Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G13416 Trifolium pratense HOM05D004059 ORTHO05D004591 2.7e-297 1024.6 533 100.0
Medtr2g039620 Medicago truncatula HOM05D004059 ORTHO05D004591 1.8e-229 799.3 534 82.8
Psat1g140200 Pisum sativum HOM05D004059 ORTHO05D004591 2.4e-213 745.7 533 76.9
Lj6g0002908 Lotus japonicus HOM05D004059 ORTHO05D004591 7.6e-167 591.3 542 66.1
Glyma.09G064200 Glycine max HOM05D004059 ORTHO05D004591 6.4e-158 561.6 558 61.5
VMungo1309G0851 Vigna mungo HOM05D004059 ORTHO05D004591 3.0e-155 552.7 539 62.5
Phvul.009G231600 Phaseolus vulgaris HOM05D004059 ORTHO05D004591 1.1e-154 550.8 532 63.0
Glyma.15G170500 Glycine max HOM05D004059 ORTHO05D004591 2.3e-147 526.6 510 63.7
Glyma.17G054000 Glycine max HOM05D004059 ORTHO05D004591 5.1e-115 419.1 562 51.6
arahy.Tifrunner.gnm1.ann1.H4FASW Arachis hypogaea HOM05D004059 ORTHO05D004591 2.0e-114 417.2 508 55.1
CiPaw.03G214200 Carya illinoinensis HOM05D004059 ORTHO05D004591 4.8e-105 386.0 547 49.9
Cfa003070 Carpinus fangiana HOM05D004059 ORTHO05D004591 1.0e-102 378.3 539 47.9
Lj4g0028074 Lotus japonicus HOM05D004059 ORTHO05D004591 1.0e-102 378.3 545 48.3
MD02G1081600 Malus domestica HOM05D004059 ORTHO05D004591 4.2e-101 372.9 573 46.2
Prupe.7G207500 Prunus persica HOM05D004059 ORTHO05D004591 8.0e-100 368.6 574 44.9
Dinv36776 Davidia involucrata HOM05D004059 ORTHO05D004591 4.1e-96 356.3 542 44.5
QL02p062365 Quercus lobata HOM05D004059 ORTHO05D004591 2.7e-95 353.6 547 45.2
Haze_25925 Corylus avellana HOM05D004059 ORTHO05D004591 1.2e-92 344.7 553 44.7
VMungo1215G3226 Vigna mungo HOM05D004059 ORTHO05D004591 6.1e-92 342.4 535 45.0
Lalb_Chr08g0232291 Lupinus albus HOM05D004059 ORTHO05D004591 1.4e-91 341.3 416 55.0
Hma1.2p1_1838F.1_g304870 Hydrangea macrophylla HOM05D004059 ORTHO05D004591 5.2e-91 339.3 536 43.8
FAN28G1400 Fragaria x ananassa HOM05D004059 ORTHO05D004591 2.2e-89 334.0 603 41.1
RcHm_v2.0_Chr2g0093571 Rosa chinensis HOM05D004059 ORTHO05D004591 6.3e-89 332.4 587 42.4
Sed0008144 Sechium edule HOM05D004059 ORTHO05D004591 1.8e-88 330.9 568 42.4
Lalb_Chr11g0074551 Lupinus albus HOM05D004059 ORTHO05D004591 5.4e-88 329.3 416 53.4
FAN19G2456 Fragaria x ananassa HOM05D004059 ORTHO05D004591 2.7e-87 327.0 601 41.8
PGR102G2684 Punica granatum HOM05D004059 ORTHO05D004591 4.5e-87 326.2 567 42.2
FAN23G2659 Fragaria x ananassa HOM05D004059 ORTHO05D004591 1.1e-85 321.6 606 41.1
FAN26G3139 Fragaria x ananassa HOM05D004059 ORTHO05D004591 1.1e-85 321.6 595 40.3
