Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G13600 Trifolium pratense HOM05D003662 ORTHO05D001824 3.1e-40 167.9 80 100.0
TPR.G13626 Trifolium pratense HOM05D003662 ORTHO05D001824 5.9e-31 137.1 68 94.1
Psat1g216760 Pisum sativum HOM05D003662 ORTHO05D001824 1.1e-29 132.9 68 89.7
Psat4g074000 Pisum sativum HOM05D004029 ORTHO05D004613 2.1e-28 128.6 68 86.8
VMungo0540G1102 Vigna mungo HOM05D003662 ORTHO05D001824 3.0e-27 124.8 64 89.1
Glyma.08G179400 Glycine max HOM05D003662 ORTHO05D001824 8.8e-27 123.2 63 88.9
Glyma.15G053000 Glycine max HOM05D003662 ORTHO05D001824 8.8e-27 123.2 64 87.5
Medtr2g008750 Medicago truncatula HOM05D003662 ORTHO05D001824 1.5e-26 122.5 64 85.9
Phvul.006G206900 Phaseolus vulgaris HOM05D003662 ORTHO05D001824 1.5e-26 122.5 64 87.5
Ca_00131_v3 Cicer arietinum L. HOM05D003662 ORTHO05D001824 2.5e-26 121.7 64 87.5
Lj6g0024827 Lotus japonicus HOM05D003662 ORTHO05D001824 3.1e-24 114.8 64 81.2
Psat3g119640 Pisum sativum HOM05D003662 ORTHO05D001824 3.1e-24 114.8 61 86.9
Glyma.08G073300 Glycine max HOM05D003662 ORTHO05D001824 4.1e-24 114.4 65 83.1
Lj4g0002764 Lotus japonicus HOM05D003662 ORTHO05D001824 5.3e-24 114.0 65 80.0
Lj4g0005319 Lotus japonicus HOM05D003662 ORTHO05D001824 5.3e-24 114.0 65 80.0
Lj4g0001073 Lotus japonicus HOM05D003662 ORTHO05D001824 3.4e-23 111.3 65 78.5
Glyma.05G118300 Glycine max HOM05D003662 ORTHO05D001824 1.0e-22 109.8 65 80.0
arahy.Tifrunner.gnm1.ann1.TKBB16 Arachis hypogaea HOM05D003662 ORTHO05D001824 1.3e-22 109.4 65 80.0
arahy.Tifrunner.gnm1.ann1.9W20Y7 Arachis hypogaea HOM05D003662 ORTHO05D001824 1.9e-21 105.5 64 76.6
Ca_18346_v3 Cicer arietinum L. HOM05D003662 ORTHO05D001824 2.7e-20 101.7 63 74.6
Lalb_Chr20g0123061 Lupinus albus HOM05D003662 ORTHO05D001824 1.8e-19 99.0 58 81.0
Prupe.8G062200 Prunus persica HOM05D003662 ORTHO05D001824 2.3e-19 98.6 77 64.9
Lalb_Chr10g0097751 Lupinus albus HOM05D003662 ORTHO05D001824 5.1e-19 97.4 64 70.3
Lalb_Chr04g0256571 Lupinus albus HOM05D003662 ORTHO05D001824 6.7e-19 97.1 65 72.3
Lalb_Chr17g0340141 Lupinus albus HOM05D003662 ORTHO05D001824 3.3e-18 94.7 64 68.8
Psat4g170200 Pisum sativum HOM05D003662 ORTHO05D001824 7.4e-18 93.6 48 87.5
Medtr4g094248 Medicago truncatula HOM05D003662 ORTHO05D001824 9.7e-18 93.2 63 71.4
Atru.chr6.854 Acer truncatum HOM05D003662 ORTHO05D001824 1.8e-16 89.0 77 57.1
Atru.chr6.858 Acer truncatum HOM05D003662 ORTHO05D001824 1.8e-16 89.0 77 57.1
Cpa.g.sc42.69 Carica papaya HOM05D003662 ORTHO05D001824 2.0e-15 85.5 76 56.6
