Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G13336 Trifolium pratense HOM05D007481 ORTHO05D009444 5.5e-147 524.2 258 100.0
Medtr4g012440 Medicago truncatula HOM05D007481 ORTHO05D009444 1.0e-132 476.9 257 89.5
Psat7g244960 Pisum sativum HOM05D007481 ORTHO05D009444 2.6e-128 462.2 257 86.4
Ca_20231_v3 Cicer arietinum L. HOM05D007481 ORTHO05D009444 7.7e-125 450.7 258 84.9
Lj3g0018029 Lotus japonicus HOM05D007481 ORTHO05D009444 7.7e-117 424.1 256 80.9
Glyma.03G058200 Glycine max HOM05D007481 ORTHO05D009444 3.8e-116 421.8 249 81.5
Phvul.010G001400 Phaseolus vulgaris HOM05D007481 ORTHO05D009444 1.6e-114 416.4 249 80.7
Lalb_Chr07g0193571 Lupinus albus HOM05D007481 ORTHO05D009444 1.0e-113 413.7 259 78.4
arahy.Tifrunner.gnm1.ann1.7RHW31 Arachis hypogaea HOM05D007481 ORTHO05D009444 6.8e-113 411.0 248 79.0
arahy.Tifrunner.gnm1.ann1.6XTR6T Arachis hypogaea HOM05D007481 ORTHO05D009444 3.3e-107 392.1 252 75.4
Thecc.05G016400 Theobroma cacao HOM05D007481 ORTHO05D009444 7.0e-102 374.4 252 71.4
COL.COLO4_14539 Corchorus olitorius HOM05D007481 ORTHO05D009444 2.0e-101 372.9 251 71.7
QL07p035708 Quercus lobata HOM05D007481 ORTHO05D009444 3.5e-101 372.1 249 72.7
Gohir.D09G160700 Gossypium hirsutum HOM05D007481 ORTHO05D009444 2.3e-100 369.4 250 70.8
Cfa017210 Carpinus fangiana HOM05D007481 ORTHO05D009444 6.6e-100 367.9 229 76.0
Manes.09G104600 Manihot esculenta HOM05D007481 ORTHO05D009444 1.1e-99 367.1 259 70.3
MD04G1152000 Malus domestica HOM05D007481 ORTHO05D009444 4.3e-99 365.2 250 69.6
RcHm_v2.0_Chr3g0463171 Rosa chinensis HOM05D007481 ORTHO05D009444 1.6e-98 363.2 249 71.1
TWI74G0365 Tripterygium wilfordii HOM05D007481 ORTHO05D009444 1.6e-98 363.2 252 69.8
CSS0016102 Camellia sinensis var. sinensis HOM05D007481 ORTHO05D009444 2.1e-98 362.8 251 70.1
Actinidia11588 Actinidia chinensis HOM05D007481 ORTHO05D009444 3.6e-98 362.1 251 69.7
Aa31LG1G23100 Aethionema arabicum HOM05D007481 ORTHO05D009444 8.1e-98 360.9 253 66.4
Potri.006G100100 Populus trichocarpa HOM05D007481 ORTHO05D009444 1.1e-97 360.5 252 69.0
CANSAT35G1044 Cannabis sativa HOM05D007481 ORTHO05D009444 1.4e-97 360.1 251 68.9
Prupe.6G277100 Prunus persica HOM05D007481 ORTHO05D009444 1.4e-97 360.1 250 69.6
Aqoxy2G00902 Aquilegia oxysepala HOM05D007481 ORTHO05D009444 3.1e-97 359.0 252 67.5
GSVIVG01033961001 Vitis vinifera HOM05D007481 ORTHO05D009444 4.0e-97 358.6 251 70.1
CiPaw.10G156500 Carya illinoinensis HOM05D007481 ORTHO05D009444 5.2e-97 358.2 250 71.2
Nn2g13707 Nelumbo nucifera HOM05D007481 ORTHO05D009444 8.9e-97 357.5 251 66.5
FAN05G5358 Fragaria x ananassa HOM05D007481 ORTHO05D009444 1.2e-96 357.1 249 69.9
Dinv04699 Davidia involucrata HOM05D007481 ORTHO05D009444 1.5e-96 356.7 251 69.7
Gorai.006G182400 Gossypium raimondii HOM05D007481 ORTHO05D009444 1.5e-96 356.7 285 62.5
PGR031G3607 Punica granatum HOM05D007481 ORTHO05D009444 2.6e-96 355.9 256 67.6
