Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G13312 Trifolium pratense HOM05D006325 ORTHO05D007878 1.9e-36 155.6 94 100.0
TPR.G21965 Trifolium pratense HOM05D006325 ORTHO05D007878 1.1e-31 139.8 94 89.4
Medtr5g077640 Medicago truncatula HOM05D006325 ORTHO05D007878 1.9e-25 119.0 94 75.5
Psat7g080320 Pisum sativum HOM05D006325 ORTHO05D007878 1.6e-24 115.9 94 73.4
Ca_18164_v3 Cicer arietinum L. HOM05D006325 ORTHO05D007878 4.0e-23 111.3 95 73.7
Psat7g080360 Pisum sativum HOM05D006325 ORTHO05D007878 1.2e-22 109.8 95 71.6
Psat7g080440 Pisum sativum HOM05D006325 ORTHO05D007878 1.5e-22 109.4 95 77.9
Medtr4g083110 Medicago truncatula HOM05D006325 ORTHO05D007878 3.4e-22 108.2 96 71.9
Phvul.002G178300 Phaseolus vulgaris HOM05D006325 ORTHO05D007878 1.7e-21 105.9 94 68.1
Phvul.002G179400 Phaseolus vulgaris HOM05D006325 ORTHO05D007878 1.7e-21 105.9 94 68.1
Lalb_Chr13g0293971 Lupinus albus HOM05D006325 ORTHO05D007878 4.6e-19 97.8 94 62.8
Glyma.08G099000 Glycine max HOM05D006325 ORTHO05D007878 1.3e-18 96.3 94 64.9
TPR.G34042 Trifolium pratense HOM05D006325 ORTHO05D007878 1.3e-18 96.3 94 64.9
Glyma.05G143000 Glycine max HOM05D006325 ORTHO05D007878 1.9e-17 92.4 94 69.1
Lj4g0007216 Lotus japonicus HOM05D006325 ORTHO05D007878 2.4e-15 85.5 95 66.3
Lj4g0010729 Lotus japonicus HOM05D006325 ORTHO05D007878 9.0e-15 83.6 96 63.5
RcHm_v2.0_Chr5g0014631 Rosa chinensis HOM05D006325 ORTHO05D007878 9.0e-15 83.6 89 51.7
Medtr5g077680 Medicago truncatula HOM05D006325 ORTHO05D007878 1.3e-13 79.7 53 81.1
Medtr8g079458 Medicago truncatula HOM05D006325 ORTHO05D007878 1.3e-13 79.7 53 81.1
FvH4_3g05130 Fragaria vesca HOM05D006325 ORTHO05D007878 2.9e-13 78.6 89 51.7
Lalb_Chr07g0187521 Lupinus albus HOM05D006325 ORTHO05D007878 3.8e-13 78.2 103 55.3
Medtr4g012020 Medicago truncatula HOM05D006325 ORTHO05D007878 3.8e-13 78.2 53 79.2
Medtr1437s0010 Medicago truncatula HOM05D006325 ORTHO05D007878 8.5e-13 77.0 53 77.4
FAN11G2857 Fragaria x ananassa HOM05D006325 ORTHO05D007878 1.2e-11 73.2 89 52.8
FAN21G1261 Fragaria x ananassa HOM05D006325 ORTHO05D007878 3.6e-11 71.6 89 51.7
FAN25G3009 Fragaria x ananassa HOM05D006325 ORTHO05D007878 3.6e-11 71.6 89 51.7
Potri.011G081001 Populus trichocarpa HOM05D006325 ORTHO05D007878 3.6e-11 71.6 94 44.7
PGSC0003DMG400011149 Solanum tuberosum HOM05D006325 ORTHO05D007878 4.6e-11 71.2 94 50.0
FAN16G1041 Fragaria x ananassa HOM05D006325 ORTHO05D007878 7.9e-11 70.5 89 51.7
FAN16G2667 Fragaria x ananassa HOM05D006325 ORTHO05D007878 7.9e-11 70.5 89 51.7
Nitab4.5_0003551g0100 Nicotiana tabacum HOM05D006325 ORTHO05D007878 7.9e-11 70.5 92 50.0
