Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G13517 Trifolium pratense HOM05D003740 ORTHO05D027079 4.5e-46 188.0 125 100.0
TPR.G19664 Trifolium pratense HOM05D003740 ORTHO05D004611 6.1e-43 177.6 124 88.7
Medtr8g446850 Medicago truncatula HOM05D003740 ORTHO05D004611 1.4e-39 166.4 124 71.0
Medtr0012s0090 Medicago truncatula HOM05D003740 ORTHO05D004611 3.1e-39 165.2 124 71.0
Medtr3g045150 Medicago truncatula HOM05D003740 ORTHO05D004611 3.1e-39 165.2 124 71.0
Lj5g0015883 Lotus japonicus HOM05D003740 ORTHO05D004611 4.1e-39 164.9 88 88.6
Ca_25790_v3 Cicer arietinum L. HOM05D003740 ORTHO05D004611 9.1e-39 163.7 124 67.7
Psat6g118200 Pisum sativum HOM05D003740 ORTHO05D004611 1.0e-37 160.2 87 88.5
TPR.G2316 Trifolium pratense HOM05D003740 ORTHO05D004611 2.1e-35 152.5 88 83.0
arahy.Tifrunner.gnm1.ann1.0DR8LC Arachis hypogaea HOM05D003740 ORTHO05D004611 6.8e-34 147.5 87 77.0
arahy.Tifrunner.gnm1.ann1.G7Z7YE Arachis hypogaea HOM05D003740 ORTHO05D004611 1.2e-33 146.7 87 77.0
Phvul.007G249500 Phaseolus vulgaris HOM05D003740 ORTHO05D004611 5.7e-33 144.4 87 78.2
VMungo0720G0943 Vigna mungo HOM05D003740 ORTHO05D004611 7.5e-33 144.1 87 78.2
Glyma.02G190700 Glycine max HOM05D003740 ORTHO05D004611 2.2e-32 142.5 87 78.2
Prupe.7G050100 Prunus persica HOM05D003740 ORTHO05D004611 2.2e-32 142.5 88 79.5
ClCG04G004010 Citrullus lanatus HOM05D003740 ORTHO05D004611 4.9e-32 141.4 88 79.5
MD12G1086200 Malus domestica HOM05D003740 ORTHO05D004611 6.3e-32 141.0 88 77.3
MELO3C014202.2 Cucumis melo HOM05D003740 ORTHO05D004611 1.1e-31 140.2 88 79.5
CsaV3_4G027630 Cucumis sativus L. HOM05D003740 ORTHO05D004611 1.1e-31 140.2 88 79.5
Ciclev10005020m.g Citrus clementina HOM05D003740 ORTHO05D004611 3.1e-31 138.7 88 76.1
Eucgr.A02296 Eucalyptus grandis HOM05D003740 ORTHO05D004611 3.1e-31 138.7 88 80.7
MD14G1080600 Malus domestica HOM05D003740 ORTHO05D004611 3.1e-31 138.7 88 75.0
Prupe.1G032300 Prunus persica HOM05D003740 ORTHO05D004611 9.2e-31 137.1 88 78.4
Sed0006234 Sechium edule HOM05D003740 ORTHO05D004611 1.2e-30 136.7 88 76.1
Lalb_Chr02g0156411 Lupinus albus HOM05D003740 ORTHO05D004611 7.8e-30 134.0 88 70.5
Atru.chr1.1193 Acer truncatum HOM05D003740 ORTHO05D004611 1.7e-29 132.9 88 73.9
Sed0013360 Sechium edule HOM05D003740 ORTHO05D004611 1.7e-29 132.9 88 75.0
Lalb_Chr21g0316601 Lupinus albus HOM05D003740 ORTHO05D004611 2.3e-29 132.5 88 71.6
TPR.G11551 Trifolium pratense HOM05D003740 ORTHO05D004611 5.0e-29 131.3 107 80.4
Duzib128G1723 Durio zibethinus HOM05D003740 ORTHO05D004611 1.5e-28 129.8 88 70.5
Manes.08G053600 Manihot esculenta HOM05D003740 ORTHO05D004611 1.5e-28 129.8 88 71.6
