Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G13348 Trifolium pratense HOM05D001830 ORTHO05D411974 4.9e-55 217.6 114 100.0
CANSAT56G0012 Cannabis sativa HOM05D001830 ORTHO05D001855 2.4e-06 55.8 33 93.9
Ca_10745_v3 Cicer arietinum L. HOM05D001830 ORTHO05D001855 2.4e-06 55.8 33 93.9
Ca_14548_v3 Cicer arietinum L. HOM05D001830 ORTHO05D001855 2.4e-06 55.8 33 93.9
Ca_21730_v3 Cicer arietinum L. HOM05D001830 ORTHO05D001855 2.4e-06 55.8 33 93.9
ClCG01G004450 Citrullus lanatus HOM05D001830 ORTHO05D001855 2.4e-06 55.8 33 93.9
DCAR_006928 Daucus carota HOM05D001830 ORTHO05D001855 2.4e-06 55.8 33 93.9
DCAR_025189 Daucus carota HOM05D001830 ORTHO05D001855 2.4e-06 55.8 33 93.9
Glyma.10G233900 Glycine max HOM05D001830 ORTHO05D001855 2.4e-06 55.8 33 93.9
Glyma.19G047300 Glycine max HOM05D001830 ORTHO05D001855 2.4e-06 55.8 33 93.9
Manes.06G149300 Manihot esculenta HOM05D001830 ORTHO05D001855 2.4e-06 55.8 33 93.9
Manes.14G025000 Manihot esculenta HOM05D001830 ORTHO05D001855 2.4e-06 55.8 33 93.9
Medtr6g053730 Medicago truncatula HOM05D001830 ORTHO05D001855 2.4e-06 55.8 33 93.9
Nitab4.5_0005277g0090 Nicotiana tabacum HOM05D001830 ORTHO05D001855 2.4e-06 55.8 33 93.9
Phvul.004G065100 Phaseolus vulgaris HOM05D001830 ORTHO05D001855 2.4e-06 55.8 33 93.9
Phvul.007G072100 Phaseolus vulgaris HOM05D001830 ORTHO05D001855 2.4e-06 55.8 33 93.9
Potri.004G057000 Populus trichocarpa HOM05D001830 ORTHO05D001855 2.4e-06 55.8 33 93.9
Sabra04G0036900 Salix brachista HOM05D001830 ORTHO05D001855 2.4e-06 55.8 33 93.9
Sabra11G0047600 Salix brachista HOM05D001830 ORTHO05D001855 2.4e-06 55.8 33 93.9
TPR.G34379 Trifolium pratense HOM05D001830 ORTHO05D001855 2.4e-06 55.8 33 93.9
TWI14G1139 Tripterygium wilfordii HOM05D001830 ORTHO05D001855 2.4e-06 55.8 33 93.9
TWI15G0820 Tripterygium wilfordii HOM05D001830 ORTHO05D001855 2.4e-06 55.8 33 93.9
TWI23G1132 Tripterygium wilfordii HOM05D001830 ORTHO05D001855 2.4e-06 55.8 33 93.9
TWI81G0384 Tripterygium wilfordii HOM05D001830 ORTHO05D001855 2.4e-06 55.8 33 93.9
VMungo0464G1311 Vigna mungo HOM05D001830 ORTHO05D001855 2.4e-06 55.8 33 93.9
VMungo0720G0017 Vigna mungo HOM05D001830 ORTHO05D001855 2.4e-06 55.8 33 93.9
ECA234G0334 Erigeron canadensis HOM05D001830 ORTHO05D001855 3.2e-06 55.5 33 90.9
Actinidia03127 Actinidia chinensis HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
Actinidia20912 Actinidia chinensis HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
Actinidia31827 Actinidia chinensis HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
Ah.04g160070 Amaranthus hybridus HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
Ah.13g068880 Amaranthus hybridus HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
Aqoxy2G01732 Aquilegia oxysepala HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
Aqoxy3G01248 Aquilegia oxysepala HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
Aqoxy4G02944 Aquilegia oxysepala HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
arahy.Tifrunner.gnm1.ann1.GWDR8P Arachis hypogaea HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
CSS0001176 Camellia sinensis var. sinensis HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
CSS0026645 Camellia sinensis var. sinensis HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
CSS0040783 Camellia sinensis var. sinensis HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
CSS0047550 Camellia sinensis var. sinensis HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
CANSAT25G2423 Cannabis sativa HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
Cfa010640 Carpinus fangiana HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
Cc02_g02770 Coffea canephora HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
Cc02_g37930 Coffea canephora HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
Haze_00007 Corylus avellana HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
Haze_03589 Corylus avellana HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
Dinv12791 Davidia involucrata HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
Dinv32474 Davidia involucrata HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
Dinv43810 Davidia involucrata HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
