Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G13395 Trifolium pratense HOM05D004053 ORTHO05D005065 5.0e-185 651.0 332 100.0
Psat6g168840 Pisum sativum HOM05D004053 ORTHO05D005065 2.0e-141 506.1 334 79.3
Ca_10403_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 5.4e-139 498.0 334 78.1
Medtr1g089980 Medicago truncatula HOM05D004053 ORTHO05D005065 8.1e-135 484.2 335 77.3
Glyma.02G149700 Glycine max HOM05D004053 ORTHO05D005065 4.3e-112 408.7 337 67.1
Glyma.10G024200 Glycine max HOM05D004053 ORTHO05D005065 5.3e-110 401.7 337 65.9
Lj5g0001920 Lotus japonicus HOM05D004053 ORTHO05D005065 1.0e-105 387.5 341 63.6
Lalb_Chr21g0306591 Lupinus albus HOM05D004053 ORTHO05D005065 5.7e-104 381.7 327 60.9
VMungo0720G1290 Vigna mungo HOM05D004053 ORTHO05D005065 3.7e-103 379.0 336 61.6
Phvul.007G169200 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 7.7e-101 371.3 336 62.8
Lalb_Chr06g0163121 Lupinus albus HOM05D004053 ORTHO05D005065 1.1e-99 367.5 328 61.0
Lj1g0006875 Lotus japonicus HOM05D004053 ORTHO05D005065 2.6e-96 356.3 349 57.3
Glyma.19G153300 Glycine max HOM05D004053 ORTHO05D005065 3.3e-96 355.9 340 59.1
Phvul.001G148300 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 1.1e-91 340.9 338 55.9
Glyma.03G150700 Glycine max HOM05D004053 ORTHO05D005065 5.5e-91 338.6 339 57.5
Ca_08561_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 7.2e-91 338.2 342 55.8
Ca_08595_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 7.2e-91 338.2 342 55.8
Medtr7g094470 Medicago truncatula HOM05D004053 ORTHO05D005065 3.9e-89 332.4 335 55.8
TPR.G32826 Trifolium pratense HOM05D004053 ORTHO05D005065 5.2e-89 332.0 338 55.9
arahy.Tifrunner.gnm1.ann1.V8R19R Arachis hypogaea HOM05D004053 ORTHO05D005065 1.1e-88 330.9 338 55.3
Psat3g065760 Pisum sativum HOM05D004053 ORTHO05D005065 4.4e-88 328.9 338 54.4
arahy.Tifrunner.gnm1.ann1.K8THJN Arachis hypogaea HOM05D004053 ORTHO05D005065 4.8e-87 325.5 345 54.5
Cfa006097 Carpinus fangiana HOM05D004053 ORTHO05D005065 3.1e-78 296.2 336 50.6
VMungo1383G0556 Vigna mungo HOM05D004053 ORTHO05D005065 3.1e-78 296.2 336 51.2
Haze_04757 Corylus avellana HOM05D004053 ORTHO05D005065 5.3e-78 295.4 338 50.6
Dinv11260 Davidia involucrata HOM05D004053 ORTHO05D005065 3.8e-76 289.3 347 47.8
Ciclev10020315m.g Citrus clementina HOM05D004053 ORTHO05D005065 2.1e-74 283.5 337 47.8
QL12p022856 Quercus lobata HOM05D004053 ORTHO05D005065 2.3e-73 280.0 339 49.0
Manes.01G210500 Manihot esculenta HOM05D004053 ORTHO05D005065 2.2e-71 273.5 334 48.2
arahy.Tifrunner.gnm1.ann1.U9BU7H Arachis hypogaea HOM05D004053 ORTHO05D005065 8.3e-71 271.6 324 50.6
CANSAT25G0924 Cannabis sativa HOM05D004053 ORTHO05D005065 1.6e-69 267.3 338 47.9
GSVIVG01011074001 Vitis vinifera HOM05D004053 ORTHO05D005065 1.7e-68 263.8 346 46.5
Atru.chr5.1352 Acer truncatum HOM05D004053 ORTHO05D005065 5.0e-68 262.3 339 46.6
Cpa.g.sc9.119 Carica papaya HOM05D004053 ORTHO05D005065 2.8e-66 256.5 349 45.8
CiPaw.07G095100 Carya illinoinensis HOM05D004053 ORTHO05D005065 5.2e-65 252.3 337 46.3
Hma1.2p1_0257F.1_g103830 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 6.8e-65 251.9 351 44.4
CSS0023044 Camellia sinensis var. sinensis HOM05D004053 ORTHO05D005065 1.8e-62 243.8 347 43.5