MD15G1208900 Malus domestica HOM05D004059 ORTHO05D004591 1.1e-85 321.6 566 42.4
TAR624G0558 Trochodendron aralioides HOM05D004059 ORTHO05D004591 7.2e-85 318.9 544 41.2
Cc06_g11520 Coffea canephora HOM05D004059 ORTHO05D004591 6.1e-84 315.8 556 43.3
Sabra06G0117700 Salix brachista HOM05D004059 ORTHO05D004591 1.4e-83 314.7 590 41.9
Phvul.003G135700 Phaseolus vulgaris HOM05D004059 ORTHO05D004591 5.2e-83 312.8 520 43.5
Duzib187G0197 Durio zibethinus HOM05D004059 ORTHO05D004591 6.8e-83 312.4 550 43.8
FAN26G1668 Fragaria x ananassa HOM05D004059 ORTHO05D004591 6.8e-83 312.4 588 40.1
Atru.chr7.1612 Acer truncatum HOM05D004059 ORTHO05D004591 3.4e-82 310.1 536 43.5
Eucgr.C03476 Eucalyptus grandis HOM05D004059 ORTHO05D004591 3.4e-82 310.1 563 40.9
GSVIVG01015189001 Vitis vinifera HOM05D004059 ORTHO05D004591 7.5e-82 308.9 529 41.6
Potri.006G148800 Populus trichocarpa HOM05D004059 ORTHO05D004591 2.2e-81 307.4 606 40.6
VMungo1215G0279 Vigna mungo HOM05D004059 ORTHO05D004591 2.2e-81 307.4 524 43.9
CSS0003764 Camellia sinensis var. sinensis HOM05D004059 ORTHO05D004591 3.7e-81 306.6 500 43.4
Duzib168G0233 Durio zibethinus HOM05D004059 ORTHO05D004591 8.3e-81 305.4 582 42.4
Ciclev10007937m.g Citrus clementina HOM05D004059 ORTHO05D004591 2.4e-80 303.9 574 40.8
TWI34G0199 Tripterygium wilfordii HOM05D004059 ORTHO05D004591 5.4e-80 302.8 557 41.1
FvH4_1g07710 Fragaria vesca HOM05D004059 ORTHO05D004591 9.2e-80 302.0 580 40.5
AT5G56960 Arabidopsis thaliana HOM05D004059 ORTHO05D004591 1.6e-79 301.2 543 40.9
Thecc.09G087400 Theobroma cacao HOM05D004059 ORTHO05D004591 2.7e-79 300.4 553 44.5
Manes.16G101000 Manihot esculenta HOM05D004059 ORTHO05D004591 3.5e-79 300.1 561 41.4
CSS0005796 Camellia sinensis var. sinensis HOM05D004059 ORTHO05D004591 5.9e-79 299.3 544 42.3
Actinidia29906 Actinidia chinensis HOM05D004059 ORTHO05D004591 6.6e-78 295.8 499 44.3
THA.LOC104818114 Tarenaya hassleriana HOM05D004059 ORTHO05D004591 4.3e-77 293.1 525 41.5
DCAR_011967 Daucus carota HOM05D004059 ORTHO05D004591 8.0e-76 288.9 534 40.4
Gohir.D07G011700 Gossypium hirsutum HOM05D004059 ORTHO05D004591 8.0e-76 288.9 546 41.6
BolC2t07605H Brassica oleracea HOM05D004059 ORTHO05D004591 2.3e-75 287.3 551 39.0
Oeu017604.1 Olea europaea HOM05D004059 ORTHO05D004591 6.8e-75 285.8 548 38.7
Manes.03G034700 Manihot esculenta HOM05D004059 ORTHO05D004591 8.9e-75 285.4 556 40.8
arahy.Tifrunner.gnm1.ann1.MX4JUX Arachis hypogaea HOM05D004059 ORTHO05D004591 2.0e-74 284.3 544 40.4
Rhsim05G0018600 Rhododendron simsii HOM05D004059 ORTHO05D004591 5.8e-74 282.7 499 42.3