Dinv24197 Davidia involucrata HOM05D003662 ORTHO05D001824 3.5e-15 84.7 76 56.6
Potri.001G205800 Populus trichocarpa HOM05D003662 ORTHO05D001824 3.5e-15 84.7 80 57.5
GSVIVG01003080001 Vitis vinifera HOM05D003662 ORTHO05D001824 3.5e-15 84.7 79 54.4
Thecc.02G139400 Theobroma cacao HOM05D003662 ORTHO05D001824 5.9e-15 84.0 77 53.2
Duzib052G1087 Durio zibethinus HOM05D003662 ORTHO05D001824 7.7e-15 83.6 84 51.2
Psat7g098600 Pisum sativum HOM05D003662 ORTHO05D001824 7.7e-15 83.6 60 65.0
Gohir.D04G154500 Gossypium hirsutum HOM05D003662 ORTHO05D001824 2.2e-14 82.0 77 54.5
Gohir.D12G015200 Gossypium hirsutum HOM05D003662 ORTHO05D001824 2.2e-14 82.0 77 54.5
Gorai.008G015300 Gossypium raimondii HOM05D003662 ORTHO05D001824 2.2e-14 82.0 77 54.5
Gorai.012G141800 Gossypium raimondii HOM05D003662 ORTHO05D001824 2.2e-14 82.0 77 54.5
Gohir.A12G014800 Gossypium hirsutum HOM05D003662 ORTHO05D001824 2.9e-14 81.6 77 54.5
Manes.06G010600 Manihot esculenta HOM05D003662 ORTHO05D001824 3.8e-14 81.3 76 56.6
CiPaw.05G036400 Carya illinoinensis HOM05D003662 ORTHO05D001824 5.0e-14 80.9 77 53.2
vmacro01822 Vaccinium macrocarpon HOM05D003662 ORTHO05D001824 8.5e-14 80.1 60 61.7
Actinidia00263 Actinidia chinensis HOM05D003662 ORTHO05D001824 1.1e-13 79.7 75 52.0
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 1.1e-13 79.7 42 83.3
Rhsim11G0136400 Rhododendron simsii HOM05D003662 ORTHO05D001824 1.1e-13 79.7 63 60.3
CSS0002395 Camellia sinensis var. sinensis HOM05D003662 ORTHO05D001824 1.9e-13 79.0 69 56.5
Ciclev10027956m.g Citrus clementina HOM05D003662 ORTHO05D001824 1.9e-13 79.0 71 53.5
Gohir.A04G113200 Gossypium hirsutum HOM05D003662 ORTHO05D001824 1.9e-13 79.0 77 51.9
Manes.14G166300 Manihot esculenta HOM05D003662 ORTHO05D001824 1.9e-13 79.0 80 52.5
Psat7g026160 Pisum sativum HOM05D004963 ORTHO05D001824 3.2e-13 78.2 41 82.9
Sabra01G0157900 Salix brachista HOM05D003662 ORTHO05D001824 4.2e-13 77.8 80 50.0
Gohir.A13G066800 Gossypium hirsutum HOM05D003662 ORTHO05D001824 7.2e-13 77.0 77 48.1
Gohir.D13G054800 Gossypium hirsutum HOM05D003662 ORTHO05D001824 7.2e-13 77.0 77 48.1
Gorai.013G061600 Gossypium raimondii HOM05D003662 ORTHO05D001824 7.2e-13 77.0 77 48.1
Duzib248G0964 Durio zibethinus HOM05D003662 ORTHO05D001824 9.4e-13 76.6 77 53.2
TPR.G21004 Trifolium pratense HOM05D003662 ORTHO05D001824 1.2e-12 76.3 34 100.0
Gohir.A13G066101 Gossypium hirsutum HOM05D003662 ORTHO05D001824 1.6e-12 75.9 77 48.1
QL11p020558 Quercus lobata HOM05D003662 ORTHO05D001824 2.1e-12 75.5 77 51.9
TWI14G0069 Tripterygium wilfordii HOM05D003662 ORTHO05D001824 2.1e-12 75.5 76 48.7
