Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G13457 Trifolium pratense HOM05D007332 ORTHO05D009297 1.3e-90 336.3 164 100.0
Psat5g085840 Pisum sativum HOM05D007332 ORTHO05D009297 1.3e-72 276.6 165 83.0
Medtr3g088400 Medicago truncatula HOM05D007332 ORTHO05D009297 1.2e-70 270.0 170 84.1
Lj1g0005314 Lotus japonicus HOM05D007332 ORTHO05D009297 2.7e-62 242.3 168 74.4
Phvul.009G128000 Phaseolus vulgaris HOM05D007332 ORTHO05D009297 1.2e-59 233.4 160 73.8
Glyma.06G115900 Glycine max HOM05D007332 ORTHO05D009297 4.7e-59 231.5 160 72.5
Glyma.04G246900 Glycine max HOM05D007332 ORTHO05D009297 1.2e-57 226.9 163 73.6
VMungo1309G0081 Vigna mungo HOM05D007332 ORTHO05D009297 2.0e-57 226.1 160 71.2
Ca_16594_v3 Cicer arietinum L. HOM05D007332 ORTHO05D009297 5.7e-49 198.0 144 72.9
arahy.Tifrunner.gnm1.ann1.ILK6IZ Arachis hypogaea HOM05D007332 ORTHO05D009297 1.6e-43 179.9 181 56.9
CiPaw.15G033700 Carya illinoinensis HOM05D007332 ORTHO05D009297 7.8e-38 161.0 192 54.2
Cfa018560 Carpinus fangiana HOM05D007332 ORTHO05D009297 3.0e-37 159.1 182 54.4
QL09p033201 Quercus lobata HOM05D007332 ORTHO05D009297 1.9e-36 156.4 192 50.0
Atru.chr13.1537 Acer truncatum HOM05D007332 ORTHO05D009297 1.6e-35 153.3 189 50.3
FAN24G1344 Fragaria x ananassa HOM05D007332 ORTHO05D009297 1.4e-34 150.2 190 51.6
FvH4_2g27560 Fragaria vesca HOM05D007332 ORTHO05D009297 1.8e-34 149.8 190 51.1
Manes.02G166600 Manihot esculenta HOM05D007332 ORTHO05D009297 1.8e-34 149.8 187 49.7
TWI34G0633 Tripterygium wilfordii HOM05D007332 ORTHO05D009297 2.3e-34 149.4 184 50.5
arahy.Tifrunner.gnm1.ann1.34D5TH Arachis hypogaea HOM05D007332 ORTHO05D009297 3.1e-34 149.1 156 55.8
FAN20G0761 Fragaria x ananassa HOM05D007332 ORTHO05D009297 4.0e-34 148.7 190 51.1
FAN27G1631 Fragaria x ananassa HOM05D007332 ORTHO05D009297 8.9e-34 147.5 190 51.1
Ciclev10002610m.g Citrus clementina HOM05D007332 ORTHO05D009297 1.5e-33 146.7 186 48.9
RcHm_v2.0_Chr6g0296401 Rosa chinensis HOM05D007332 ORTHO05D009297 5.8e-33 144.8 191 46.6
arahy.Tifrunner.gnm1.ann1.396V4Q Arachis hypogaea HOM05D007332 ORTHO05D009297 3.2e-31 139.0 156 52.6
Dinv27272 Davidia involucrata HOM05D001470 ORTHO05D006430 2.1e-30 136.3 186 50.0
Potri.002G080200 Populus trichocarpa HOM05D007332 ORTHO05D009297 3.5e-30 135.6 217 43.8
Hma1.2p1_0542F.1_g174970 Hydrangea macrophylla HOM05D007332 ORTHO05D009297 1.0e-29 134.0 186 46.8
Potri.005G181200 Populus trichocarpa HOM05D007332 ORTHO05D009297 1.0e-29 134.0 196 46.4
COL.COLO4_03954 Corchorus olitorius HOM05D007332 ORTHO05D009297 1.3e-29 133.7 208 43.8
MELO3C010504.2 Cucumis melo HOM05D007332 ORTHO05D009297 1.3e-29 133.7 172 47.7
Sabra02G0062700 Salix brachista HOM05D007332 ORTHO05D009297 1.7e-29 133.3 182 51.1
ClCG11G015900 Citrullus lanatus HOM05D007332 ORTHO05D009297 1.2e-27 127.1 167 50.3
CsaV3_4G028070 Cucumis sativus L. HOM05D007332 ORTHO05D009297 1.2e-27 127.1 166 47.6
Eucgr.F04333 Eucalyptus grandis HOM05D007332 ORTHO05D009297 1.6e-27 126.7 203 46.3