AUR62033947 Chenopodium quinoa HOM05D004059 ORTHO05D004591 7.5e-74 282.3 559 40.1
Gorai.001G012400 Gossypium raimondii HOM05D004059 ORTHO05D004591 7.5e-74 282.3 552 41.3
BraA02t05954Z Brassica rapa HOM05D004059 ORTHO05D004591 9.8e-74 282.0 558 38.2
AUR62029052 Chenopodium quinoa HOM05D004059 ORTHO05D004591 3.7e-73 280.0 559 40.1
Carub.0008s1744 Capsella rubella HOM05D004059 ORTHO05D004591 4.9e-73 279.6 550 39.8
Nn8g38830 Nelumbo nucifera HOM05D004059 ORTHO05D004591 6.4e-73 279.3 549 38.6
Gohir.A05G030300 Gossypium hirsutum HOM05D004059 ORTHO05D004591 3.2e-72 276.9 557 38.4
TAR636G3314 Trochodendron aralioides HOM05D004059 ORTHO05D004591 4.1e-72 276.6 541 39.0
Nitab4.5_0006053g0020 Nicotiana tabacum HOM05D004059 ORTHO05D004591 5.4e-72 276.2 534 40.1
BcaC03g14194 Brassica carinata HOM05D004059 ORTHO05D004591 2.7e-71 273.9 551 38.3
C02p14760 Brassica napus HOM05D004059 ORTHO05D004591 2.7e-71 273.9 551 38.3
arahy.Tifrunner.gnm1.ann1.0BQ45N Arachis hypogaea HOM05D004059 ORTHO05D004591 4.6e-71 273.1 547 38.6
Gorai.009G031900 Gossypium raimondii HOM05D004059 ORTHO05D004591 1.7e-70 271.2 557 37.7
Gohir.D05G031700 Gossypium hirsutum HOM05D004059 ORTHO05D004591 2.3e-70 270.8 557 37.7
HanXRQChr03g0060341 Helianthus annuus HOM05D004059 ORTHO05D004591 3.0e-70 270.4 538 38.7
Aqoxy7G04020 Aquilegia oxysepala HOM05D004059 ORTHO05D004591 5.0e-70 269.6 547 38.9
Rhsim03G0231600 Rhododendron simsii HOM05D004059 ORTHO05D004591 6.6e-70 269.2 582 39.2
Nn6g35501 Nelumbo nucifera HOM05D004059 ORTHO05D004591 3.3e-69 266.9 540 37.2
Thhalv10013360m.g Eutrema salsugineum HOM05D004059 ORTHO05D004591 1.2e-68 265.0 507 39.4
ECA240G1274 Erigeron canadensis HOM05D004059 ORTHO05D004591 3.6e-68 263.5 540 39.3
vmacro06298 Vaccinium macrocarpon HOM05D004059 ORTHO05D004591 8.1e-68 262.3 523 38.4
ClCG03G015470 Citrullus lanatus HOM05D004059 ORTHO05D004591 1.8e-67 261.2 535 38.1
CsaV3_1G040580 Cucumis sativus L. HOM05D004059 ORTHO05D004591 4.0e-67 260.0 519 38.3
CAN.G52.7 Capsicum annuum HOM05D004059 ORTHO05D004591 8.9e-67 258.8 531 37.1
vmacro17254 Vaccinium macrocarpon HOM05D004059 ORTHO05D004591 1.2e-66 258.5 463 41.9
PSO210G4563 Papaver somniferum HOM05D004059 ORTHO05D004591 4.4e-66 256.5 579 35.9
A02p08850 Brassica napus HOM05D004059 ORTHO05D004591 1.7e-65 254.6 546 36.6
SGA_v2.0_scaffold62G21623 Striga asiatica HOM05D004059 ORTHO05D004591 2.2e-65 254.2 539 36.7
Lj7A677T52 Lonicera japonica HOM05D004059 ORTHO05D004591 6.4e-65 252.7 414 44.0