ClCG10G009220 Citrullus lanatus HOM05D003662 ORTHO05D001824 2.7e-12 75.1 75 48.0
MELO3C019019.2 Cucumis melo HOM05D003662 ORTHO05D001824 3.6e-12 74.7 75 48.0
CsaV3_4G009390 Cucumis sativus L. HOM05D003662 ORTHO05D001824 3.6e-12 74.7 75 48.0
TWI23G0811 Tripterygium wilfordii HOM05D003662 ORTHO05D001824 3.6e-12 74.7 75 49.3
CSS0012064 Camellia sinensis var. sinensis HOM05D003662 ORTHO05D001824 4.7e-12 74.3 75 50.7
Dinv09038 Davidia involucrata HOM05D003662 ORTHO05D001824 4.7e-12 74.3 76 51.3
PGR042G2509 Punica granatum HOM05D003662 ORTHO05D001824 8.0e-12 73.6 78 48.7
Cfa005607 Carpinus fangiana HOM05D003662 ORTHO05D001824 1.0e-11 73.2 77 49.4
Duzib132G0110 Durio zibethinus HOM05D003662 ORTHO05D001824 1.0e-11 73.2 77 50.6
Haze_10685 Corylus avellana HOM05D003662 ORTHO05D001824 1.8e-11 72.4 77 49.4
Psat5g196240 Pisum sativum HOM05D003662 ORTHO05D001824 3.0e-11 71.6 36 88.9
Hma1.2p1_0704F.1_g206720 Hydrangea macrophylla HOM05D003662 ORTHO05D001824 4.0e-11 71.2 77 48.1
BcaB02g09780 Brassica carinata HOM05D003662 ORTHO05D001824 6.7e-11 70.5 74 51.4
Lj5A240T38 Lonicera japonica HOM05D003662 ORTHO05D001824 6.7e-11 70.5 77 48.1
Sp2g27230 Schrenkiella parvula HOM05D003662 ORTHO05D001824 1.1e-10 69.7 71 50.7
Thhalv10003831m.g Eutrema salsugineum HOM05D003662 ORTHO05D001824 1.5e-10 69.3 71 50.7
THA.LOC104799974 Tarenaya hassleriana HOM05D003662 ORTHO05D001824 1.5e-10 69.3 76 47.4
Sc08g0003380 Simmondsia chinensis HOM05D003662 ORTHO05D001824 5.7e-10 67.4 74 48.6
Sed0006995 Sechium edule HOM05D003662 ORTHO05D001824 9.7e-10 66.6 75 42.7
BcaC01g02674 Brassica carinata HOM05D003662 ORTHO05D001824 1.3e-09 66.2 75 46.7
Cc02_g21620 Coffea canephora HOM05D003662 ORTHO05D001824 1.3e-09 66.2 75 49.3
Sed0005558 Sechium edule HOM05D003662 ORTHO05D001824 1.3e-09 66.2 71 43.7
C03p62080 Brassica napus HOM05D003662 ORTHO05D001824 1.7e-09 65.9 74 48.6
BolC3t18469H Brassica oleracea HOM05D003662 ORTHO05D001824 1.7e-09 65.9 74 48.6
TAR376G0165 Trochodendron aralioides HOM05D003662 ORTHO05D001824 1.7e-09 65.9 77 48.1
AT5G64170 Arabidopsis thaliana HOM05D003662 ORTHO05D001824 2.8e-09 65.1 74 48.6
AL8G41440 Arabidopsis lyrata HOM05D003662 ORTHO05D001824 3.7e-09 64.7 74 47.3
C02p63220 Brassica napus HOM05D003662 ORTHO05D001824 3.7e-09 64.7 76 43.4
Carub.0008s2496 Capsella rubella HOM05D003662 ORTHO05D001824 3.7e-09 64.7 74 45.9
BcaB07g29728 Brassica carinata HOM05D003662 ORTHO05D001824 4.8e-09 64.3 79 43.0
BraA06t26028Z Brassica rapa HOM05D003662 ORTHO05D001824 4.8e-09 64.3 72 51.4