Sabra16G0047800 Salix brachista HOM05D003740 ORTHO05D004611 1.5e-28 129.8 88 72.7
TWI53G1619 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 1.9e-28 129.4 88 71.6
Atru.chr6.1381 Acer truncatum HOM05D003740 ORTHO05D004611 2.5e-28 129.0 88 72.7
Cpa.g.c37387 Carica papaya HOM05D003740 ORTHO05D004611 2.5e-28 129.0 88 71.6
Glyma.10G105900 Glycine max HOM05D003740 ORTHO05D004611 2.5e-28 129.0 85 76.5
TWI74G0940 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 3.3e-28 128.6 88 69.3
Sopen04g008590 Solanum pennellii HOM05D003740 ORTHO05D004611 4.3e-28 128.3 89 71.9
Potri.006G045700 Populus trichocarpa HOM05D003740 ORTHO05D004611 5.6e-28 127.9 88 72.7
RcHm_v2.0_Chr3g0484361 Rosa chinensis HOM05D003740 ORTHO05D004611 9.5e-28 127.1 88 70.5
RcHm_v2.0_Chr3g0484511 Rosa chinensis HOM05D003740 ORTHO05D004611 9.5e-28 127.1 88 70.5
FvH4_6g24760 Fragaria vesca HOM05D003740 ORTHO05D004611 1.2e-27 126.7 88 71.6
FAN02G1973 Fragaria x ananassa HOM05D003740 ORTHO05D004611 1.2e-27 126.7 88 71.6
FAN05G1357 Fragaria x ananassa HOM05D003740 ORTHO05D004611 1.2e-27 126.7 88 71.6
FAN09G1292 Fragaria x ananassa HOM05D003740 ORTHO05D004611 1.2e-27 126.7 88 71.6
FAN14G5242 Fragaria x ananassa HOM05D003740 ORTHO05D004611 1.2e-27 126.7 88 71.6
Gohir.D09G116000 Gossypium hirsutum HOM05D003740 ORTHO05D004611 1.6e-27 126.3 88 71.6
Potri.016G042100 Populus trichocarpa HOM05D003740 ORTHO05D004611 2.1e-27 125.9 86 72.1
TWI77G0796 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 2.8e-27 125.6 86 69.8
Gohir.A09G119800 Gossypium hirsutum HOM05D003740 ORTHO05D004611 4.7e-27 124.8 88 70.5
Thecc.05G145300 Theobroma cacao HOM05D003740 ORTHO05D004611 6.1e-27 124.4 88 70.5
Duzib106G0923 Durio zibethinus HOM05D003740 ORTHO05D004611 1.0e-26 123.6 88 68.2
PGR004G2716 Punica granatum HOM05D003740 ORTHO05D004611 1.0e-26 123.6 82 76.8
Actinidia17677 Actinidia chinensis HOM05D003740 ORTHO05D004611 3.0e-26 122.1 87 73.6
Dinv05312 Davidia involucrata HOM05D003740 ORTHO05D004611 3.0e-26 122.1 88 71.6
GSVIVG01033552001 Vitis vinifera HOM05D003740 ORTHO05D004611 6.8e-26 120.9 85 72.9
Actinidia39193 Actinidia chinensis HOM05D003740 ORTHO05D004611 1.2e-25 120.2 88 70.5
Peaxi162Scf00130g01015 Petunia axillaris HOM05D003740 ORTHO05D004611 2.6e-25 119.0 88 67.0
Rhsim03G0031000 Rhododendron simsii HOM05D003740 ORTHO05D004611 3.4e-25 118.6 88 67.0
Lj1A1122T44 Lonicera japonica HOM05D003740 ORTHO05D004611 5.8e-25 117.9 89 66.3
THA.LOC104803288 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 7.5e-25 117.5 85 65.9
SalBow1G2954 Salvia bowleyana HOM05D003740 ORTHO05D004611 9.8e-25 117.1 88 67.0
Gorai.006G134300 Gossypium raimondii HOM05D003740 ORTHO05D004611 1.3e-24 116.7 85 69.4
