Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1351 Trifolium pratense HOM05D005658 ORTHO05D006989 7.9e-32 139.8 70 100.0
Medtr4g011330 Medicago truncatula HOM05D005658 ORTHO05D006989 1.8e-20 102.1 58 79.3
Psat7g255000 Pisum sativum HOM05D005658 ORTHO05D006989 4.1e-20 100.9 58 81.0
Psat5g078360 Pisum sativum HOM05D005658 ORTHO05D006989 6.9e-20 100.1 58 81.0
Ca_20421_v3 Cicer arietinum L. HOM05D005658 ORTHO05D006989 9.1e-20 99.8 58 79.3
Glyma.08G203800 Glycine max HOM05D005658 ORTHO05D006989 9.1e-20 99.8 59 79.7
TPR.G38603 Trifolium pratense HOM05D005658 ORTHO05D006989 1.2e-19 99.4 58 79.3
Glyma.07G018600 Glycine max HOM05D005658 ORTHO05D006989 2.9e-18 94.7 58 75.9
VMungo0331G0597 Vigna mungo HOM05D005658 ORTHO05D006989 6.5e-18 93.6 59 71.2
Phvul.010G147800 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 3.2e-17 91.3 59 69.5
Glyma.08G203700 Glycine max HOM05D005658 ORTHO05D006989 4.2e-17 90.9 58 74.1
arahy.Tifrunner.gnm1.ann1.17ZCGM Arachis hypogaea HOM05D005658 ORTHO05D006989 1.2e-16 89.4 54 74.1
Lalb_Chr04g0262841 Lupinus albus HOM05D005658 ORTHO05D006989 2.1e-16 88.6 58 67.2
arahy.Tifrunner.gnm1.ann1.5XEL3K Arachis hypogaea HOM05D005658 ORTHO05D006989 3.6e-16 87.8 54 72.2
Lj5g0006747 Lotus japonicus HOM05D005658 ORTHO05D006989 3.6e-16 87.8 58 74.1
Psat5g078240 Pisum sativum HOM05D005658 ORTHO05D006989 6.1e-16 87.0 61 68.9
AL3G28880 Arabidopsis lyrata HOM05D005658 ORTHO05D006989 1.4e-15 85.9 58 65.5
FAN14G0081 Fragaria x ananassa HOM05D005658 ORTHO05D006989 1.4e-15 85.9 58 65.5
Lj5g0010105 Lotus japonicus HOM05D005658 ORTHO05D006989 1.8e-15 85.5 58 70.7
FAN02G2498 Fragaria x ananassa HOM05D005658 ORTHO05D006989 3.9e-15 84.3 58 63.8
Gohir.D03G062533 Gossypium hirsutum HOM05D005658 ORTHO05D006989 5.2e-15 84.0 58 69.0
Gohir.D03G066800 Gossypium hirsutum HOM05D005658 ORTHO05D006989 5.2e-15 84.0 58 69.0
Thhalv10021560m.g Eutrema salsugineum HOM05D005658 ORTHO05D006989 6.7e-15 83.6 58 63.8
RcHm_v2.0_Chr2g0139251 Rosa chinensis HOM05D005658 ORTHO05D006989 8.8e-15 83.2 58 62.1
CANSAT56G4082 Cannabis sativa HOM05D005658 ORTHO05D006989 1.1e-14 82.8 58 63.8
Phvul.010G147700 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 1.1e-14 82.8 58 69.0
Potri.003G051700 Populus trichocarpa HOM05D005658 ORTHO05D006989 1.1e-14 82.8 58 63.8
Thecc.06G094500 Theobroma cacao HOM05D005658 ORTHO05D006989 1.5e-14 82.4 58 63.8
COL.COLO4_30455 Corchorus olitorius HOM05D005658 ORTHO05D006989 2.0e-14 82.0 58 65.5
PGR102G0856 Punica granatum HOM05D005658 ORTHO05D006989 2.0e-14 82.0 59 62.7
