Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G13583 Trifolium pratense HOM05D007293 ORTHO05D009143 1.3e-44 183.0 112 100.0
Psat2g106240 Pisum sativum HOM05D007293 ORTHO05D009143 2.8e-31 138.7 112 75.0
Psat0s2875g0160 Pisum sativum HOM05D007293 ORTHO05D009143 4.8e-31 137.9 112 75.0
TPR.G13591 Trifolium pratense HOM05D007293 ORTHO05D009143 1.1e-30 136.7 110 70.0
Medtr5g034340 Medicago truncatula HOM05D007293 ORTHO05D009143 1.9e-27 125.9 108 71.3
Ca_13998_v3 Cicer arietinum L. HOM05D007293 ORTHO05D009143 8.0e-26 120.6 107 69.2
Lj2g0011400 Lotus japonicus HOM05D007293 ORTHO05D009143 3.3e-24 115.2 113 64.6
Lalb_Chr09g0326381 Lupinus albus HOM05D007293 ORTHO05D009143 7.4e-24 114.0 114 58.8
Phvul.002G071600 Phaseolus vulgaris HOM05D007293 ORTHO05D009143 1.1e-22 110.2 110 59.1
Glyma.02G034600 Glycine max HOM05D007293 ORTHO05D009143 5.3e-22 107.8 111 60.4
VMungo1215G2593 Vigna mungo HOM05D007293 ORTHO05D009143 6.5e-20 100.9 105 57.1
Prupe.1G253900 Prunus persica HOM05D007293 ORTHO05D009143 1.8e-17 92.8 110 53.6
CiPaw.05G150900 Carya illinoinensis HOM05D007293 ORTHO05D009143 5.2e-17 91.3 110 52.7
Medtr5g034360 Medicago truncatula HOM05D007293 ORTHO05D009143 6.7e-17 90.9 105 68.6
Ciclev10033010m.g Citrus clementina HOM05D007293 ORTHO05D009143 8.8e-17 90.5 110 56.4
MD13G1091900 Malus domestica HOM05D007293 ORTHO05D009143 1.2e-16 90.1 110 54.5
MD16G1092500 Malus domestica HOM05D007293 ORTHO05D009143 1.5e-16 89.7 110 54.5
Atru.chr11.2025 Acer truncatum HOM05D007293 ORTHO05D009143 3.3e-16 88.6 110 52.7
arahy.Tifrunner.gnm1.ann1.F37JRW Arachis hypogaea HOM05D007293 ORTHO05D009143 4.4e-16 88.2 106 52.8
FAN17G1887 Fragaria x ananassa HOM05D007293 ORTHO05D009143 4.4e-16 88.2 112 49.1
FAN22G1529 Fragaria x ananassa HOM05D007293 ORTHO05D009143 4.4e-16 88.2 112 49.1
arahy.Tifrunner.gnm1.ann1.HDCN36 Arachis hypogaea HOM05D007293 ORTHO05D009143 7.5e-16 87.4 106 52.8
Cfa009144 Carpinus fangiana HOM05D007293 ORTHO05D009143 7.5e-16 87.4 113 52.2
FAN12G1260 Fragaria x ananassa HOM05D007293 ORTHO05D009143 1.3e-15 86.7 111 51.4
RcHm_v2.0_Chr4g0443841 Rosa chinensis HOM05D007293 ORTHO05D009143 1.3e-15 86.7 110 50.0
FvH4_4g34460 Fragaria vesca HOM05D007293 ORTHO05D009143 1.7e-15 86.3 112 48.2
RcHm_v2.0_Chr4g0443851 Rosa chinensis HOM05D007293 ORTHO05D009143 2.2e-15 85.9 110 50.9
Manes.13G030700 Manihot esculenta HOM05D007293 ORTHO05D009143 2.8e-15 85.5 114 50.0
TWI75G0451 Tripterygium wilfordii HOM05D007293 ORTHO05D009143 2.8e-15 85.5 110 49.1
Gorai.005G182700 Gossypium raimondii HOM05D007293 ORTHO05D009143 6.3e-15 84.3 110 48.2
Gohir.A03G139900 Gossypium hirsutum HOM05D007293 ORTHO05D009143 1.1e-14 83.6 110 48.2