MD11G1290800 Malus domestica HOM05D004053 ORTHO05D005065 4.1e-62 242.7 338 46.2
Nn4g26160 Nelumbo nucifera HOM05D004053 ORTHO05D005065 1.6e-61 240.7 349 45.0
Potri.014G138200 Populus trichocarpa HOM05D004053 ORTHO05D005065 5.9e-61 238.8 337 42.4
Prupe.8G245900 Prunus persica HOM05D004053 ORTHO05D005065 5.9e-61 238.8 338 45.0
TAR362G1031 Trochodendron aralioides HOM05D004053 ORTHO05D005065 1.3e-60 237.7 283 47.7
Duzib138G0912 Durio zibethinus HOM05D004053 ORTHO05D005065 3.8e-60 236.1 340 43.5
Actinidia24316 Actinidia chinensis HOM05D004053 ORTHO05D005065 6.6e-60 235.3 335 41.5
Duzib133G0805 Durio zibethinus HOM05D004053 ORTHO05D005065 2.3e-57 226.9 339 42.8
Gohir.D11G124800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 2.6e-56 223.4 338 44.1
Potri.002G215800 Populus trichocarpa HOM05D004053 ORTHO05D005065 4.4e-56 222.6 334 40.4
vmacro02546 Vaccinium macrocarpon HOM05D004053 ORTHO05D005065 4.4e-56 222.6 346 39.9
Rhsim13G0022200 Rhododendron simsii HOM05D004053 ORTHO05D005065 5.8e-56 222.2 346 41.3
Gorai.007G133800 Gossypium raimondii HOM05D004053 ORTHO05D005065 7.5e-56 221.9 338 43.8
Gorai.008G005800 Gossypium raimondii HOM05D004053 ORTHO05D005065 2.9e-55 219.9 342 41.5
FAN24G1933 Fragaria x ananassa HOM05D004053 ORTHO05D005065 3.7e-55 219.5 339 44.0
FvH4_2g24050 Fragaria vesca HOM05D004053 ORTHO05D005065 6.4e-55 218.8 339 44.0
Thecc.01G284500 Theobroma cacao HOM05D004053 ORTHO05D005065 6.4e-55 218.8 340 42.4
Lj1C43T4 Lonicera japonica HOM05D004053 ORTHO05D005065 4.1e-54 216.1 349 39.3
FAN20G0349 Fragaria x ananassa HOM05D004053 ORTHO05D005065 5.4e-54 215.7 339 43.4
Gohir.D12G005800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 5.4e-54 215.7 342 40.9
FAN27G0975 Fragaria x ananassa HOM05D004053 ORTHO05D005065 2.7e-53 213.4 339 43.4
FAN15G3549 Fragaria x ananassa HOM05D004053 ORTHO05D005065 3.5e-53 213.0 339 43.1
RcHm_v2.0_Chr6g0291821 Rosa chinensis HOM05D004053 ORTHO05D005065 6.0e-53 212.2 339 42.5
Gohir.A12G006400 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.7e-52 210.7 342 40.6
Nn1g02136 Nelumbo nucifera HOM05D004053 ORTHO05D005065 3.9e-52 209.5 355 40.8
TWI14G1274 Tripterygium wilfordii HOM05D004053 ORTHO05D005065 1.1e-51 208.0 339 42.2
CiPaw.08G102900 Carya illinoinensis HOM05D004053 ORTHO05D005065 1.5e-51 207.6 246 49.6
MD03G1269800 Malus domestica HOM05D004053 ORTHO05D005065 1.5e-51 207.6 338 41.4
Gohir.A11G120100 Gossypium hirsutum HOM05D004053 ORTHO05D005065 3.3e-51 206.5 338 42.6
Duzib211G0472 Durio zibethinus HOM05D004053 ORTHO05D005065 5.6e-51 205.7 265 47.2
PSO832G4321 Papaver somniferum HOM05D004053 ORTHO05D005065 2.8e-50 203.4 350 38.0
PGR044G2575 Punica granatum HOM05D004053 ORTHO05D005065 3.6e-50 203.0 334 40.4
Eucgr.K03405 Eucalyptus grandis HOM05D004053 ORTHO05D005065 2.3e-49 200.3 331 38.7
MELO3C014420.2 Cucumis melo HOM05D004053 ORTHO05D005065 4.0e-49 199.5 340 40.9
Sabra14G0104300 Salix brachista HOM05D004053 ORTHO05D005065 2.6e-48 196.8 365 36.4
Nitab4.5_0008204g0020 Nicotiana tabacum HOM05D004053 ORTHO05D005065 9.8e-48 194.9 350 34.6
CsaV3_6G036930 Cucumis sativus L. HOM05D004053 ORTHO05D005065 1.3e-47 194.5 336 41.1
Migut.D00258 Erythranthe guttata HOM05D004053 ORTHO05D005065 8.3e-47 191.8 327 36.7