Duzib133G0602 Durio zibethinus HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
Eucgr.K00276 Eucalyptus grandis HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
FvH4_5g14631 Fragaria vesca HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
FvH4_5g26401 Fragaria vesca HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
FvH4_6g13991 Fragaria vesca HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
FvH4_7g29761 Fragaria vesca HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
Lj2g0017377 Lotus japonicus HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
Lalb_Chr19g0130761 Lupinus albus HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
MBI17_g45207_MAGBIO Magnolia biondii HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
MD04G1126700 Malus domestica HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
MD07G1178200 Malus domestica HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
MD12G1078300 Malus domestica HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
PSO151G0144 Papaver somniferum HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
PSO339G1999 Papaver somniferum HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
PSO339G4502 Papaver somniferum HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
PSO384G3889 Papaver somniferum HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
PSO478G3659 Papaver somniferum HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
PSO782G3953 Papaver somniferum HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
Potri.011G066000 Populus trichocarpa HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
Potri.012G142600 Populus trichocarpa HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
Potri.015G145800 Populus trichocarpa HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
Prupe.6G253400 Prunus persica HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
Rhsim03G0187500 Rhododendron simsii HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
Rhsim07G0015900 Rhododendron simsii HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
Rhsim09G0198700 Rhododendron simsii HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
RcHm_v2.0_Chr1g0377751 Rosa chinensis HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
RcHm_v2.0_Chr3g0466821 Rosa chinensis HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
Sabra12G0107300 Salix brachista HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
Sabra15G0155200 Salix brachista HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
THA.LOC104805489 Tarenaya hassleriana HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
THA.LOC104816279 Tarenaya hassleriana HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
THA.LOC104823417 Tarenaya hassleriana HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
THA.LOC104823418 Tarenaya hassleriana HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
TAR369G0378 Trochodendron aralioides HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
TAR374G0697 Trochodendron aralioides HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
TAR375G0234 Trochodendron aralioides HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
TAR623G0842 Trochodendron aralioides HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
TAR625G1027 Trochodendron aralioides HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
vmacro06661 Vaccinium macrocarpon HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
vmacro09830 Vaccinium macrocarpon HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
vmacro13281 Vaccinium macrocarpon HOM05D001830 ORTHO05D001855 5.5e-06 54.7 33 90.9
Atru.chr1.428 Acer truncatum HOM05D001830 ORTHO05D001855 7.1e-06 54.3 32 93.8
arahy.Tifrunner.gnm1.ann1.QQ6LTJ Arachis hypogaea HOM05D001830 ORTHO05D001855 7.1e-06 54.3 32 93.8
ClCG00G002830 Citrullus lanatus HOM05D001830 ORTHO05D001855 7.1e-06 54.3 32 93.8
COL.COLO4_28053 Corchorus olitorius HOM05D001830 ORTHO05D001855 7.1e-06 54.3 34 88.2
DCAR_015971 Daucus carota HOM05D001830 ORTHO05D001855 7.1e-06 54.3 32 93.8
Duzib068G0055 Durio zibethinus HOM05D001830 ORTHO05D001855 7.1e-06 54.3 34 88.2
Duzib084G0840 Durio zibethinus HOM05D001830 ORTHO05D001855 7.1e-06 54.3 34 88.2
Duzib205G1261 Durio zibethinus HOM05D001830 ORTHO05D001855 7.1e-06 54.3 34 88.2