PGR044G1395 Punica granatum HOM05D007332 ORTHO05D009297 2.1e-27 126.3 198 43.9
CSS0048102 Camellia sinensis var. sinensis HOM05D007332 ORTHO05D009297 2.8e-27 125.9 209 42.1
Peaxi162Scf00310g00043 Petunia axillaris HOM05D007332 ORTHO05D009297 4.7e-27 125.2 188 45.7
Gohir.A05G237300 Gossypium hirsutum HOM05D007332 ORTHO05D009297 6.2e-27 124.8 197 41.6
Nitab4.5_0000111g0100 Nicotiana tabacum HOM05D007332 ORTHO05D009297 6.2e-27 124.8 192 46.4
CAN.G1486.2 Capsicum annuum HOM05D007332 ORTHO05D009297 1.1e-26 124.0 192 43.2
Duzib093G1986 Durio zibethinus HOM05D007332 ORTHO05D009297 1.1e-26 124.0 199 42.2
Gorai.009G248200 Gossypium raimondii HOM05D007332 ORTHO05D009297 1.1e-26 124.0 197 41.6
Gohir.D05G239400 Gossypium hirsutum HOM05D007332 ORTHO05D009297 3.1e-26 122.5 197 41.1
Duzib116G0046 Durio zibethinus HOM05D007332 ORTHO05D009297 2.0e-25 119.8 194 42.3
Nitab4.5_0006720g0020 Nicotiana tabacum HOM05D007332 ORTHO05D009297 2.0e-25 119.8 193 43.5
Cc10_g12430 Coffea canephora HOM05D007332 ORTHO05D009297 4.4e-25 118.6 216 42.1
FAN15G1303 Fragaria x ananassa HOM05D007332 ORTHO05D009297 7.5e-25 117.9 161 47.8
PGSC0003DMG400024564 Solanum tuberosum HOM05D007332 ORTHO05D009297 7.5e-25 117.9 191 44.0
Solyc03g113480.1 Solanum lycopersicum HOM05D007332 ORTHO05D009297 1.7e-24 116.7 194 42.3
Gohir.A06G046800 Gossypium hirsutum HOM05D007332 ORTHO05D009297 2.2e-24 116.3 175 44.6
Gorai.010G052700 Gossypium raimondii HOM05D007332 ORTHO05D009297 2.2e-24 116.3 173 46.2
Sopen03g032530 Solanum pennellii HOM05D007332 ORTHO05D009297 2.9e-24 115.9 197 41.6
MD15G1344600 Malus domestica HOM05D007332 ORTHO05D009297 6.4e-24 114.8 198 39.9
MSTRG.1422 Avicennia marina HOM05D007332 ORTHO05D009297 8.3e-24 114.4 190 42.6
TAR381G0705 Trochodendron aralioides HOM05D007332 ORTHO05D009297 3.2e-23 112.5 169 45.0
Prupe.1G492300 Prunus persica HOM05D007332 ORTHO05D009297 5.4e-23 111.7 193 39.9
SalBow7G3495 Salvia bowleyana HOM05D007332 ORTHO05D009297 1.6e-22 110.2 171 45.6
ECA232G0093 Erigeron canadensis HOM05D007332 ORTHO05D009297 5.1e-21 105.1 165 43.6
Nn1g08887 Nelumbo nucifera HOM05D007332 ORTHO05D009297 5.1e-21 105.1 196 37.8
Dinv14654 Davidia involucrata HOM05D007332 ORTHO05D009297 5.6e-20 101.7 169 40.8
Sabra05G0137200 Salix brachista HOM05D007332 ORTHO05D009297 3.6e-19 99.0 174 42.5
PGSC0003DMG400006046 Solanum tuberosum HOM05D007332 ORTHO05D009297 3.6e-19 99.0 179 40.8
SGA_v2.0_scaffold52G18934 Striga asiatica HOM05D007332 ORTHO05D009297 3.1e-18 95.9 178 41.0
Migut.C01053 Erythranthe guttata HOM05D007332 ORTHO05D009297 4.0e-18 95.5 179 40.8
Hma1.2p1_0542F.1_g175020 Hydrangea macrophylla HOM05D007332 ORTHO05D009297 5.2e-18 95.1 152 43.4
THA.LOC104813672 Tarenaya hassleriana HOM05D007332 ORTHO05D009297 8.9e-18 94.4 228 35.1
Nn5g28415 Nelumbo nucifera HOM05D007332 ORTHO05D009297 3.4e-17 92.4 158 39.9
HanXRQChr09g0260291 Helianthus annuus HOM05D007332 ORTHO05D009297 7.6e-17 91.3 168 39.9
