Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G13428 Trifolium pratense HOM05D000013 ORTHO05D000011 1.2e-64 249.6 123 100.0
TPR.G13430 Trifolium pratense HOM05D000013 ORTHO05D000011 1.0e-21 107.1 117 53.8
TPR.G13432 Trifolium pratense HOM05D000013 ORTHO05D000011 1.2e-19 100.1 63 82.5
TPR.G13419 Trifolium pratense HOM05D000013 ORTHO05D000011 2.3e-18 95.9 63 79.4
TPR.G13415 Trifolium pratense HOM05D000013 ORTHO05D000011 6.7e-18 94.4 63 74.6
TPR.G13425 Trifolium pratense HOM05D000013 ORTHO05D000011 6.7e-18 94.4 63 79.4
TPR.G29459 Trifolium pratense HOM05D000013 ORTHO05D000011 1.9e-17 92.8 66 75.8
TPR.G13420 Trifolium pratense HOM05D000013 ORTHO05D000011 2.5e-17 92.4 63 76.2
Medtr7g056617 Medicago truncatula HOM05D000013 ORTHO05D000011 5.7e-17 91.3 64 75.0
Medtr7g056680 Medicago truncatula HOM05D000013 ORTHO05D000011 5.7e-17 91.3 63 73.0
TPR.G28150 Trifolium pratense HOM05D000013 ORTHO05D000011 7.4e-17 90.9 64 75.0
TPR.G8560 Trifolium pratense HOM05D000013 ORTHO05D000011 1.3e-16 90.1 67 70.1
TPR.G21450 Trifolium pratense HOM05D000013 ORTHO05D000011 2.8e-16 89.0 64 71.9
Medtr7g056667 Medicago truncatula HOM05D000013 ORTHO05D000011 1.4e-15 86.7 63 74.6
Medtr7g056593 Medicago truncatula HOM05D000013 ORTHO05D000011 1.8e-15 86.3 56 80.4
Medtr7g056663 Medicago truncatula HOM05D000013 ORTHO05D000011 4.1e-15 85.1 63 68.3
Glyma.08G352300 Glycine max HOM05D000013 ORTHO05D000011 7.7e-14 80.9 63 66.7
Medtr7g056670 Medicago truncatula HOM05D000013 ORTHO05D000011 3.8e-13 78.6 41 90.2
Medtr7g056640 Medicago truncatula HOM05D000013 ORTHO05D000011 8.5e-13 77.4 45 80.0
TPR.G14514 Trifolium pratense HOM05D000013 ORTHO05D000011 1.9e-12 76.3 59 66.1
Medtr7g056647 Medicago truncatula HOM05D000013 ORTHO05D000011 2.5e-12 75.9 64 60.9
Lj1g0027360 Lotus japonicus HOM05D000013 ORTHO05D000011 3.2e-12 75.5 63 66.7
Medtr4g098890 Medicago truncatula HOM05D000087 ORTHO05D000011 7.2e-12 74.3 39 87.2
VMungo1383G1776 Vigna mungo HOM05D000013 ORTHO05D000011 7.2e-12 74.3 63 65.1
Phvul.008G127374 Phaseolus vulgaris HOM05D000013 ORTHO05D000011 9.4e-12 73.9 63 63.5
Glyma.08G352200 Glycine max HOM05D000013 ORTHO05D000011 1.2e-11 73.6 63 63.5
TPR.G14536 Trifolium pratense HOM05D000013 ORTHO05D000011 1.2e-11 73.6 50 70.0
Ca_27601_v3 Cicer arietinum L. HOM05D000013 ORTHO05D000011 2.7e-11 72.4 49 71.4
Ca_01987_v3 Cicer arietinum L. HOM05D000013 ORTHO05D000011 3.6e-11 72.0 44 72.7
Phvul.008G127100 Phaseolus vulgaris HOM05D000013 ORTHO05D000011 7.9e-11 70.9 63 61.9