Sp3g14560 Schrenkiella parvula HOM05D005658 ORTHO05D006989 2.0e-14 82.0 58 62.1
BcaC09g48588 Brassica carinata HOM05D005658 ORTHO05D006989 4.4e-14 80.9 58 62.1
Gohir.A02G119700 Gossypium hirsutum HOM05D005658 ORTHO05D006989 4.4e-14 80.9 58 67.2
QL05p021437 Quercus lobata HOM05D005658 ORTHO05D006989 4.4e-14 80.9 58 62.1
Sabra03G0027300 Salix brachista HOM05D005658 ORTHO05D006989 4.4e-14 80.9 58 62.1
AT3G16190 Arabidopsis thaliana HOM05D005658 ORTHO05D006989 5.7e-14 80.5 58 60.3
CARHR091380 Cardamine hirsuta HOM05D005658 ORTHO05D006989 5.7e-14 80.5 58 62.1
FvH4_6g31890 Fragaria vesca HOM05D005658 ORTHO05D006989 5.7e-14 80.5 58 63.8
MD09G1208600 Malus domestica HOM05D005658 ORTHO05D006989 5.7e-14 80.5 58 62.1
VMungo0331G1814 Vigna mungo HOM05D005658 ORTHO05D006989 5.7e-14 80.5 53 69.8
Cpa.g.sc1241.2 Carica papaya HOM05D005658 ORTHO05D006989 7.4e-14 80.1 58 63.8
Prupe.3G064800 Prunus persica HOM05D005658 ORTHO05D006989 7.4e-14 80.1 58 60.3
CANSAT56G2118 Cannabis sativa HOM05D005658 ORTHO05D006989 9.7e-14 79.7 57 61.4
Haze_16345 Corylus avellana HOM05D003600 ORTHO05D004129 9.7e-14 79.7 55 69.1
Atru.chr1.3414 Acer truncatum HOM05D005658 ORTHO05D006989 1.7e-13 79.0 51 70.6
EL10Ac9g22053 Beta vulgaris HOM05D005658 ORTHO05D006989 1.7e-13 79.0 58 60.3
COL.COLO4_18473 Corchorus olitorius HOM05D005658 ORTHO05D006989 1.7e-13 79.0 59 66.1
Gorai.003G064300 Gossypium raimondii HOM05D005658 ORTHO05D006989 1.7e-13 79.0 58 67.2
THA.LOC104817977 Tarenaya hassleriana HOM05D005658 ORTHO05D006989 1.7e-13 79.0 58 58.6
Oeu029646.1 Olea europaea HOM05D005658 ORTHO05D006989 2.2e-13 78.6 54 66.7
COL.COLO4_30457 Corchorus olitorius HOM05D005658 ORTHO05D006989 3.7e-13 77.8 57 61.4
Duzib235G1329 Durio zibethinus HOM05D005658 ORTHO05D006989 3.7e-13 77.8 58 58.6
A05p33310 Brassica napus HOM05D005658 ORTHO05D006989 6.3e-13 77.0 59 62.7
CiPaw.01G234800 Carya illinoinensis HOM05D005658 ORTHO05D006989 6.3e-13 77.0 58 60.3
vmacro16973 Vaccinium macrocarpon HOM05D005658 ORTHO05D006989 8.2e-13 76.6 54 66.7
BraA05t22156Z Brassica rapa HOM05D005658 ORTHO05D006989 1.1e-12 76.3 67 58.2
Ciclev10026541m.g Citrus clementina HOM05D005658 ORTHO05D006989 1.1e-12 76.3 54 66.7
Haze_16346 Corylus avellana HOM05D005658 ORTHO05D006989 1.1e-12 76.3 58 63.8
Eucgr.J02954 Eucalyptus grandis HOM05D005658 ORTHO05D006989 1.1e-12 76.3 58 58.6
Sed0018991 Sechium edule HOM05D005658 ORTHO05D006989 1.1e-12 76.3 58 56.9
GSVIVG01017053001 Vitis vinifera HOM05D005658 ORTHO05D006989 1.1e-12 76.3 58 58.6
Manes.04G130900 Manihot esculenta HOM05D005658 ORTHO05D006989 1.4e-12 75.9 58 58.6