C02p00150 Brassica napus HOM05D007481 ORTHO05D009444 8.3e-95 350.9 253 66.8
Ciclev10012584m.g Citrus clementina HOM05D007481 ORTHO05D009444 1.4e-94 350.1 251 68.1
FAN02G0465 Fragaria x ananassa HOM05D007481 ORTHO05D009444 1.4e-94 350.1 245 69.8
ECA248G3524 Erigeron canadensis HOM05D007481 ORTHO05D009444 3.2e-94 349.0 250 68.0
BcaB05g21923 Brassica carinata HOM05D007481 ORTHO05D009444 4.1e-94 348.6 251 66.9
Migut.L02012 Erythranthe guttata HOM05D007481 ORTHO05D009444 5.4e-94 348.2 253 69.2
BcaC03g13078 Brassica carinata HOM05D007481 ORTHO05D009444 9.2e-94 347.4 253 66.0
BolC2t06012H Brassica oleracea HOM05D007481 ORTHO05D009444 9.2e-94 347.4 253 66.0
BraA02t04685Z Brassica rapa HOM05D007481 ORTHO05D009444 9.2e-94 347.4 253 65.6
Sp6g40760 Schrenkiella parvula HOM05D007481 ORTHO05D009444 9.2e-94 347.4 251 66.1
Cc06_g01380 Coffea canephora HOM05D007481 ORTHO05D009444 1.2e-93 347.1 249 67.1
Eucgr.B02817 Eucalyptus grandis HOM05D007481 ORTHO05D009444 1.2e-93 347.1 250 67.2
Nitab4.5_0003666g0020 Nicotiana tabacum HOM05D007481 ORTHO05D009444 1.2e-93 347.1 251 68.5
THA.LOC104816191 Tarenaya hassleriana HOM05D007481 ORTHO05D009444 1.6e-93 346.7 252 66.3
Sed0020862 Sechium edule HOM05D007481 ORTHO05D009444 2.7e-93 345.9 249 67.9
Sabra06G0076900 Salix brachista HOM05D007481 ORTHO05D009444 3.5e-93 345.5 252 66.3
Nitab4.5_0003024g0060 Nicotiana tabacum HOM05D007481 ORTHO05D009444 4.6e-93 345.1 265 67.2
Sopen10g034630 Solanum pennellii HOM05D007481 ORTHO05D009444 4.6e-93 345.1 249 68.3
CAN.G616.2 Capsicum annuum HOM05D007481 ORTHO05D009444 6.0e-93 344.7 250 68.0
Solyc10g085160.2 Solanum lycopersicum HOM05D007481 ORTHO05D009444 7.8e-93 344.4 249 67.9
SGA_v2.0_scaffold240G44095 Striga asiatica HOM05D003907 ORTHO05D004819 7.8e-93 344.4 253 66.8
AL6G10600 Arabidopsis lyrata HOM05D007481 ORTHO05D009444 1.0e-92 344.0 251 66.1
Thhalv10014504m.g Eutrema salsugineum HOM05D007481 ORTHO05D009444 1.3e-92 343.6 251 66.5
PGSC0003DMG400011097 Solanum tuberosum HOM05D007481 ORTHO05D009444 1.3e-92 343.6 249 67.1
HanXRQChr01g0007111 Helianthus annuus HOM05D007481 ORTHO05D009444 1.7e-92 343.2 250 68.0
CsaV3_4G026270 Cucumis sativus L. HOM05D007481 ORTHO05D009444 2.3e-92 342.8 249 67.9
AT5G01470 Arabidopsis thaliana HOM05D007481 ORTHO05D009444 1.9e-91 339.7 251 66.1
ClCG04G007010 Citrullus lanatus HOM05D007481 ORTHO05D009444 1.9e-91 339.7 249 67.1
Peaxi162Scf00009g01813 Petunia axillaris HOM05D007481 ORTHO05D009444 5.6e-91 338.2 250 66.0
Carub.0006s0036 Capsella rubella HOM05D007481 ORTHO05D009444 9.5e-91 337.4 252 64.3
MSTRG.10219 Avicennia marina HOM05D007481 ORTHO05D009444 2.8e-90 335.9 261 64.0
FAN14G0098 Fragaria x ananassa HOM05D007481 ORTHO05D009444 2.8e-90 335.9 309 56.6
CARHR211840 Cardamine hirsuta HOM05D007481 ORTHO05D009444 6.2e-90 334.7 252 64.7
Sc07g0006570 Simmondsia chinensis HOM05D007481 ORTHO05D009444 6.8e-89 331.3 249 66.3
