Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G13376 Trifolium pratense HOM05D006577 ORTHO05D008428 5.7e-50 200.7 106 100.0
TPR.G29075 Trifolium pratense HOM05D006577 ORTHO05D008428 2.8e-20 102.1 67 82.1
Psat1g131640 Pisum sativum HOM05D006577 ORTHO05D008428 2.3e-19 99.0 67 79.1
Medtr2g040410 Medicago truncatula HOM05D006577 ORTHO05D008428 6.8e-19 97.4 67 77.6
Ca_13135_v3 Cicer arietinum L. HOM05D006577 ORTHO05D008428 1.5e-18 96.3 67 76.1
Lj2g0006155 Lotus japonicus HOM05D006577 ORTHO05D008428 2.6e-18 95.5 67 76.1
COL.COLO4_11282 Corchorus olitorius HOM05D006577 ORTHO05D008428 1.7e-17 92.8 67 71.6
Potri.004G236300 Populus trichocarpa HOM05D006577 ORTHO05D008428 1.7e-17 92.8 67 70.1
Sabra01G0180600 Salix brachista HOM05D006577 ORTHO05D008428 2.9e-17 92.0 67 70.1
CsaV3_4G027910 Cucumis sativus L. HOM05D006577 ORTHO05D008428 3.7e-17 91.7 67 70.1
arahy.Tifrunner.gnm1.ann1.0U4NMV Arachis hypogaea HOM05D006577 ORTHO05D008428 4.9e-17 91.3 67 71.6
arahy.Tifrunner.gnm1.ann1.Y0J304 Arachis hypogaea HOM05D006577 ORTHO05D008428 4.9e-17 91.3 67 71.6
Cpa.g.sc90.36 Carica papaya HOM05D006577 ORTHO05D008428 4.9e-17 91.3 67 70.1
Nitab4.5_0007095g0010 Nicotiana tabacum HOM05D006577 ORTHO05D008428 4.9e-17 91.3 67 70.1
DCAR_030906 Daucus carota HOM05D006577 ORTHO05D008428 6.4e-17 90.9 67 70.1
Migut.E01373 Erythranthe guttata HOM05D006577 ORTHO05D008428 6.4e-17 90.9 67 71.6
Glyma.01G154300 Glycine max HOM05D006577 ORTHO05D008428 6.4e-17 90.9 67 70.1
Glyma.11G090300 Glycine max HOM05D006577 ORTHO05D008428 6.4e-17 90.9 67 70.1
CAN.G1026.7 Capsicum annuum HOM05D006577 ORTHO05D008428 8.3e-17 90.5 67 70.1
Lalb_Chr16g0380351 Lupinus albus HOM05D006577 ORTHO05D008428 8.3e-17 90.5 67 70.1
Peaxi162Scf00193g00730 Petunia axillaris HOM05D006577 ORTHO05D008428 8.3e-17 90.5 67 68.7
QL12p004173 Quercus lobata HOM05D006577 ORTHO05D008428 8.3e-17 90.5 67 70.1
Solyc08g075420.4 Solanum lycopersicum HOM05D006577 ORTHO05D008428 8.3e-17 90.5 67 70.1
Sopen08g024050 Solanum pennellii HOM05D006577 ORTHO05D008428 8.3e-17 90.5 67 70.1
CiPaw.11G075200 Carya illinoinensis HOM05D006577 ORTHO05D008428 1.1e-16 90.1 67 68.7
ClCG11G016060 Citrullus lanatus HOM05D006577 ORTHO05D008428 1.4e-16 89.7 67 68.7
MELO3C010522.2 Cucumis melo HOM05D006577 ORTHO05D008428 1.4e-16 89.7 67 68.7
Manes.17G000100 Manihot esculenta HOM05D006577 ORTHO05D008428 1.4e-16 89.7 67 67.2
Oeu046783.1 Olea europaea HOM05D006577 ORTHO05D008428 1.4e-16 89.7 67 67.2
THA.LOC104806196 Tarenaya hassleriana HOM05D006577 ORTHO05D008428 1.4e-16 89.7 62 71.0
TWI73G0063 Tripterygium wilfordii HOM05D006577 ORTHO05D008428 1.4e-16 89.7 67 68.7
Actinidia32789 Actinidia chinensis HOM05D006577 ORTHO05D008428 1.9e-16 89.4 67 68.7
HanXRQChr07g0198411 Helianthus annuus HOM05D006577 ORTHO05D008428 2.4e-16 89.0 67 68.7