SalBow6G2434 Salvia bowleyana HOM05D004059 ORTHO05D004591 1.1e-64 251.9 526 38.0
Migut.J00583 Erythranthe guttata HOM05D004059 ORTHO05D004591 3.2e-64 250.4 543 37.2
PSO210G1620 Papaver somniferum HOM05D004059 ORTHO05D004591 3.2e-64 250.4 578 35.8
Nitab4.5_0002593g0060 Nicotiana tabacum HOM05D004059 ORTHO05D004591 1.2e-63 248.4 530 37.4
CANSAT56G2242 Cannabis sativa HOM05D004059 ORTHO05D004591 3.0e-62 243.8 662 34.0
MBI01_g09949_MAGBIO Magnolia biondii HOM05D004059 ORTHO05D004591 2.1e-60 237.7 500 38.4
Solyc07g039570.3 Solanum lycopersicum HOM05D004059 ORTHO05D004591 4.7e-60 236.5 551 35.9
Aa31LG3G12850 Aethionema arabicum HOM05D004059 ORTHO05D004591 1.1e-59 235.3 542 36.5
MELO3C015488.2 Cucumis melo HOM05D004059 ORTHO05D004591 1.8e-59 234.6 486 37.7
AL8G32820 Arabidopsis lyrata HOM05D004059 ORTHO05D004591 1.2e-58 231.9 508 37.4
Sopen07g018910 Solanum pennellii HOM05D004059 ORTHO05D004591 1.5e-58 231.5 490 37.6
EL10Ac8g19192 Beta vulgaris HOM05D004059 ORTHO05D004591 4.4e-58 229.9 500 38.4
CiPaw.04G148500 Carya illinoinensis HOM05D004059 ORTHO05D004591 4.4e-58 229.9 419 43.7
Cpa.g.sc61.16 Carica papaya HOM05D004059 ORTHO05D004591 2.9e-57 227.3 550 36.2
COL.COLO4_18190 Corchorus olitorius HOM05D004059 ORTHO05D004591 8.4e-57 225.7 472 39.4
Lsat_1_v5_gn_7_36701 Lactuca sativa HOM05D004059 ORTHO05D004591 8.4e-57 225.7 495 36.8
Peaxi162Scf00028g00036 Petunia axillaris HOM05D004059 ORTHO05D004591 8.4e-57 225.7 532 34.4
Gorai.010G083900 Gossypium raimondii HOM05D004059 ORTHO05D004591 7.1e-56 222.6 493 37.1
Lj4C294G8 Lonicera japonica HOM05D004059 ORTHO05D004591 3.5e-55 220.3 506 37.0
BcaB05g22300 Brassica carinata HOM05D004059 ORTHO05D004591 1.0e-54 218.8 467 37.7
SGA_v2.0_scaffold23G10028 Striga asiatica HOM05D004059 ORTHO05D004591 1.0e-54 218.8 539 32.7
CARHR270700 Cardamine hirsuta HOM05D004059 ORTHO05D004591 3.0e-54 217.2 516 35.9
Gohir.D06G071950 Gossypium hirsutum HOM05D004059 ORTHO05D004591 2.4e-51 207.6 517 35.0
DCAR_031333 Daucus carota HOM05D004059 ORTHO05D004591 8.9e-51 205.7 526 33.5
Gohir.A07G011900 Gossypium hirsutum HOM05D004059 ORTHO05D004591 7.6e-50 202.6 417 40.3
C09p48620 Brassica napus HOM05D004059 ORTHO05D004591 1.7e-49 201.4 523 35.0
Hund25946 Selenicereus undatus HOM05D004059 ORTHO05D004591 1.0e-46 192.2 403 38.7
MELO3C004627.2 Cucumis melo HOM05D004059 ORTHO05D004591 1.5e-45 188.3 543 33.3
ATR0749G078 Amborella trichopoda HOM05D004059 ORTHO05D004591 5.6e-45 186.4 542 35.4
Sp6g18670 Schrenkiella parvula HOM05D004059 ORTHO05D004591 5.6e-45 186.4 443 35.9