CAN.G160.11 Capsicum annuum HOM05D006325 ORTHO05D007878 1.0e-10 70.1 92 48.9
Hma1.2p1_0594F.1_g185940 Hydrangea macrophylla HOM05D006325 ORTHO05D007878 1.0e-10 70.1 92 51.1
CSS0005985 Camellia sinensis var. sinensis HOM05D006325 ORTHO05D007878 1.4e-10 69.7 91 50.5
Nitab4.5_0003551g0110 Nicotiana tabacum HOM05D006325 ORTHO05D007878 1.8e-10 69.3 90 50.0
Duzib192G0952 Durio zibethinus HOM05D006325 ORTHO05D007878 2.3e-10 68.9 95 55.8
CSS0005499 Camellia sinensis var. sinensis HOM05D006325 ORTHO05D007878 3.0e-10 68.6 91 49.5
Potri.004G133180 Populus trichocarpa HOM05D006325 ORTHO05D007878 3.0e-10 68.6 94 42.6
PGSC0003DMG403011204 Solanum tuberosum HOM05D006325 ORTHO05D007878 3.0e-10 68.6 89 50.6
QL05p055432 Quercus lobata HOM05D006325 ORTHO05D007878 3.9e-10 68.2 89 56.2
PGSC0003DMG402022984 Solanum tuberosum HOM05D006325 ORTHO05D007878 3.9e-10 68.2 93 53.8
CsaV3_6G051960 Cucumis sativus L. HOM05D006325 ORTHO05D007878 6.7e-10 67.4 96 46.9
Nitab4.5_0002611g0130 Nicotiana tabacum HOM05D006325 ORTHO05D007878 8.8e-10 67.0 93 46.2
Sabra11G0064500 Salix brachista HOM05D006325 ORTHO05D007878 8.8e-10 67.0 94 43.6
PGSC0003DMG401022984 Solanum tuberosum HOM05D006325 ORTHO05D007878 8.8e-10 67.0 94 47.9
Cpa.g.sc17.42 Carica papaya HOM05D006325 ORTHO05D007878 1.5e-09 66.2 93 52.7
Ciclev10026858m.g Citrus clementina HOM05D006325 ORTHO05D007878 1.5e-09 66.2 84 47.6
PSO541G2396 Papaver somniferum HOM05D006325 ORTHO05D007878 1.5e-09 66.2 95 42.1
TWI09G0296 Tripterygium wilfordii HOM05D006325 ORTHO05D007878 1.5e-09 66.2 93 48.4
Ciclev10026747m.g Citrus clementina HOM05D006325 ORTHO05D007878 2.5e-09 65.5 84 46.4
Thecc.06G145500 Theobroma cacao HOM05D006325 ORTHO05D007878 2.5e-09 65.5 82 47.6
ClCG03G006550 Citrullus lanatus HOM05D006325 ORTHO05D007878 3.3e-09 65.1 83 44.6
Gorai.009G153100 Gossypium raimondii HOM05D006325 ORTHO05D007878 4.3e-09 64.7 94 43.6
MD10G1258900 Malus domestica HOM05D006325 ORTHO05D007878 5.7e-09 64.3 98 42.9
Prupe.4G084800 Prunus persica HOM05D006325 ORTHO05D007878 9.7e-09 63.5 98 50.0
Sopen07g002010 Solanum pennellii HOM05D006325 ORTHO05D007878 9.7e-09 63.5 96 46.9
MELO3C007112.2 Cucumis melo HOM05D006325 ORTHO05D007878 1.7e-08 62.8 94 43.6
CAN.G160.12 Capsicum annuum HOM05D006325 ORTHO05D007878 2.2e-08 62.4 106 50.0
Gohir.D05G149100 Gossypium hirsutum HOM05D006325 ORTHO05D007878 2.2e-08 62.4 93 43.0
Gohir.A05G146600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 2.8e-08 62.0 93 43.0
QL04p045948 Quercus lobata HOM05D006325 ORTHO05D007878 2.8e-08 62.0 84 46.4
Carub.0001s2849 Capsella rubella HOM05D006325 ORTHO05D007878 3.7e-08 61.6 59 59.3