Actinidia38142 Actinidia chinensis HOM05D003740 ORTHO05D004611 1.7e-24 116.3 86 69.8
MSTRG.26143 Avicennia marina HOM05D003740 ORTHO05D004611 1.7e-24 116.3 87 63.2
Cfa016754 Carpinus fangiana HOM05D003740 ORTHO05D004611 1.7e-24 116.3 90 64.4
THA.LOC104816968 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 1.7e-24 116.3 85 63.5
CSS0019779 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 2.2e-24 115.9 88 65.9
Ah.13g076780 Amaranthus hybridus HOM05D003740 ORTHO05D004611 2.9e-24 115.5 89 65.2
Hund19125 Selenicereus undatus HOM05D003740 ORTHO05D004611 2.9e-24 115.5 89 64.0
EL10Ac3g07158 Beta vulgaris HOM05D003740 ORTHO05D004611 3.7e-24 115.2 89 64.0
HanXRQChr10g0277771 Helianthus annuus HOM05D003740 ORTHO05D004611 3.7e-24 115.2 88 69.3
Dinv34246 Davidia involucrata HOM05D003740 ORTHO05D004611 4.9e-24 114.8 88 64.8
Lsat_1_v5_gn_6_15201 Lactuca sativa HOM05D003740 ORTHO05D004611 4.9e-24 114.8 88 64.8
CSS0009879 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 6.4e-24 114.4 89 64.0
QL07p005086 Quercus lobata HOM05D003740 ORTHO05D004611 6.4e-24 114.4 89 66.3
TAR636G0750 Trochodendron aralioides HOM05D003740 ORTHO05D004611 6.4e-24 114.4 85 68.2
Haze_19750 Corylus avellana HOM05D003740 ORTHO05D004611 1.1e-23 113.6 90 62.2
CARHR136610 Cardamine hirsuta HOM05D003740 ORTHO05D004611 3.2e-23 112.1 85 63.5
Sp4g23760 Schrenkiella parvula HOM05D003740 ORTHO05D004611 3.2e-23 112.1 85 62.4
Aa31LG1G23510 Aethionema arabicum HOM05D003740 ORTHO05D004611 4.1e-23 111.7 85 62.4
CARHR167400 Cardamine hirsuta HOM05D003740 ORTHO05D004611 4.1e-23 111.7 88 61.4
SHI12878 Sapria himalayana HOM05D003740 ORTHO05D004611 4.1e-23 111.7 89 61.8
BcaC02g09904 Brassica carinata HOM05D003740 ORTHO05D004611 5.4e-23 111.3 85 62.4
C04p35340 Brassica napus HOM05D003740 ORTHO05D004611 5.4e-23 111.3 85 62.4
BolC4t25088H Brassica oleracea HOM05D003740 ORTHO05D004611 5.4e-23 111.3 85 62.4
Thhalv10016688m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 5.4e-23 111.3 85 62.4
AT2G41490 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 7.0e-23 110.9 85 61.2
DCAR_016970 Daucus carota HOM05D003740 ORTHO05D004611 7.0e-23 110.9 87 63.2
CiPaw.09G042200 Carya illinoinensis HOM05D003740 ORTHO05D004611 9.2e-23 110.5 90 62.2
Migut.K00119 Erythranthe guttata HOM05D003740 ORTHO05D004611 9.2e-23 110.5 88 63.6
MBI13_g04792_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 9.2e-23 110.5 85 63.5
Sc13g0001500 Simmondsia chinensis HOM05D003740 ORTHO05D004611 9.2e-23 110.5 72 70.8
Carub.0005s2403 Capsella rubella HOM05D003740 ORTHO05D004611 1.2e-22 110.2 85 61.2