HPP92_002488 Vanilla planifolia HOM05D006577 ORTHO05D008428 2.4e-16 89.0 67 67.2
VMungo1215G3406 Vigna mungo HOM05D006577 ORTHO05D008428 2.4e-16 89.0 67 68.7
Cc08_g05650 Coffea canephora HOM05D006577 ORTHO05D008428 3.2e-16 88.6 67 68.7
Gohir.A08G149500 Gossypium hirsutum HOM05D006577 ORTHO05D008428 3.2e-16 88.6 67 68.7
Gohir.D08G170500 Gossypium hirsutum HOM05D006577 ORTHO05D008428 3.2e-16 88.6 67 68.7
Phvul.002G121300 Phaseolus vulgaris HOM05D006577 ORTHO05D008428 3.2e-16 88.6 67 68.7
GSVIVG01036870001 Vitis vinifera HOM05D006577 ORTHO05D008428 3.2e-16 88.6 67 67.2
Oeu015543.2 Olea europaea HOM05D006577 ORTHO05D008428 4.1e-16 88.2 67 68.7
Ciclev10011516m.g Citrus clementina HOM05D006577 ORTHO05D008428 5.4e-16 87.8 67 67.2
Gorai.004G178000 Gossypium raimondii HOM05D006577 ORTHO05D008428 7.1e-16 87.4 67 67.2
unitig_37.g12910 Utricularia gibba HOM05D006577 ORTHO05D008428 7.1e-16 87.4 67 67.2
MSTRG.1757 Avicennia marina HOM05D006577 ORTHO05D008428 9.2e-16 87.0 67 68.7
Nn7g37388 Nelumbo nucifera HOM05D006577 ORTHO05D008428 9.2e-16 87.0 67 68.7
PGR042G0863 Punica granatum HOM05D006577 ORTHO05D008428 1.2e-15 86.7 67 65.7
Thecc.03G318900 Theobroma cacao HOM05D006577 ORTHO05D008428 1.2e-15 86.7 67 67.2
Atru.chr8.2629 Acer truncatum HOM05D006577 ORTHO05D008428 1.6e-15 86.3 67 65.7
TAR629G1131 Trochodendron aralioides HOM05D006577 ORTHO05D008428 1.6e-15 86.3 67 67.2
vmacro00091 Vaccinium macrocarpon HOM05D006577 ORTHO05D008428 1.6e-15 86.3 67 65.7
Aqoxy7G00896 Aquilegia oxysepala HOM05D006577 ORTHO05D008428 2.1e-15 85.9 67 67.2
Eucgr.D02560 Eucalyptus grandis HOM05D006577 ORTHO05D008428 3.5e-15 85.1 67 64.2
Rhsim11G0036700 Rhododendron simsii HOM05D006577 ORTHO05D008428 3.5e-15 85.1 67 65.7
AUR62030109 Chenopodium quinoa HOM05D006577 ORTHO05D008428 4.6e-15 84.7 67 62.7
Dinv41806 Davidia involucrata HOM05D006577 ORTHO05D008428 4.6e-15 84.7 67 64.2
Lsat_1_v5_gn_6_17281 Lactuca sativa HOM05D006577 ORTHO05D008428 4.6e-15 84.7 67 65.7
Lj3A8G25 Lonicera japonica HOM05D006577 ORTHO05D008428 6.0e-15 84.3 67 64.2
MD08G1001400 Malus domestica HOM05D006577 ORTHO05D008428 6.0e-15 84.3 67 65.7
Hund17694 Selenicereus undatus HOM05D006577 ORTHO05D008428 6.0e-15 84.3 67 64.2
CSS0014058 Camellia sinensis var. sinensis HOM05D006577 ORTHO05D008428 7.8e-15 84.0 67 64.2
CDE12G0431 Ceratophyllum demersum HOM05D006577 ORTHO05D008428 7.8e-15 84.0 67 64.2
EL10Ac8g19602 Beta vulgaris HOM05D006577 ORTHO05D008428 1.0e-14 83.6 67 62.7
Prupe.1G353400 Prunus persica HOM05D006577 ORTHO05D008428 1.0e-14 83.6 67 64.2
SEGI_36653 Sequoiadendron giganteum HOM05D006577 ORTHO05D008428 1.0e-14 83.6 67 62.7
Aa31LG6G1900 Aethionema arabicum HOM05D006577 ORTHO05D008428 1.3e-14 83.2 67 61.2
AL7G34890 Arabidopsis lyrata HOM05D006577 ORTHO05D008428 1.3e-14 83.2 67 62.7