PGR119G0124 Punica granatum HOM05D007293 ORTHO05D009143 1.4e-14 83.2 110 48.2
THA.LOC104808972 Tarenaya hassleriana HOM05D007293 ORTHO05D009143 1.4e-14 83.2 110 50.0
Gohir.D02G162700 Gossypium hirsutum HOM05D007293 ORTHO05D009143 2.4e-14 82.4 110 47.3
Duzib268G1575 Durio zibethinus HOM05D007293 ORTHO05D009143 7.0e-14 80.9 111 47.7
Thecc.02G249100 Theobroma cacao HOM05D007293 ORTHO05D009143 9.1e-14 80.5 110 48.2
THA.LOC104822141 Tarenaya hassleriana HOM05D007293 ORTHO05D009143 1.2e-13 80.1 110 50.0
CANSAT01G1482 Cannabis sativa HOM05D007293 ORTHO05D009143 2.0e-13 79.3 110 48.2
ClCG08G018060 Citrullus lanatus HOM05D007293 ORTHO05D009143 7.7e-13 77.4 105 50.5
Carub.0002s1704 Capsella rubella HOM05D007293 ORTHO05D009143 1.0e-12 77.0 110 47.3
Eucgr.H02610 Eucalyptus grandis HOM05D007293 ORTHO05D009143 1.7e-12 76.3 118 46.6
AL2G29660 Arabidopsis lyrata HOM05D007293 ORTHO05D009143 3.8e-12 75.1 110 45.5
BcaB03g15542 Brassica carinata HOM05D007293 ORTHO05D009143 3.8e-12 75.1 110 45.5
Duzib251G0045 Durio zibethinus HOM05D007293 ORTHO05D009143 3.8e-12 75.1 106 47.2
Prupe.5G015600 Prunus persica HOM05D007293 ORTHO05D009143 5.0e-12 74.7 108 47.2
AT1G70350 Arabidopsis thaliana HOM05D007293 ORTHO05D009143 1.1e-11 73.6 110 45.5
CARHR063530 Cardamine hirsuta HOM05D007293 ORTHO05D009143 1.1e-11 73.6 110 44.5
EL10Ac6g13673 Beta vulgaris HOM05D007293 ORTHO05D009143 1.5e-11 73.2 66 63.6
Dinv33495 Davidia involucrata HOM05D007293 ORTHO05D009143 1.9e-11 72.8 111 45.9
QL03p061237 Quercus lobata HOM05D007293 ORTHO05D009143 2.5e-11 72.4 58 67.2
BcaB05g24561 Brassica carinata HOM05D007293 ORTHO05D009143 5.5e-11 71.2 110 45.5
Migut.K01369 Erythranthe guttata HOM05D007293 ORTHO05D009143 7.2e-11 70.9 110 45.5
Hund05995 Selenicereus undatus HOM05D007293 ORTHO05D009143 7.2e-11 70.9 70 58.6
Sp5g25470 Schrenkiella parvula HOM05D007293 ORTHO05D009143 9.4e-11 70.5 110 44.5
COL.COLO4_36768 Corchorus olitorius HOM05D007293 ORTHO05D009143 1.6e-10 69.7 104 45.2
Haze_12178 Corylus avellana HOM05D007293 ORTHO05D009143 2.7e-10 68.9 109 44.0
Thhalv10019350m.g Eutrema salsugineum HOM05D007293 ORTHO05D009143 2.7e-10 68.9 110 44.5
Migut.H00123 Erythranthe guttata HOM05D007293 ORTHO05D009143 4.7e-10 68.2 111 45.9
Sc04g0009130 Simmondsia chinensis HOM05D007293 ORTHO05D009143 4.7e-10 68.2 49 71.4
BcaC08g45820 Brassica carinata HOM05D007293 ORTHO05D009143 6.1e-10 67.8 112 45.5
Lj7A591G78 Lonicera japonica HOM05D007293 ORTHO05D009143 1.0e-09 67.0 52 71.2
CSS0045153 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 5.2e-09 64.7 113 41.6
CDE06G2495 Ceratophyllum demersum HOM05D007293 ORTHO05D009143 5.2e-09 64.7 49 73.5