AL5G38710 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 1.6e-22 109.8 85 61.2
Carub.0004s2379 Capsella rubella HOM05D003740 ORTHO05D004611 1.6e-22 109.8 85 61.2
Thhalv10007732m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 1.6e-22 109.8 85 61.2
BcaB02g08329 Brassica carinata HOM05D003740 ORTHO05D004611 2.0e-22 109.4 85 62.4
C08p32520 Brassica napus HOM05D003740 ORTHO05D004611 2.0e-22 109.4 85 61.2
BolC8t50867H Brassica oleracea HOM05D003740 ORTHO05D004611 2.0e-22 109.4 85 61.2
A09p50150 Brassica napus HOM05D003740 ORTHO05D004611 2.7e-22 109.0 85 60.0
BraA09t40467Z Brassica rapa HOM05D003740 ORTHO05D004611 2.7e-22 109.0 85 60.0
Thhalv10005999m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 2.7e-22 109.0 85 61.2
Aa31LG10G12120 Aethionema arabicum HOM05D003740 ORTHO05D004611 3.5e-22 108.6 85 61.2
AL4G39580 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 3.5e-22 108.6 85 61.2
AT3G57220 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 3.5e-22 108.6 88 59.1
AUR62026121 Chenopodium quinoa HOM05D003740 ORTHO05D004611 3.5e-22 108.6 85 61.2
DCAR_020539 Daucus carota HOM05D003740 ORTHO05D004611 3.5e-22 108.6 89 65.2
Nn7g37216 Nelumbo nucifera HOM05D003740 ORTHO05D004611 3.5e-22 108.6 88 60.2
BraA04t16052Z Brassica rapa HOM05D003740 ORTHO05D004611 4.6e-22 108.2 85 61.2
Lj2A390G27 Lonicera japonica HOM05D003740 ORTHO05D004611 4.6e-22 108.2 86 62.8
Nn6g34910 Nelumbo nucifera HOM05D003740 ORTHO05D004611 4.6e-22 108.2 88 60.2
A05p02310 Brassica napus HOM05D003740 ORTHO05D004611 1.0e-21 107.1 85 60.0
BolC4t21915H Brassica oleracea HOM05D003740 ORTHO05D004611 1.0e-21 107.1 85 60.0
BraA05t19226Z Brassica rapa HOM05D003740 ORTHO05D004611 1.0e-21 107.1 85 60.0
AUR62024529 Chenopodium quinoa HOM05D003740 ORTHO05D004611 2.3e-21 105.9 85 60.0
MSTRG.10801 Avicennia marina HOM05D003740 ORTHO05D004611 3.0e-21 105.5 88 59.1
unitig_748.g7227 Utricularia gibba HOM05D003740 ORTHO05D004611 6.6e-21 104.4 89 55.1
C04p02750 Brassica napus HOM05D003740 ORTHO05D004611 8.6e-21 104.0 85 58.8
TPR.G2297 Trifolium pratense HOM05D003740 ORTHO05D411092 1.5e-20 103.2 70 72.9
Aqoxy2G02041 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 2.5e-20 102.4 88 55.7
Cc06_g18360 Coffea canephora HOM05D003740 ORTHO05D004611 2.5e-20 102.4 88 58.0
SGA_v2.0_scaffold105G30359 Striga asiatica HOM05D003740 ORTHO05D004611 2.5e-20 102.4 88 56.8
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 3.3e-20 102.1 78 61.5
Migut.J01706 Erythranthe guttata HOM05D003740 ORTHO05D004611 3.3e-20 102.1 88 58.0
Solyc04g016520.3 Solanum lycopersicum HOM05D003740 ORTHO05D004611 3.3e-20 102.1 89 61.8
Oeu006922.2 Olea europaea HOM05D003740 ORTHO05D004611 4.3e-20 101.7 80 61.2