BcaB08g36035 Brassica carinata HOM05D004059 ORTHO05D004591 2.1e-44 184.5 475 35.2
unitig_749.g14229 Utricularia gibba HOM05D004059 ORTHO05D004591 8.1e-44 182.6 528 32.4
Peaxi162Scf00498g00042 Petunia axillaris HOM05D004059 ORTHO05D004591 1.4e-43 181.8 386 40.4
PGSC0003DMG400022043 Solanum tuberosum HOM05D004059 ORTHO05D004591 3.4e-42 177.2 398 39.2
CsaV3_2G001440 Cucumis sativus L. HOM05D004059 ORTHO05D004591 1.7e-41 174.9 526 32.7
Sc08g0008540 Simmondsia chinensis HOM05D004059 ORTHO05D004591 1.7e-41 174.9 541 32.0
Lj4C294T9 Lonicera japonica HOM05D004059 ORTHO05D004591 9.3e-40 169.1 393 37.2
TPR.G866 Trifolium pratense HOM05D004059 ORTHO05D004591 7.3e-37 159.5 85 98.8
MBI04_g36310_MAGBIO Magnolia biondii HOM05D004059 ORTHO05D004591 4.8e-36 156.8 515 30.7
BcaC04g20035 Brassica carinata HOM05D004059 ORTHO05D004591 8.1e-36 156.0 442 34.2
Glyma.13G105400 Glycine max HOM05D004059 ORTHO05D004591 2.4e-35 154.5 294 44.9
THA.LOC104811746 Tarenaya hassleriana HOM05D004059 ORTHO05D004591 4.5e-34 150.2 268 41.4
HanXRQChr09g0238101 Helianthus annuus HOM05D004059 ORTHO05D004591 1.7e-33 148.3 371 37.2
Actinidia38451 Actinidia chinensis HOM05D004059 ORTHO05D004591 5.5e-32 143.3 188 51.1
ClCG11G001730 Citrullus lanatus HOM05D004059 ORTHO05D004591 6.7e-30 136.3 472 28.2
Actinidia38450 Actinidia chinensis HOM05D004059 ORTHO05D004591 2.5e-29 134.4 250 40.0
CAN.G3656.1 Capsicum annuum HOM05D004059 ORTHO05D004591 4.8e-28 130.2 395 33.7
PGSC0003DMG400000335 Solanum tuberosum HOM05D000597 ORTHO05D004591 8.1e-28 129.4 280 38.9
HPP92_026782 Vanilla planifolia HOM05D004059 ORTHO05D004591 1.8e-27 128.3 474 28.9
Hma1.2p1_0672F.1_g201130 Hydrangea macrophylla HOM05D004059 ORTHO05D004591 2.4e-27 127.9 482 27.2
Peaxi162Scf00498g00054 Petunia axillaris HOM05D004059 ORTHO05D004591 2.4e-27 127.9 298 38.3
TAR383G1057 Trochodendron aralioides HOM05D004059 ORTHO05D004591 5.3e-27 126.7 446 29.8
Peaxi162Scf00498g00056 Petunia axillaris HOM05D004059 ORTHO05D004591 1.5e-26 125.2 390 33.6
BolC9t57704H Brassica oleracea HOM05D004059 ORTHO05D004591 2.0e-26 124.8 413 33.2
Sed0013460 Sechium edule HOM05D004059 ORTHO05D004591 1.0e-25 122.5 257 38.9
CAN.G1583.1 Capsicum annuum HOM05D000597 ORTHO05D004591 5.5e-24 116.7 195 46.2
Os06g0570900 Oryza sativa ssp. japonica HOM05D004059 ORTHO05D004591 3.0e-22 110.9 558 25.3
HPP92_023832 Vanilla planifolia HOM05D004059 ORTHO05D004591 7.4e-21 106.3 260 34.2
CDE04G0617 Ceratophyllum demersum HOM05D004059 ORTHO05D004591 8.2e-20 102.8 409 31.3