PSO801G0715 Papaver somniferum HOM05D007481 ORTHO05D009444 2.2e-87 326.2 250 62.0
Duzib093G0021 Durio zibethinus HOM05D007481 ORTHO05D009444 6.4e-87 324.7 202 77.2
ATR0618G339 Amborella trichopoda HOM05D007481 ORTHO05D009444 2.7e-85 319.3 252 60.7
PSO339G5056 Papaver somniferum HOM05D007481 ORTHO05D009444 1.0e-84 317.4 250 62.8
Ah.02g115900 Amaranthus hybridus HOM05D003907 ORTHO05D004819 3.0e-84 315.8 266 59.8
FAN09G2325 Fragaria x ananassa HOM05D007481 ORTHO05D009444 1.5e-83 313.5 249 63.1
Lj3A953G52 Lonicera japonica HOM05D007481 ORTHO05D009444 6.2e-82 308.1 250 63.2
unitig_736.g22787 Utricularia gibba HOM05D007481 ORTHO05D009444 3.1e-81 305.8 242 61.2
Os03g0826700 Oryza sativa ssp. japonica HOM05D007481 ORTHO05D009444 2.0e-80 303.1 251 59.8
vmacro20262 Vaccinium macrocarpon HOM05D007481 ORTHO05D009444 3.4e-80 302.4 255 61.6
SEGI_08492 Sequoiadendron giganteum HOM05D007481 ORTHO05D009444 1.7e-79 300.1 285 51.9
Zm00001eb063270 Zea mays HOM05D007481 ORTHO05D009444 4.9e-79 298.5 249 55.8
Rhsim05G0214800 Rhododendron simsii HOM05D007481 ORTHO05D009444 1.1e-78 297.4 309 51.5
Hund11009 Selenicereus undatus HOM05D007481 ORTHO05D009444 5.4e-78 295.0 277 56.0
Lsat_1_v5_gn_5_149561 Lactuca sativa HOM05D007481 ORTHO05D009444 7.1e-78 294.7 252 59.1
Gohir.A09G165100 Gossypium hirsutum HOM05D007481 ORTHO05D009444 2.1e-77 293.1 203 68.5
FvH4_6g11480 Fragaria vesca HOM05D007481 ORTHO05D009444 3.1e-73 279.3 204 69.6
Haze_20985 Corylus avellana HOM05D007481 ORTHO05D009444 6.9e-73 278.1 251 59.8
Pp3c17_21930 Physcomitrium patens HOM05D007481 ORTHO05D009444 2.6e-72 276.2 277 52.3
MELO3C003292.2 Cucumis melo HOM05D007481 ORTHO05D009444 9.9e-72 274.2 200 66.5
Cpa.g.sc11.154 Carica papaya HOM05D007481 ORTHO05D009444 1.7e-71 273.5 257 56.8
CDE02G3625 Ceratophyllum demersum HOM05D007481 ORTHO05D009444 4.9e-71 271.9 188 68.1
TAR633G1799 Trochodendron aralioides HOM05D007481 ORTHO05D009444 4.9e-71 271.9 255 55.3
SalBow4G1731 Salvia bowleyana HOM05D007481 ORTHO05D009444 6.4e-71 271.6 186 69.4
AagrBONN_evm.TU.Sc2ySwM_228.1780 Anthoceros agrestis HOM05D007481 ORTHO05D009444 1.1e-70 270.8 212 60.4
SMO119G0350 Selaginella moellendorffii HOM05D007481 ORTHO05D009444 1.2e-69 267.3 211 58.3
Mapoly0103s0024 Marchantia polymorpha HOM05D007481 ORTHO05D009444 2.7e-69 266.2 274 50.7
CBR_g4113 Chara braunii HOM05D007481 ORTHO05D009444 4.6e-61 238.8 284 44.4
FAN14G2270 Fragaria x ananassa HOM05D000872 ORTHO05D000777 1.5e-59 233.8 296 47.3
VMungo0331G0457 Vigna mungo HOM05D007481 ORTHO05D009444 2.4e-57 226.5 141 78.7
MBI14_g30737_MAGBIO Magnolia biondii HOM05D007481 ORTHO05D009444 9.0e-57 224.6 249 47.0
DCAR_015418 Daucus carota HOM05D007481 ORTHO05D009444 3.1e-49 199.5 144 68.8
HPP92_003771 Vanilla planifolia HOM05D007481 ORTHO05D009444 6.5e-47 191.8 186 53.2
Atru.chr8.2241 Acer truncatum HOM05D007481 ORTHO05D009444 1.3e-44 184.1 117 70.9