Medtr7g056420 Medicago truncatula HOM05D000013 ORTHO05D000011 1.4e-10 70.1 42 78.6
Medtr7g056430 Medicago truncatula HOM05D000013 ORTHO05D000011 1.4e-10 70.1 42 78.6
Medtr7g056510 Medicago truncatula HOM05D000013 ORTHO05D000011 3.0e-10 68.9 40 77.5
Glyma.08G352100 Glycine max HOM05D000013 ORTHO05D000011 3.9e-10 68.6 63 61.9
Ca_27734_v3 Cicer arietinum L. HOM05D000013 ORTHO05D000011 1.1e-09 67.0 41 75.6
VMungo1383G3083 Vigna mungo HOM05D000013 ORTHO05D000011 1.5e-09 66.6 63 57.1
Lj6g0010821 Lotus japonicus HOM05D000013 ORTHO05D000011 2.0e-09 66.2 63 55.6
TWI63G1707 Tripterygium wilfordii HOM05D000013 ORTHO05D000011 2.6e-09 65.9 46 67.4
Lj2C278T4 Lonicera japonica HOM05D000013 ORTHO05D000011 5.7e-09 64.7 70 55.7
Medtr7g056650 Medicago truncatula HOM05D000013 ORTHO05D000011 5.7e-09 64.7 35 88.6
Lj2C278G6 Lonicera japonica HOM05D000013 ORTHO05D000011 7.4e-09 64.3 43 65.1
Psat3g145720 Pisum sativum HOM05D000013 ORTHO05D000011 1.7e-08 63.2 51 64.7
Potri.004G027300 Populus trichocarpa HOM05D000013 ORTHO05D000011 2.8e-08 62.4 65 52.3
Lalb_Chr20g0122471 Lupinus albus HOM05D000013 ORTHO05D000011 6.3e-08 61.2 57 56.1
Phvul.008G126800 Phaseolus vulgaris HOM05D000013 ORTHO05D000011 8.2e-08 60.8 56 58.9
Potri.011G039200 Populus trichocarpa HOM05D000013 ORTHO05D000011 8.2e-08 60.8 63 46.0
TWI63G0844 Tripterygium wilfordii HOM05D000013 ORTHO05D000011 8.2e-08 60.8 58 53.4
VMungo1383G3482 Vigna mungo HOM05D000013 ORTHO05D000011 8.2e-08 60.8 52 61.5
Lalb_Chr15g0090161 Lupinus albus HOM05D000013 ORTHO05D000011 1.1e-07 60.5 49 61.2
EL10Ac8g19967 Beta vulgaris HOM05D000013 ORTHO05D000011 3.1e-07 58.9 43 60.5
QL02p099014 Quercus lobata HOM05D000013 ORTHO05D000011 4.1e-07 58.5 57 52.6
AUR62042291 Chenopodium quinoa HOM05D000013 ORTHO05D000011 5.3e-07 58.2 52 55.8
Sc18g0005050 Simmondsia chinensis HOM05D000013 ORTHO05D000011 7.0e-07 57.8 52 51.9
CiPaw.09G156000 Carya illinoinensis HOM05D000013 ORTHO05D000011 9.1e-07 57.4 49 57.1
Potri.011G039300 Populus trichocarpa HOM05D000013 ORTHO05D000011 9.1e-07 57.4 55 47.3
Potri.011G039100 Populus trichocarpa HOM05D000013 ORTHO05D000011 1.2e-06 57.0 49 53.1
TAR629G3453 Trochodendron aralioides HOM05D000013 ORTHO05D000011 1.2e-06 57.0 41 63.4
CSS0050196 Camellia sinensis var. sinensis HOM05D000013 ORTHO05D000011 1.5e-06 56.6 55 56.4
AUR62036839 Chenopodium quinoa HOM05D000013 ORTHO05D000011 1.5e-06 56.6 39 64.1
Potri.004G027400 Populus trichocarpa HOM05D000013 ORTHO05D000011 1.5e-06 56.6 60 51.7