A07p31100 Brassica napus HOM05D007293 ORTHO05D009143 6.8e-09 64.3 106 45.3
BraA07t30744Z Brassica rapa HOM05D007293 ORTHO05D009143 6.8e-09 64.3 106 45.3
Nn3g16892 Nelumbo nucifera HOM05D007293 ORTHO05D009143 6.8e-09 64.3 56 69.6
Oeu062917.1 Olea europaea HOM05D007293 ORTHO05D009143 8.8e-09 63.9 105 44.8
MSTRG.24016 Avicennia marina HOM05D007293 ORTHO05D009143 1.2e-08 63.5 110 43.6
BcaC03g15179 Brassica carinata HOM05D007293 ORTHO05D009143 1.5e-08 63.2 110 44.5
A02p16490 Brassica napus HOM05D007293 ORTHO05D009143 2.0e-08 62.8 53 66.0
BraA02t06707Z Brassica rapa HOM05D007293 ORTHO05D009143 2.0e-08 62.8 53 66.0
AUR62014041 Chenopodium quinoa HOM05D007293 ORTHO05D009143 2.6e-08 62.4 106 44.3
BolC2t08814H Brassica oleracea HOM05D007293 ORTHO05D009143 3.4e-08 62.0 48 70.8
C06p36130 Brassica napus HOM05D007293 ORTHO05D009143 4.4e-08 61.6 106 43.4
CSS0040497 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 4.4e-08 61.6 110 41.8
CDE04G1122 Ceratophyllum demersum HOM05D007293 ORTHO05D009143 4.4e-08 61.6 49 71.4
AUR62005378 Chenopodium quinoa HOM05D007293 ORTHO05D009143 9.8e-08 60.5 58 60.3
HanXRQChr08g0220621 Helianthus annuus HOM05D007293 ORTHO05D009143 9.8e-08 60.5 49 69.4
GSVIVG01032483001 Vitis vinifera HOM05D007293 ORTHO05D009143 9.8e-08 60.5 111 42.3
BolC6t38732H Brassica oleracea HOM05D007293 ORTHO05D009143 1.3e-07 60.1 106 43.4
Dinv35058 Davidia involucrata HOM05D007293 ORTHO05D009143 1.3e-07 60.1 110 40.9
Zm00001eb153880 Zea mays HOM05D007293 ORTHO05D009143 1.3e-07 60.1 65 52.3
C02p27590 Brassica napus HOM05D007293 ORTHO05D009143 2.2e-07 59.3 109 43.1
CsaV3_4G037870 Cucumis sativus L. HOM05D001719 ORTHO05D008883 2.2e-07 59.3 104 43.3
Lsat_1_v5_gn_4_182280 Lactuca sativa HOM05D007293 ORTHO05D009143 2.8e-07 58.9 49 67.3
Os01g0738000 Oryza sativa ssp. japonica HOM05D007293 ORTHO05D009143 2.8e-07 58.9 55 56.4
DCAR_011205 Daucus carota HOM05D007293 ORTHO05D009143 3.7e-07 58.5 114 39.5
TAR622G0242 Trochodendron aralioides HOM05D007293 ORTHO05D009143 3.7e-07 58.5 108 43.5
CSS0015603 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 4.8e-07 58.2 109 40.4
Aqoxy3G02974 Aquilegia oxysepala HOM05D007293 ORTHO05D009143 6.3e-07 57.8 113 41.6
HPP92_019952 Vanilla planifolia HOM05D007293 ORTHO05D009143 1.1e-06 57.0 68 52.9
Actinidia06026 Actinidia chinensis HOM05D007293 ORTHO05D009143 4.1e-06 55.1 56 57.1
BcaB07g33183 Brassica carinata HOM05D027076 ORTHO05D027107 5.4e-06 54.7 47 66.0
Cc07_g02290 Coffea canephora HOM05D007293 ORTHO05D009143 9.1e-06 53.9 104 41.3
PSO063G5020 Papaver somniferum HOM05D007293 ORTHO05D009143 9.1e-06 53.9 113 44.2


User provided reference genes

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