Oeu006297.1 Olea europaea HOM05D007481 ORTHO05D009444 2.8e-26 123.2 93 65.6
EL10Ac5g12562 Beta vulgaris HOM05D007481 ORTHO05D009444 4.8e-26 122.5 101 59.4
Eucgr.B02818 Eucalyptus grandis HOM05D007481 ORTHO05D009444 8.0e-21 105.1 85 60.0
AUR62030437 Chenopodium quinoa HOM05D007481 ORTHO05D009444 1.3e-10 71.2 37 75.7
Zm00001eb229980 Zea mays HOM05D006745 ORTHO05D008449 4.5e-08 62.8 120 31.7
PSO731G0124 Papaver somniferum HOM05D005677 ORTHO05D006966 5.9e-08 62.4 243 26.7
Mapoly0001s0305 Marchantia polymorpha HOM05D002956 ORTHO05D008031 7.7e-08 62.0 140 31.4
PSO675G1483 Papaver somniferum HOM05D006745 ORTHO05D008449 7.7e-08 62.0 153 28.1
PSO541G1183 Papaver somniferum HOM05D006745 ORTHO05D008449 1.0e-07 61.6 120 30.8
Actinidia19186 Actinidia chinensis HOM05D005677 ORTHO05D006966 1.3e-07 61.2 250 29.6
PSO210G3110 Papaver somniferum HOM05D005677 ORTHO05D006966 2.2e-07 60.5 245 26.5
Pp3c3_3170 Physcomitrium patens HOM05D006745 ORTHO05D008449 2.2e-07 60.5 119 28.6
QL06p046093 Quercus lobata HOM05D005677 ORTHO05D006966 2.2e-07 60.5 207 27.5
PGSC0003DMG402022530 Solanum tuberosum HOM05D006469 ORTHO05D008034 3.8e-07 59.7 138 29.7
Lsat_1_v5_gn_3_71521 Lactuca sativa HOM05D006745 ORTHO05D008449 5.0e-07 59.3 120 28.3
THA.LOC104826460 Tarenaya hassleriana HOM05D002956 ORTHO05D008031 5.0e-07 59.3 140 28.6
EL10Ac4g10091 Beta vulgaris HOM05D002956 ORTHO05D008031 8.5e-07 58.5 127 23.6
Lalb_Chr09g0321491 Lupinus albus HOM05D006745 ORTHO05D008449 1.5e-06 57.8 120 27.5
Oeu041446.1 Olea europaea HOM05D005677 ORTHO05D006966 1.5e-06 57.8 155 27.7
Mapoly0041s0084 Marchantia polymorpha HOM05D006745 ORTHO05D008449 1.9e-06 57.4 117 26.5
Sopen03g006220 Solanum pennellii HOM05D006469 ORTHO05D008034 1.9e-06 57.4 138 28.3
ECA246G0119 Erigeron canadensis HOM05D006745 ORTHO05D008449 2.5e-06 57.0 120 28.3
vmacro17831 Vaccinium macrocarpon HOM05D005677 ORTHO05D006966 2.5e-06 57.0 257 24.1
Hma1.2p1_0224F.1_g094650 Hydrangea macrophylla HOM05D005677 ORTHO05D006966 3.2e-06 56.6 216 25.9
TAR625G0490 Trochodendron aralioides HOM05D005677 ORTHO05D006966 3.2e-06 56.6 197 25.4
FAN26G2780 Fragaria x ananassa HOM05D005677 ORTHO05D006966 4.2e-06 56.2 176 27.3
HanXRQChr09g0261461 Helianthus annuus HOM05D005677 ORTHO05D006966 4.2e-06 56.2 119 33.6
Cfa004307 Carpinus fangiana HOM05D005677 ORTHO05D006966 5.5e-06 55.8 198 27.8
RcHm_v2.0_Chr2g0101571 Rosa chinensis HOM05D005677 ORTHO05D006966 5.5e-06 55.8 235 26.4
FvH4_1g13310 Fragaria vesca HOM05D005677 ORTHO05D006966 7.2e-06 55.5 176 27.3
Lalb_Chr15g0078511 Lupinus albus HOM05D002956 ORTHO05D008031 7.2e-06 55.5 143 26.6
SMO307G0066 Selaginella moellendorffii HOM05D002553 ORTHO05D002767 7.2e-06 55.5 141 23.4
ECA234G4475 Erigeron canadensis HOM05D001920 ORTHO05D004895 9.4e-06 55.1 157 26.1
HPP92_012950 Vanilla planifolia HOM05D006745 ORTHO05D008449 9.4e-06 55.1 118 27.1


User provided reference genes

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