ECA232G1446 Erigeron canadensis HOM05D001830 ORTHO05D001855 7.1e-06 54.3 33 90.9
Gohir.A08G098900 Gossypium hirsutum HOM05D001830 ORTHO05D001855 7.1e-06 54.3 34 88.2
Gohir.A09G041400 Gossypium hirsutum HOM05D001830 ORTHO05D001855 7.1e-06 54.3 34 88.2
Gohir.A12G256600 Gossypium hirsutum HOM05D001830 ORTHO05D001855 7.1e-06 54.3 34 88.2
Gohir.D08G110400 Gossypium hirsutum HOM05D001830 ORTHO05D001855 7.1e-06 54.3 34 88.2
Gohir.D09G042300 Gossypium hirsutum HOM05D001830 ORTHO05D001855 7.1e-06 54.3 34 88.2
Gohir.D12G257900 Gossypium hirsutum HOM05D001830 ORTHO05D001855 7.1e-06 54.3 34 88.2
Gorai.004G118000 Gossypium raimondii HOM05D001830 ORTHO05D001855 7.1e-06 54.3 34 88.2
Gorai.006G048500 Gossypium raimondii HOM05D001830 ORTHO05D001855 7.1e-06 54.3 34 88.2
Gorai.008G276200 Gossypium raimondii HOM05D001830 ORTHO05D001855 7.1e-06 54.3 34 88.2
Medtr1g100960 Medicago truncatula HOM05D001830 ORTHO05D001855 7.1e-06 54.3 32 93.8
Nitab4.5_0008002g0020 Nicotiana tabacum HOM05D001830 ORTHO05D001855 7.1e-06 54.3 33 90.9
Psat6g197360 Pisum sativum HOM05D001830 ORTHO05D001855 7.1e-06 54.3 32 93.8
Sc09g0003460 Simmondsia chinensis HOM05D001830 ORTHO05D001855 7.1e-06 54.3 32 93.8
Sc19g0001430 Simmondsia chinensis HOM05D001830 ORTHO05D001855 7.1e-06 54.3 32 93.8
Thecc.03G179300 Theobroma cacao HOM05D001830 ORTHO05D001855 7.1e-06 54.3 34 88.2
EL10Ac3g05609 Beta vulgaris HOM05D001830 ORTHO05D001855 9.3e-06 53.9 33 87.9
CAN.G1175.5 Capsicum annuum HOM05D001830 ORTHO05D001855 9.3e-06 53.9 33 90.9
CAN.G527.2 Capsicum annuum HOM05D001830 ORTHO05D001855 9.3e-06 53.9 33 90.9
AUR62000935 Chenopodium quinoa HOM05D001830 ORTHO05D001855 9.3e-06 53.9 33 87.9
AUR62005033 Chenopodium quinoa HOM05D001830 ORTHO05D001855 9.3e-06 53.9 33 87.9
AUR62015959 Chenopodium quinoa HOM05D001830 ORTHO05D001855 9.3e-06 53.9 33 87.9
AUR62021165 Chenopodium quinoa HOM05D001830 ORTHO05D001855 9.3e-06 53.9 33 87.9
MELO3C005472.2 Cucumis melo HOM05D001830 ORTHO05D001855 9.3e-06 53.9 33 90.9
MELO3C006922.2 Cucumis melo HOM05D001830 ORTHO05D001855 9.3e-06 53.9 33 90.9
CsaV3_3G017240 Cucumis sativus L. HOM05D001830 ORTHO05D001855 9.3e-06 53.9 33 90.9
CsaV3_5G004670 Cucumis sativus L. HOM05D001830 ORTHO05D001855 9.3e-06 53.9 33 90.9
Glyma.20G160400 Glycine max HOM05D001830 ORTHO05D001855 9.3e-06 53.9 33 90.9
Glyma.20G160500 Glycine max HOM05D001830 ORTHO05D001855 9.3e-06 53.9 33 90.9
HanXRQChr04g0099231 Helianthus annuus HOM05D001830 ORTHO05D001855 9.3e-06 53.9 33 90.9
HanXRQChr15g0493991 Helianthus annuus HOM05D001830 ORTHO05D001855 9.3e-06 53.9 33 90.9
HanXRQChr16g0522741 Helianthus annuus HOM05D001830 ORTHO05D001855 9.3e-06 53.9 33 90.9
HanXRQChr17g0561621 Helianthus annuus HOM05D001830 ORTHO05D001855 9.3e-06 53.9 33 90.9
Manes.01G257600 Manihot esculenta HOM05D001830 ORTHO05D001855 9.3e-06 53.9 33 90.9
Manes.05G035000 Manihot esculenta HOM05D001830 ORTHO05D001855 9.3e-06 53.9 33 90.9
Nitab4.5_0000080g0120 Nicotiana tabacum HOM05D001830 ORTHO05D001855 9.3e-06 53.9 33 90.9
Nitab4.5_0000084g0060 Nicotiana tabacum HOM05D001830 ORTHO05D001855 9.3e-06 53.9 33 90.9
Nitab4.5_0001951g0050 Nicotiana tabacum HOM05D001830 ORTHO05D001855 9.3e-06 53.9 33 90.9
Nitab4.5_0004439g0110 Nicotiana tabacum HOM05D001830 ORTHO05D001855 9.3e-06 53.9 33 90.9
Peaxi162Scf00020g00211 Petunia axillaris HOM05D001830 ORTHO05D001855 9.3e-06 53.9 33 90.9
Peaxi162Scf00444g00525 Petunia axillaris HOM05D001830 ORTHO05D001855 9.3e-06 53.9 33 90.9
Peaxi162Scf00848g00113 Petunia axillaris HOM05D001830 ORTHO05D001855 9.3e-06 53.9 33 90.9
Sed0014023 Sechium edule HOM05D001830 ORTHO05D001855 9.3e-06 53.9 33 90.9
Sed0015709 Sechium edule HOM05D001830 ORTHO05D001855 9.3e-06 53.9 33 90.9
Sed0016277 Sechium edule HOM05D001830 ORTHO05D001855 9.3e-06 53.9 33 90.9
Solyc01g094560.4 Solanum lycopersicum HOM05D001830 ORTHO05D001855 9.3e-06 53.9 33 90.9
Solyc03g025520.4 Solanum lycopersicum HOM05D001830 ORTHO05D001855 9.3e-06 53.9 33 90.9
Sopen01g038370 Solanum pennellii HOM05D001830 ORTHO05D001855 9.3e-06 53.9 33 90.9
Sopen03g004360 Solanum pennellii HOM05D001830 ORTHO05D001855 9.3e-06 53.9 33 90.9
PGSC0003DMG400015795 Solanum tuberosum HOM05D001830 ORTHO05D001855 9.3e-06 53.9 33 90.9


User provided reference genes

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