Rhsim13G0167300 Rhododendron simsii HOM05D000013 ORTHO05D000011 2.0e-06 56.2 51 56.9
Sed0022293 Sechium edule HOM05D000013 ORTHO05D000011 2.0e-06 56.2 58 51.7
AUR62014665 Chenopodium quinoa HOM05D000013 ORTHO05D000011 2.6e-06 55.8 57 49.1
Dinv02839 Davidia involucrata HOM05D000013 ORTHO05D000011 2.6e-06 55.8 46 56.5
Lalb_Chr18g0059021 Lupinus albus HOM05D000013 ORTHO05D000011 2.6e-06 55.8 66 42.4
MBI02_g43688_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D000011 2.6e-06 55.8 51 58.8
Potri.011G039400 Populus trichocarpa HOM05D000013 ORTHO05D000011 2.6e-06 55.8 55 45.5
Hund21295 Selenicereus undatus HOM05D000013 ORTHO05D000011 2.6e-06 55.8 55 54.5
RhsimUnG0090800 Rhododendron simsii HOM05D000013 ORTHO05D000011 3.4e-06 55.5 51 56.9
Sed0006168 Sechium edule HOM05D000013 ORTHO05D000011 3.4e-06 55.5 57 52.6
Sc08g0003170 Simmondsia chinensis HOM05D000013 ORTHO05D000011 3.4e-06 55.5 52 51.9
TPR.G19609 Trifolium pratense HOM05D000013 ORTHO05D000011 3.4e-06 55.5 40 65.0
TPR.G19621 Trifolium pratense HOM05D000013 ORTHO05D000011 3.4e-06 55.5 40 65.0
CiPaw.10G115100 Carya illinoinensis HOM05D000013 ORTHO05D000011 4.5e-06 55.1 54 57.4
Potri.011G039000 Populus trichocarpa HOM05D000013 ORTHO05D000011 4.5e-06 55.1 63 44.4
TPR.G13702 Trifolium pratense HOM05D000013 ORTHO05D000011 4.5e-06 55.1 70 44.3
VMungo1383G0146 Vigna mungo HOM05D000013 ORTHO05D000011 4.5e-06 55.1 129 33.3
AUR62014670 Chenopodium quinoa HOM05D000013 ORTHO05D000011 5.9e-06 54.7 48 54.2
COL.COLO4_37816 Corchorus olitorius HOM05D000013 ORTHO05D000011 5.9e-06 54.7 59 52.5
Dinv36190 Davidia involucrata HOM05D000013 ORTHO05D000011 5.9e-06 54.7 52 51.9
Glyma.16G093900 Glycine max HOM05D000013 ORTHO05D000011 5.9e-06 54.7 65 49.2
Lj2C278G3 Lonicera japonica HOM05D000013 ORTHO05D000011 5.9e-06 54.7 49 53.1
Thecc.07G066500 Theobroma cacao HOM05D000013 ORTHO05D000011 5.9e-06 54.7 62 51.6
EL10Ac8g19976 Beta vulgaris HOM05D000013 ORTHO05D000011 7.7e-06 54.3 38 60.5
CSS0003526 Camellia sinensis var. sinensis HOM05D000013 ORTHO05D000011 7.7e-06 54.3 41 58.5
Lj6g0027502 Lotus japonicus HOM05D000013 ORTHO05D000011 7.7e-06 54.3 52 50.0
Lalb_Chr18g0058991 Lupinus albus HOM05D000013 ORTHO05D000011 7.7e-06 54.3 66 42.4
Rhsim13G0167400 Rhododendron simsii HOM05D000013 ORTHO05D000011 7.7e-06 54.3 51 56.9
TAR376G0657 Trochodendron aralioides HOM05D000013 ORTHO05D000011 7.7e-06 54.3 54 53.7


User provided reference genes

Program Settings