RcHm_v2.0_Chr2g0139241 Rosa chinensis HOM05D005658 ORTHO05D006989 1.4e-12 75.9 58 62.1
TAR383G0711 Trochodendron aralioides HOM05D005658 ORTHO05D006989 1.4e-12 75.9 58 62.1
MSTRG.9467 Avicennia marina HOM05D005658 ORTHO05D006989 1.8e-12 75.5 54 66.7
SGA_v2.0_scaffold4G02011 Striga asiatica HOM05D005658 ORTHO05D006989 2.4e-12 75.1 58 58.6
Aqoxy7G01547 Aquilegia oxysepala HOM05D005658 ORTHO05D006989 3.1e-12 74.7 59 55.9
AUR62011683 Chenopodium quinoa HOM05D005658 ORTHO05D006989 3.1e-12 74.7 58 56.9
Lsat_1_v5_gn_5_131001 Lactuca sativa HOM05D000012 ORTHO05D000804 3.1e-12 74.7 53 62.3
Nitab4.5_0001315g0030 Nicotiana tabacum HOM05D005658 ORTHO05D006989 3.1e-12 74.7 54 63.0
Cfa002103 Carpinus fangiana HOM05D005658 ORTHO05D006989 4.1e-12 74.3 58 62.1
Actinidia08995 Actinidia chinensis HOM05D005658 ORTHO05D006989 5.3e-12 73.9 55 65.5
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 5.3e-12 73.9 55 63.6
Rhsim12G0201100 Rhododendron simsii HOM05D005658 ORTHO05D006989 5.3e-12 73.9 54 63.0
CAN.G438.34 Capsicum annuum HOM05D005658 ORTHO05D006989 7.0e-12 73.6 56 58.9
C05p50310 Brassica napus HOM05D005658 ORTHO05D006989 9.1e-12 73.2 59 59.3
DCAR_016205 Daucus carota HOM05D005658 ORTHO05D006989 9.1e-12 73.2 50 70.0
Peaxi162Scf00015g00132 Petunia axillaris HOM05D005658 ORTHO05D006989 9.1e-12 73.2 57 57.9
Solyc03g120540.3 Solanum lycopersicum HOM05D005658 ORTHO05D006989 9.1e-12 73.2 56 57.1
Nitab4.5_0004205g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 1.2e-11 72.8 54 63.0
Manes.11G037100 Manihot esculenta HOM05D005658 ORTHO05D006989 2.0e-11 72.0 54 59.3
arahy.Tifrunner.gnm1.ann1.JS39C6 Arachis hypogaea HOM05D005658 ORTHO05D006989 2.6e-11 71.6 55 69.1
AUR62016508 Chenopodium quinoa HOM05D005658 ORTHO05D006989 2.6e-11 71.6 54 61.1
Cc04_g02920 Coffea canephora HOM05D005658 ORTHO05D006989 2.6e-11 71.6 54 63.0
Sopen03g039400 Solanum pennellii HOM05D005658 ORTHO05D006989 2.6e-11 71.6 56 57.1
PSO210G2136 Papaver somniferum HOM05D005658 ORTHO05D006989 4.5e-11 70.9 58 55.2
Ah.01g021740 Amaranthus hybridus HOM05D005658 ORTHO05D006989 5.9e-11 70.5 58 53.4
SalBow7G0412 Salvia bowleyana HOM05D005658 ORTHO05D006989 5.9e-11 70.5 54 61.1
Nn3g18122 Nelumbo nucifera HOM05D005658 ORTHO05D006989 7.7e-11 70.1 58 56.9
GSVIVG01017054001 Vitis vinifera HOM05D005658 ORTHO05D006989 7.7e-11 70.1 51 62.7
CSS0031663 Camellia sinensis var. sinensis HOM05D005658 ORTHO05D006989 1.0e-10 69.7 56 58.9
ClCG09G001890 Citrullus lanatus HOM05D005658 ORTHO05D006989 1.0e-10 69.7 58 51.7
CDE08G1506 Ceratophyllum demersum HOM05D005658 ORTHO05D006989 1.3e-10 69.3 58 56.9