Aqoxy2G03230 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 1.9e-46 190.7 290 41.7
DCAR_005821 Daucus carota HOM05D004053 ORTHO05D005065 7.8e-45 185.3 286 38.5
Aqoxy5G00541 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 1.7e-44 184.1 343 35.3
MSTRG.21579 Avicennia marina HOM05D004053 ORTHO05D005065 1.1e-43 181.4 347 35.7
Nitab4.5_0001323g0010 Nicotiana tabacum HOM05D004053 ORTHO05D005065 1.5e-43 181.0 362 32.6
ClCG07G000110 Citrullus lanatus HOM05D004053 ORTHO05D005065 1.9e-43 180.6 340 37.6
Oeu011173.1 Olea europaea HOM05D004053 ORTHO05D005065 4.3e-43 179.5 294 38.1
Actinidia00729 Actinidia chinensis HOM05D004053 ORTHO05D005065 5.6e-43 179.1 228 44.3
THA.LOC104801216 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 5.6e-43 179.1 338 37.0
Peaxi162Scf00777g00211 Petunia axillaris HOM05D004053 ORTHO05D005065 4.7e-42 176.0 353 34.0
Solyc09g072990.3 Solanum lycopersicum HOM05D004053 ORTHO05D005065 8.1e-42 175.3 344 33.4
PGSC0003DMG400003799 Solanum tuberosum HOM05D004053 ORTHO05D005065 8.1e-42 175.3 347 32.9
ECA248G2902 Erigeron canadensis HOM05D004053 ORTHO05D005065 2.3e-41 173.7 344 37.8
Lj2A1179G44 Lonicera japonica HOM05D004053 ORTHO05D005065 6.8e-41 172.2 267 39.0
DCAR_012450 Daucus carota HOM05D004053 ORTHO05D005065 2.0e-40 170.6 344 33.7
THA.LOC104815946 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 7.5e-40 168.7 269 40.1
Sopen09g028800 Solanum pennellii HOM05D004053 ORTHO05D005065 2.2e-39 167.2 347 32.6
Sp6g02950 Schrenkiella parvula HOM05D004053 ORTHO05D005065 1.4e-38 164.5 340 35.6
Cc01_g19820 Coffea canephora HOM05D004053 ORTHO05D005065 3.2e-38 163.3 303 37.0
HanXRQChr01g0002441 Helianthus annuus HOM05D004053 ORTHO05D005065 5.4e-38 162.5 338 35.5
MBI17_g34956_MAGBIO Magnolia biondii HOM05D004053 ORTHO05D005065 3.5e-37 159.8 300 38.3
Sed0017907 Sechium edule HOM05D004053 ORTHO05D005065 3.5e-37 159.8 390 32.6
HanXRQChr02g0046661 Helianthus annuus HOM05D004053 ORTHO05D005065 4.6e-37 159.5 337 34.4
PSO675G9209 Papaver somniferum HOM05D004053 ORTHO05D005065 7.8e-37 158.7 359 34.0
AT4G02920 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 1.0e-36 158.3 339 34.8
C03p37430 Brassica napus HOM05D004053 ORTHO05D005065 2.5e-35 153.7 341 34.0
BraA03t12252Z Brassica rapa HOM05D004053 ORTHO05D005065 3.3e-35 153.3 337 33.5
Lsat_1_v5_gn_5_187500 Lactuca sativa HOM05D004053 ORTHO05D005065 3.3e-35 153.3 354 35.3
AL1G12850 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 4.3e-35 152.9 328 34.8
BolC3t16035H Brassica oleracea HOM05D004053 ORTHO05D005065 7.3e-35 152.1 341 33.7
Carub.0006s3417 Capsella rubella HOM05D004053 ORTHO05D005065 7.3e-35 152.1 338 33.1
Thhalv10028686m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 1.2e-34 151.4 340 33.2
PSO541G4889 Papaver somniferum HOM05D004053 ORTHO05D005065 1.2e-34 151.4 360 34.2
Sc05g0005080 Simmondsia chinensis HOM05D004053 ORTHO05D005065 1.2e-34 151.4 344 32.8
CARHR251290 Cardamine hirsuta HOM05D004053 ORTHO05D005065 1.6e-34 151.0 340 33.2
A03p30730 Brassica napus HOM05D004053 ORTHO05D005065 2.1e-34 150.6 338 33.4
Psat1g163200 Pisum sativum HOM05D000871 ORTHO05D008698 1.1e-33 148.3 163 49.7
Carub.0001s0245 Capsella rubella HOM05D004053 ORTHO05D005065 2.4e-33 147.1 336 36.0