AT4G19190 Arabidopsis thaliana HOM05D006577 ORTHO05D008428 1.3e-14 83.2 67 62.7
Carub.0007s2195 Capsella rubella HOM05D006577 ORTHO05D008428 1.3e-14 83.2 67 62.7
CARHR226070 Cardamine hirsuta HOM05D006577 ORTHO05D008428 1.3e-14 83.2 67 62.7
SMO172G0042 Selaginella moellendorffii HOM05D006577 ORTHO05D008428 1.3e-14 83.2 67 62.7
ATR0568G043 Amborella trichopoda HOM05D006577 ORTHO05D008428 1.7e-14 82.8 67 65.7
CANSAT35G0698 Cannabis sativa HOM05D006577 ORTHO05D008428 1.7e-14 82.8 67 62.7
Mapoly0190s0006 Marchantia polymorpha HOM05D006577 ORTHO05D008428 1.7e-14 82.8 67 64.2
Ah.09g232390 Amaranthus hybridus HOM05D006577 ORTHO05D008428 2.3e-14 82.4 67 61.2
CDE01G0285 Ceratophyllum demersum HOM05D006577 ORTHO05D008428 2.3e-14 82.4 67 62.7
ECA233G0973 Erigeron canadensis HOM05D006577 ORTHO05D008428 2.3e-14 82.4 67 64.2
BcaC09g51429 Brassica carinata HOM05D006577 ORTHO05D008428 3.9e-14 81.6 67 61.2
BcaC09g51430 Brassica carinata HOM05D006577 ORTHO05D008428 3.9e-14 81.6 67 61.2
A01p11160 Brassica napus HOM05D006577 ORTHO05D008428 3.9e-14 81.6 67 61.2
C01p13200 Brassica napus HOM05D006577 ORTHO05D008428 3.9e-14 81.6 67 61.2
BolC1t01294H Brassica oleracea HOM05D006577 ORTHO05D008428 3.9e-14 81.6 67 61.2
BraA01t01062Z Brassica rapa HOM05D006577 ORTHO05D008428 3.9e-14 81.6 67 61.2
Thhalv10024821m.g Eutrema salsugineum HOM05D006577 ORTHO05D008428 3.9e-14 81.6 67 61.2
Sp7g17900 Schrenkiella parvula HOM05D006577 ORTHO05D008428 3.9e-14 81.6 67 61.2
SGA_v2.0_scaffold144G35886 Striga asiatica HOM05D006577 ORTHO05D008428 5.1e-14 81.3 60 70.0
FvH4_2g37380 Fragaria vesca HOM05D006577 ORTHO05D008428 6.6e-14 80.9 67 62.7
Pp3c3_31660 Physcomitrium patens HOM05D006577 ORTHO05D008428 1.5e-13 79.7 66 62.1
Cfa012291 Carpinus fangiana HOM05D000435 ORTHO05D000430 2.5e-13 79.0 67 64.2
Haze_08434 Corylus avellana HOM05D006577 ORTHO05D008428 2.5e-13 79.0 67 64.2
PSO502G0007 Papaver somniferum HOM05D006577 ORTHO05D008428 2.1e-12 75.9 67 58.2
PSO675G5955 Papaver somniferum HOM05D006577 ORTHO05D008428 2.1e-12 75.9 67 58.2
Os06g0708900 Oryza sativa ssp. japonica HOM05D006577 ORTHO05D008428 3.6e-12 75.1 59 66.1
Zm00001eb395460 Zea mays HOM05D006577 ORTHO05D008428 1.4e-11 73.2 60 61.7
FAN20G0322 Fragaria x ananassa HOM05D006577 ORTHO05D008428 2.3e-11 72.4 67 59.7
FAN21G2299 Fragaria x ananassa HOM05D006577 ORTHO05D008428 3.1e-11 72.0 67 59.7
FAN27G1697 Fragaria x ananassa HOM05D006577 ORTHO05D008428 3.1e-11 72.0 67 59.7
RcHm_v2.0_Chr6g0304321 Rosa chinensis HOM05D006577 ORTHO05D008428 4.0e-11 71.6 67 59.7
Zm00001eb339160 Zea mays HOM05D006577 ORTHO05D008428 6.8e-11 70.9 59 62.7
CBR_g50314 Chara braunii HOM05D006577 ORTHO05D008428 2.9e-09 65.5 57 61.4
VMungo0251G3731 Vigna mungo HOM05D006577 ORTHO05D008428 1.9e-08 62.8 61 55.7


User provided reference genes

Program Settings