MELO3C027085.2 Cucumis melo HOM05D005658 ORTHO05D006989 1.3e-10 69.3 58 50.0
Lj9A509T93 Lonicera japonica HOM05D005658 ORTHO05D006989 1.3e-10 69.3 54 63.0
SGA_v2.0_scaffold68G22977 Striga asiatica HOM05D005658 ORTHO05D006989 1.3e-10 69.3 54 61.1
CsaV3_7G033450 Cucumis sativus L. HOM05D005658 ORTHO05D006989 1.7e-10 68.9 58 48.3
Nitab4.5_0001968g0140 Nicotiana tabacum HOM05D005658 ORTHO05D006989 1.7e-10 68.9 55 63.6
PGSC0003DMG400002629 Solanum tuberosum HOM05D005658 ORTHO05D006989 2.2e-10 68.6 56 55.4
PSO210G3060 Papaver somniferum HOM05D005658 ORTHO05D006989 3.8e-10 67.8 51 60.8
ECA234G0336 Erigeron canadensis HOM05D005658 ORTHO05D006989 5.0e-10 67.4 53 58.5
Migut.D01014 Erythranthe guttata HOM05D005658 ORTHO05D006989 6.5e-10 67.0 54 57.4
Os02g0276400 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 6.5e-10 67.0 56 53.6
AUR62016509 Chenopodium quinoa HOM05D005658 ORTHO05D006989 8.5e-10 66.6 54 57.4
HPP92_003927 Vanilla planifolia HOM05D005658 ORTHO05D006989 1.5e-09 65.9 65 49.2
Sopen12g022580 Solanum pennellii HOM05D005658 ORTHO05D006989 1.9e-09 65.5 51 66.7
HanXRQChr10g0313501 Helianthus annuus HOM05D005658 ORTHO05D006989 2.5e-09 65.1 53 58.5
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 5.5e-09 63.9 60 51.7
Zm00001eb237290 Zea mays HOM05D005658 ORTHO05D006989 5.5e-09 63.9 53 56.6
Sed0023183 Sechium edule HOM05D005658 ORTHO05D006989 7.2e-09 63.5 58 46.6
SalBow7G1899 Salvia bowleyana HOM05D005658 ORTHO05D006989 9.4e-09 63.2 54 55.6
unitig_746.g26661 Utricularia gibba HOM05D005658 ORTHO05D006989 9.4e-09 63.2 52 57.7
ATR0736G109 Amborella trichopoda HOM05D005658 ORTHO05D006989 1.6e-08 62.4 54 51.9
PSO421G0294 Papaver somniferum HOM05D005658 ORTHO05D006989 6.1e-08 60.5 51 54.9
Mapoly0052s0007 Marchantia polymorpha HOM05D005658 ORTHO05D006989 1.0e-07 59.7 56 42.9
Pp3c13_4590 Physcomitrium patens HOM05D005658 ORTHO05D006989 1.0e-07 59.7 54 44.4
Sed0000814 Sechium edule HOM05D005658 ORTHO05D006989 2.3e-07 58.5 53 49.1
FAN05G4480 Fragaria x ananassa HOM05D005658 ORTHO05D006989 5.2e-07 57.4 38 63.2
SEGI_12338 Sequoiadendron giganteum HOM05D005658 ORTHO05D006989 1.2e-06 56.2 54 46.3
Sc12g0009500 Simmondsia chinensis HOM05D005658 ORTHO05D006989 1.5e-06 55.8 42 61.9
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 5.7e-06 53.9 36 75.0
MBI04_g04855_MAGBIO Magnolia biondii HOM05D005658 ORTHO05D006989 5.7e-06 53.9 50 50.0
SMO147G0229 Selaginella moellendorffii HOM05D005658 ORTHO05D006989 5.7e-06 53.9 52 50.0


User provided reference genes

Program Settings