BcaNung06793 Brassica carinata HOM05D003740 ORTHO05D004611 5.6e-20 101.3 85 57.6
ATR0782G053 Amborella trichopoda HOM05D003740 ORTHO05D004611 7.3e-20 100.9 89 55.1
Rhsim04G0107900 Rhododendron simsii HOM05D003740 ORTHO05D004611 7.3e-20 100.9 81 64.2
CANSAT80G1617 Cannabis sativa HOM05D003740 ORTHO05D004611 1.2e-19 100.1 67 68.7
PSO384G1999 Papaver somniferum HOM05D003740 ORTHO05D004611 8.0e-19 97.4 72 62.5
PGSC0003DMG400012722 Solanum tuberosum HOM05D003740 ORTHO05D004611 1.1e-18 97.1 89 60.7
PSO339G5696 Papaver somniferum HOM05D003740 ORTHO05D004611 6.8e-18 94.4 72 59.7
RcHm_v2.0_Chr3g0484421 Rosa chinensis HOM05D003740 ORTHO05D004611 1.2e-17 93.6 56 80.4
SEGI_04340 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 3.4e-17 92.0 88 52.3
CANSAT80G1359 Cannabis sativa HOM05D003740 ORTHO05D004611 9.8e-17 90.5 63 66.7
BcaC09g48688 Brassica carinata HOM05D003740 ORTHO05D027079 1.9e-15 86.3 84 51.2
BNapus_Darmor_BZH_scaffold_38p00040 Brassica napus HOM05D003740 ORTHO05D027079 7.0e-15 84.3 86 51.2
BcaC02g11255 Brassica carinata HOM05D003740 ORTHO05D015230 1.2e-14 83.6 55 67.3
Nitab4.5_0000826g0260 Nicotiana tabacum HOM05D003740 ORTHO05D004611 2.7e-14 82.4 86 54.7
Pp3c2_18380 Physcomitrium patens HOM05D003740 ORTHO05D004611 6.0e-14 81.3 86 51.2
Zm00001eb329870 Zea mays HOM05D003740 ORTHO05D004611 1.3e-13 80.1 90 44.4
Mapoly0120s0027 Marchantia polymorpha HOM05D003740 ORTHO05D004611 1.5e-12 76.6 76 50.0
Os07g0661100 Oryza sativa ssp. japonica HOM05D003740 ORTHO05D004611 4.3e-12 75.1 70 45.7
Zm00001eb110840 Zea mays HOM05D003740 ORTHO05D004611 1.1e-10 70.5 71 46.5
SMO364G0515 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 1.4e-10 70.1 90 43.3
SGA_v2.0_scaffold69G23130 Striga asiatica HOM05D003740 ORTHO05D004611 1.4e-10 70.1 88 45.5
CDE08G1337 Ceratophyllum demersum HOM05D003740 ORTHO05D004611 1.8e-10 69.7 50 64.0
HPP92_001282 Vanilla planifolia HOM05D003740 ORTHO05D004611 2.3e-10 69.3 42 71.4
AagrBONN_evm.TU.Sc2ySwM_344.2027 Anthoceros agrestis HOM05D003740 ORTHO05D004611 7.5e-09 64.3 90 37.8
AUR62022599 Chenopodium quinoa HOM05D003740 ORTHO05D004611 2.9e-08 62.4 46 58.7
AagrBONN_evm.TU.Sc2ySwM_368.1663 Anthoceros agrestis HOM05D003740 ORTHO05D004611 6.4e-08 61.2 90 35.6
vmacro09044 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 8.3e-08 60.8 31 90.3
CAN.G1237.3 Capsicum annuum HOM05D003740 ORTHO05D004611 1.9e-07 59.7 31 87.1
COL.COLO4_21300 Corchorus olitorius HOM05D003740 ORTHO05D004611 5.4e-07 58.2 31 87.1
A04p03820 Brassica napus HOM05D003740 ORTHO05D004611 9.2e-07 57.4 85 40.0


User provided reference genes

Program Settings