Sp5g32550 Schrenkiella parvula HOM05D007332 ORTHO05D009297 1.9e-15 86.7 227 33.9
Lalb_Chr17g0343611 Lupinus albus HOM05D007332 ORTHO05D009297 4.2e-15 85.5 171 41.5
Thecc.08G130400 Theobroma cacao HOM05D007332 ORTHO05D009297 4.2e-15 85.5 200 35.0
AL2G37600 Arabidopsis lyrata HOM05D007332 ORTHO05D009297 5.4e-15 85.1 234 33.8
CARHR070880 Cardamine hirsuta HOM05D007332 ORTHO05D009297 5.4e-15 85.1 236 30.9
Lsat_1_v5_gn_4_74261 Lactuca sativa HOM05D007332 ORTHO05D009297 7.1e-15 84.7 174 37.4
BcaB05g25043 Brassica carinata HOM05D007332 ORTHO05D009297 2.1e-14 83.2 227 33.5
BolC6t40174H Brassica oleracea HOM05D007332 ORTHO05D009297 3.5e-14 82.4 236 30.5
Thhalv10019445m.g Eutrema salsugineum HOM05D007332 ORTHO05D009297 3.5e-14 82.4 229 31.4
AT1G77400 Arabidopsis thaliana HOM05D007332 ORTHO05D009297 4.6e-14 82.0 234 34.2
BraA07t31813Z Brassica rapa HOM05D007332 ORTHO05D009297 4.6e-14 82.0 236 30.9
Carub.0002s2429 Capsella rubella HOM05D007332 ORTHO05D009297 6.0e-14 81.6 238 32.4
BcaB03g15951 Brassica carinata HOM05D007332 ORTHO05D009297 7.8e-14 81.3 234 30.8
A07p42920 Brassica napus HOM05D007332 ORTHO05D009297 7.8e-14 81.3 240 30.0
C02p17420 Brassica napus HOM05D007332 ORTHO05D009297 7.8e-14 81.3 213 33.3
BolC2t07856H Brassica oleracea HOM05D007332 ORTHO05D009297 7.8e-14 81.3 213 33.3
MBI06_g33108_MAGBIO Magnolia biondii HOM05D007332 ORTHO05D009297 1.0e-13 80.9 172 37.8
C06p51540 Brassica napus HOM05D007332 ORTHO05D009297 1.3e-13 80.5 236 30.5
BcaC08g47611 Brassica carinata HOM05D007332 ORTHO05D009297 6.6e-13 78.2 233 29.6
Sed0015452 Sechium edule HOM05D007332 ORTHO05D009297 6.6e-13 78.2 126 39.7
DCAR_003566 Daucus carota HOM05D007332 ORTHO05D009297 8.7e-13 77.8 191 33.0
Aa31LG4G7420 Aethionema arabicum HOM05D007332 ORTHO05D009297 4.3e-12 75.5 233 31.8
Actinidia15225 Actinidia chinensis HOM05D007332 ORTHO05D009297 9.6e-12 74.3 107 45.8
BcaC03g15733 Brassica carinata HOM05D007332 ORTHO05D009297 1.8e-10 70.1 231 31.2
CANSAT25G2745 Cannabis sativa HOM05D007332 ORTHO05D009297 3.1e-10 69.3 170 34.7
BcaC08g47610 Brassica carinata HOM05D007332 ORTHO05D009297 6.9e-10 68.2 222 29.7
Aqoxy5G02371 Aquilegia oxysepala HOM05D007332 ORTHO05D009297 2.0e-09 66.6 134 35.8
Ah.03g139000 Amaranthus hybridus HOM05D007332 ORTHO05D009297 4.9e-08 62.0 161 36.6
BolC2t09481H Brassica oleracea HOM05D007332 ORTHO05D009297 1.1e-07 60.8 226 29.6
BraA02t07143Z Brassica rapa HOM05D007332 ORTHO05D009297 1.9e-07 60.1 208 30.8
C02p34520 Brassica napus HOM05D007332 ORTHO05D009297 2.4e-07 59.7 206 30.1
Migut.L00247 Erythranthe guttata HOM05D007332 ORTHO05D009297 2.1e-06 56.6 105 40.0
Migut.L00823 Erythranthe guttata HOM05D007332 ORTHO05D009297 2.1e-06 56.6 105 40.0
A02p21250 Brassica napus HOM05D007332 ORTHO05D009297 3.5e-06 55.8 190 28.9
THA.LOC104800214 Tarenaya hassleriana HOM05D007332 ORTHO05D009297 3.5e-06 55.8 155 36.8


User provided reference genes

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