CDE06G2535 Ceratophyllum demersum HOM05D004059 ORTHO05D004591 1.4e-19 102.1 215 36.3
HPP92_023889 Vanilla planifolia HOM05D004059 ORTHO05D004591 1.4e-19 102.1 260 33.8
Zm00001eb240050 Zea mays HOM05D004059 ORTHO05D004591 1.4e-19 102.1 614 25.2
Dinv42328 Davidia involucrata HOM05D004059 ORTHO05D004591 2.0e-18 98.2 234 37.2
Peaxi162Scf00498g00537 Petunia axillaris HOM05D000597 ORTHO05D004591 5.0e-17 93.6 209 39.7
Dinv42329 Davidia involucrata HOM05D004059 ORTHO05D004591 8.4e-17 92.8 93 54.8
unitig_78.g29617 Utricularia gibba HOM05D004059 ORTHO05D004591 9.3e-16 89.4 358 29.3
Zm00001eb385110 Zea mays HOM05D004059 ORTHO05D004591 1.5e-13 82.0 536 25.2
SalBow1G5126 Salvia bowleyana HOM05D004059 ORTHO05D004591 1.9e-13 81.6 121 44.6
Nitab4.5_0002824g0150 Nicotiana tabacum HOM05D004059 ORTHO05D004591 1.3e-12 79.0 120 46.7
Os01g0196300 Oryza sativa ssp. japonica HOM05D004059 ORTHO05D004591 1.6e-12 78.6 82 53.7
Zm00001eb120960 Zea mays HOM05D004059 ORTHO05D004591 8.2e-12 76.3 204 31.9
SalBow1G7755 Salvia bowleyana HOM05D004059 ORTHO05D004591 2.4e-11 74.7 218 33.0
Zm00001eb337860 Zea mays HOM05D004059 ORTHO05D004591 3.4e-10 70.9 102 45.1
BolC9t57705H Brassica oleracea HOM05D004059 ORTHO05D004591 4.5e-10 70.5 94 38.3
Nitab4.5_0002824g0140 Nicotiana tabacum HOM05D004059 ORTHO05D004591 4.5e-10 70.5 136 41.9
Zm00001eb160210 Zea mays HOM05D004059 ORTHO05D004591 2.9e-09 67.8 187 32.6
Os01g0195801 Oryza sativa ssp. japonica HOM05D004059 ORTHO05D004591 3.8e-09 67.4 79 48.1
Sed0000136 Sechium edule HOM05D004059 ORTHO05D004591 3.8e-09 67.4 116 38.8
Peaxi162Scf00221g00512 Petunia axillaris HOM05D004059 ORTHO05D004591 2.5e-08 64.7 64 54.7
Os05g0199800 Oryza sativa ssp. japonica HOM05D004059 ORTHO05D004591 7.2e-08 63.2 147 34.7
Zm00001eb347270 Zea mays HOM05D004059 ORTHO05D004591 1.2e-07 62.4 91 38.5
Os01g0575200 Oryza sativa ssp. japonica HOM05D004059 ORTHO05D004591 2.7e-07 61.2 177 31.6
SEGI_09398 Sequoiadendron giganteum HOM05D010622 ORTHO05D011909 1.8e-06 58.5 138 34.1
Zm00001eb357120 Zea mays HOM05D004059 ORTHO05D004591 1.8e-06 58.5 143 32.2
Mapoly0031s0161 Marchantia polymorpha HOM05D001604 ORTHO05D001432 3.0e-06 57.8 97 39.2
Potri.005G208600 Populus trichocarpa HOM05D001604 ORTHO05D001432 5.1e-06 57.0 82 43.9
SEGI_18479 Sequoiadendron giganteum HOM05D001604 ORTHO05D001432 5.1e-06 57.0 106 39.6
Psat6g060480 Pisum sativum HOM05D001604 ORTHO05D001432 6.7e-06 56.6 81 46.9


User provided reference genes

Program Settings