Peaxi162Scf00003g03637 Petunia axillaris HOM05D003662 ORTHO05D001824 6.3e-09 63.9 77 39.0
Aa31LG1G17760 Aethionema arabicum HOM05D003662 ORTHO05D001824 1.1e-08 63.2 68 45.6
CARHR278080 Cardamine hirsuta HOM05D003662 ORTHO05D001824 1.1e-08 63.2 75 48.0
Eucgr.G00771 Eucalyptus grandis HOM05D003662 ORTHO05D001824 1.1e-08 63.2 74 44.6
TAR628G0445 Trochodendron aralioides HOM05D003662 ORTHO05D001824 1.1e-08 63.2 78 46.2
A06p30890 Brassica napus HOM05D003662 ORTHO05D001824 1.8e-08 62.4 72 50.0
TAR381G1495 Trochodendron aralioides HOM05D003662 ORTHO05D001824 1.8e-08 62.4 84 45.2
HanXRQChr03g0066941 Helianthus annuus HOM05D003662 ORTHO05D001824 4.1e-08 61.2 61 49.2
Hund00056 Selenicereus undatus HOM05D003662 ORTHO05D001824 5.3e-08 60.8 83 42.2
EL10Ac9g21467 Beta vulgaris HOM05D003662 ORTHO05D001824 9.1e-08 60.1 79 41.8
MBI02_g08727_MAGBIO Magnolia biondii HOM05D003662 ORTHO05D001824 9.1e-08 60.1 80 45.0
Nitab4.5_0000078g0010 Nicotiana tabacum HOM05D003662 ORTHO05D001824 9.1e-08 60.1 74 43.2
Nitab4.5_0005015g0020 Nicotiana tabacum HOM05D003662 ORTHO05D001824 9.1e-08 60.1 74 41.9
Nn5g30130 Nelumbo nucifera HOM05D003662 ORTHO05D001824 1.6e-07 59.3 76 44.7
Lj9A354G33 Lonicera japonica HOM05D003662 ORTHO05D001824 3.5e-07 58.2 77 39.0
Hma1.2p1_0522F.1_g171610 Hydrangea macrophylla HOM05D003662 ORTHO05D001824 5.9e-07 57.4 70 50.0
Oeu007958.1 Olea europaea HOM05D003662 ORTHO05D001824 7.7e-07 57.0 75 42.7
Sopen04g004230 Solanum pennellii HOM05D003662 ORTHO05D001824 7.7e-07 57.0 74 41.9
PSO781G0010 Papaver somniferum HOM05D003662 ORTHO05D001824 1.3e-06 56.2 67 49.3
PSO210G5924 Papaver somniferum HOM05D003662 ORTHO05D001824 1.7e-06 55.8 48 54.2
PSO541G6545 Papaver somniferum HOM05D003662 ORTHO05D001824 1.7e-06 55.8 67 49.3
HanXRQChr16g0514001 Helianthus annuus HOM05D003662 ORTHO05D001824 2.9e-06 55.1 67 43.3
Lsat_1_v5_gn_9_117361 Lactuca sativa HOM05D003662 ORTHO05D001824 2.9e-06 55.1 61 44.3
PSO447G0309 Papaver somniferum HOM05D003662 ORTHO05D001824 3.8e-06 54.7 48 52.1
AUR62013113 Chenopodium quinoa HOM05D003662 ORTHO05D001824 5.0e-06 54.3 80 40.0
HanXRQChr09g0249611 Helianthus annuus HOM05D003662 ORTHO05D001824 6.5e-06 53.9 70 40.0
HanXRQChr10g0295841 Helianthus annuus HOM05D003662 ORTHO05D001824 6.5e-06 53.9 76 38.2
Oeu011776.1 Olea europaea HOM05D003662 ORTHO05D001824 6.5e-06 53.9 72 40.3
AUR62010118 Chenopodium quinoa HOM05D003662 ORTHO05D001824 8.5e-06 53.5 80 37.5


User provided reference genes

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