.0 40 65.0
C04p58670 Brassica napus HOM05D004551 ORTHO05D005262 8.8e-10 66.6 71 47.9
CSS0004921 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 8.8e-10 66.6 59 57.6
CiPaw.14G063000 Carya illinoinensis HOM05D004551 ORTHO05D005262 1.1e-09 66.2 59 57.6
Sed0000742 Sechium edule HOM05D004551 ORTHO05D005262 1.1e-09 66.2 40 72.5
Cc01_g13610 Coffea canephora HOM05D004551 ORTHO05D005262 1.5e-09 65.9 59 55.9
Ah.15g090420 Amaranthus hybridus HOM05D004551 ORTHO05D005262 2.0e-09 65.5 45 60.0
AagrBONN_evm.TU.Sc2ySwM_117.3522 Anthoceros agrestis HOM05D004551 ORTHO05D005262 2.0e-09 65.5 40 62.5
Sopen06g001810 Solanum pennellii HOM05D004551 ORTHO05D005262 2.0e-09 65.5 40 70.0
Hma1.2p1_0543F.1_g175360 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 2.5e-09 65.1 59 55.9
CANSAT54G1854 Cannabis sativa HOM05D004551 ORTHO05D005262 3.3e-09 64.7 59 55.9
Solyc06g005840.4 Solanum lycopersicum HOM05D004551 ORTHO05D005262 3.3e-09 64.7 40 70.0
PGSC0003DMG400020830 Solanum tuberosum HOM05D004551 ORTHO05D005262 3.3e-09 64.7 40 70.0
Manes.02G124000 Manihot esculenta HOM05D004551 ORTHO05D005262 4.3e-09 64.3 59 52.5
EL10Ac7g17098 Beta vulgaris HOM05D004551 ORTHO05D005262 5.7e-09 63.9 45 60.0
Manes.01G166600 Manihot esculenta HOM05D004551 ORTHO05D005262 9.7e-09 63.2 59 52.5
Nn2g13555 Nelumbo nucifera HOM05D004551 ORTHO05D005262 1.7e-08 62.4 59 54.2
Dinv34317 Davidia involucrata HOM05D004551 ORTHO05D005262 2.2e-08 62.0 59 52.5
Aqoxy1G00774 Aquilegia oxysepala HOM05D004551 ORTHO05D005262 6.3e-08 60.5 51 54.9
MD02G1278800 Malus domestica HOM05D004551 ORTHO05D005262 8.2e-08 60.1 36 69.4
Cre12.g514900 Chlamydomonas reinhardtii HOM05D004551 ORTHO05D005262 1.1e-07 59.7 43 55.8
RcHm_v2.0_Chr5g0067321 Rosa chinensis HOM05D004551 ORTHO05D005262 1.1e-07 59.7 59 50.8
MCO07G332 Micromonas commoda HOM05D004551 ORTHO05D005262 1.4e-07 59.3 34 58.8
Sc12g0001090 Simmondsia chinensis HOM05D004551 ORTHO05D005262 2.4e-07 58.5 59 50.8
Actinidia08554 Actinidia chinensis HOM05D004551 ORTHO05D005262 5.3e-07 57.4 59 50.8
Sed0006275 Sechium edule HOM05D004551 ORTHO05D005262 6.9e-07 57.0 36 66.7
Eucgr.B02289 Eucalyptus grandis HOM05D004551 ORTHO05D005262 2.6e-06 55.1 59 49.2
Dinv17073 Davidia involucrata HOM05D004551 ORTHO05D005262 3.4e-06 54.7 43 60.5
Dinv43017 Davidia involucrata HOM05D004551 ORTHO05D005262 3.4e-06 54.7 43 60.5
Os03g0825400 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 5.9e-06 53.9 40 60.0


User provided reference genes

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