arahy.Tifrunner.gnm1.ann1.F0KDF8 Arachis hypogaea HOM05D004053 ORTHO05D005065 3.1e-33 146.7 177 52.0
EL10Ac7g17207 Beta vulgaris HOM05D004053 ORTHO05D005065 9.9e-32 141.7 349 33.2
Aa31LG5G2500 Aethionema arabicum HOM05D004053 ORTHO05D005065 2.2e-31 140.6 341 29.6
Thhalv10007898m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 1.4e-30 137.9 270 35.9
BcaB01g02487 Brassica carinata HOM05D004053 ORTHO05D005065 1.9e-30 137.5 341 33.1
AL6G50010 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 2.4e-30 137.1 338 31.4
AT1G03340 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 5.4e-30 136.0 270 36.3
SalBow6G4695 Salvia bowleyana HOM05D004053 ORTHO05D005065 1.2e-29 134.8 314 30.9
CDE11G0853 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 2.7e-29 133.7 189 42.3
Sp1g02330 Schrenkiella parvula HOM05D004053 ORTHO05D005065 2.3e-28 130.6 335 33.4
VMungo0540G1158 Vigna mungo HOM05D004053 ORTHO05D005065 3.9e-28 129.8 118 58.5
SGA_v2.0_scaffold1G00444 Striga asiatica HOM05D004053 ORTHO05D005065 6.6e-28 129.0 347 30.8
CDE05G2296 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 1.5e-27 127.9 189 43.9
Zm00001eb417790 Zea mays HOM05D004053 ORTHO05D005065 6.9e-25 119.0 270 32.6
ATR0665G655 Amborella trichopoda HOM05D004053 ORTHO05D005065 5.4e-22 109.4 360 29.2
Psat4g131480 Pisum sativum HOM05D004053 ORTHO05D005065 1.2e-21 108.2 87 64.4
Oeu041712.1 Olea europaea HOM05D004053 ORTHO05D005065 6.0e-21 105.9 132 48.5
arahy.Tifrunner.gnm1.ann1.HAWP0L Arachis hypogaea HOM05D019977 ORTHO05D005065 1.0e-20 105.1 176 39.8
BraA10t42462Z Brassica rapa HOM05D004053 ORTHO05D005065 1.1e-19 101.7 276 32.6
Os05g0143300 Oryza sativa ssp. japonica HOM05D004053 ORTHO05D005065 9.6e-19 98.6 297 29.6
arahy.Tifrunner.gnm1.ann1.59R5K9 Arachis hypogaea HOM05D004053 ORTHO05D005065 2.4e-17 94.0 64 68.8
AUR62033710 Chenopodium quinoa HOM05D004053 ORTHO05D005065 9.9e-16 88.6 159 35.8
unitig_8.g3318 Utricularia gibba HOM05D004053 ORTHO05D005065 1.7e-15 87.8 307 27.0
AUR62036816 Chenopodium quinoa HOM05D004053 ORTHO05D005065 2.2e-15 87.4 175 34.9
BcaC05g24539 Brassica carinata HOM05D004053 ORTHO05D005065 3.2e-14 83.6 119 45.4
BcaC01g06723 Brassica carinata HOM05D004053 ORTHO05D005065 1.2e-13 81.6 84 56.0
arahy.Tifrunner.gnm1.ann1.Z8WERX Arachis hypogaea HOM05D004053 ORTHO05D005065 2.1e-13 80.9 59 67.8
arahy.Tifrunner.gnm1.ann1.QFAY72 Arachis hypogaea HOM05D004053 ORTHO05D005065 4.6e-13 79.7 62 66.1
A10p01890 Brassica napus HOM05D004053 ORTHO05D005065 1.8e-12 77.8 175 38.3
BcaC03g16190 Brassica carinata HOM05D004053 ORTHO05D005065 2.0e-08 64.3 85 43.5
A02p25050 Brassica napus HOM05D004053 ORTHO05D005065 2.0e-08 64.3 85 43.5
C02p39720 Brassica napus HOM05D004053 ORTHO05D005065 2.0e-08 64.3 85 43.5
BolC2t09985H Brassica oleracea HOM05D004053 ORTHO05D005065 2.0e-08 64.3 85 43.5
BraA02t07493Z Brassica rapa HOM05D004053 ORTHO05D005065 2.0e-08 64.3 85 43.5
unitig_22.g6690 Utricularia gibba HOM05D004053 ORTHO05D005065 2.6e-08 63.9 261 27.6
Hma1.2p1_0377F.1_g139390 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 1.3e-07 61.6 52 53.8
arahy.Tifrunner.gnm1.ann1.LMB138 Arachis hypogaea HOM05D004053 ORTHO05D005065 1.7e-07 61.2 44 75.0


User provided reference genes

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