QL04p045922 Quercus lobata HOM05D006325 ORTHO05D007878 4.8e-08 61.2 61 57.4
TWI53G1846 Tripterygium wilfordii HOM05D006325 ORTHO05D007878 6.3e-08 60.8 60 61.7
CiPaw.10G089300 Carya illinoinensis HOM05D006325 ORTHO05D007878 8.2e-08 60.5 94 42.6
Duzib160G0583 Durio zibethinus HOM05D006325 ORTHO05D007878 8.2e-08 60.5 54 63.0
COL.COLO4_31021 Corchorus olitorius HOM05D006325 ORTHO05D007878 1.4e-07 59.7 91 51.6
Haze_05647 Corylus avellana HOM05D006325 ORTHO05D007878 1.4e-07 59.7 95 43.2
BcaB07g32625 Brassica carinata HOM05D006325 ORTHO05D007878 1.8e-07 59.3 56 57.1
Sed0008419 Sechium edule HOM05D006325 ORTHO05D007878 1.8e-07 59.3 89 41.6
BcaC05g27053 Brassica carinata HOM05D006325 ORTHO05D007878 2.4e-07 58.9 56 57.1
C05p29100 Brassica napus HOM05D006325 ORTHO05D007878 2.4e-07 58.9 56 57.1
BolC5t31641H Brassica oleracea HOM05D006325 ORTHO05D007878 2.4e-07 58.9 56 57.1
BraA09t39151Z Brassica rapa HOM05D006325 ORTHO05D007878 2.4e-07 58.9 56 57.1
CAN.G2122.1 Capsicum annuum HOM05D006325 ORTHO05D007878 2.4e-07 58.9 108 49.1
Thhalv10009295m.g Eutrema salsugineum HOM05D006325 ORTHO05D007878 2.4e-07 58.9 58 60.3
Manes.17G073700 Manihot esculenta HOM05D006325 ORTHO05D007878 2.4e-07 58.9 94 50.0
Nitab4.5_0008310g0030 Nicotiana tabacum HOM05D006325 ORTHO05D007878 2.4e-07 58.9 55 58.2
CAN.G2122.2 Capsicum annuum HOM05D006325 ORTHO05D007878 3.1e-07 58.5 86 53.5
Sopen11g011030 Solanum pennellii HOM05D006325 ORTHO05D007878 3.1e-07 58.5 87 55.2
Aa31LG6G5500 Aethionema arabicum HOM05D006325 ORTHO05D007878 4.1e-07 58.2 43 67.4
CANSAT35G0285 Cannabis sativa HOM05D006325 ORTHO05D007878 4.1e-07 58.2 53 56.6
Nn3g20453 Nelumbo nucifera HOM05D006325 ORTHO05D007878 4.1e-07 58.2 91 44.0
Solyc11g020860.1 Solanum lycopersicum HOM05D006325 ORTHO05D007878 4.1e-07 58.2 87 44.8
A09p36260 Brassica napus HOM05D006325 ORTHO05D007878 5.3e-07 57.8 58 56.9
Ciclev10017179m.g Citrus clementina HOM05D006325 ORTHO05D007878 5.3e-07 57.8 98 40.8
MELO3C002763.2 Cucumis melo HOM05D006325 ORTHO05D007878 5.3e-07 57.8 86 44.2
Gohir.A10G043400 Gossypium hirsutum HOM05D006325 ORTHO05D007878 6.9e-07 57.4 59 49.2
Lsat_1_v5_gn_0_34220 Lactuca sativa HOM05D006325 ORTHO05D007878 6.9e-07 57.4 47 59.6
CsaV3_1G036810 Cucumis sativus L. HOM05D006325 ORTHO05D007878 9.1e-07 57.0 84 41.7
Gohir.A06G139600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 9.1e-07 57.0 55 58.2
PGSC0003DMG400009263 Solanum tuberosum HOM05D006325 ORTHO05D007878 9.1e-07 57.0 87 50.6
AL1G44210 Arabidopsis lyrata HOM05D006325 ORTHO05D007878 1.5e-06 56.2 77 45.5
AT1G30260 Arabidopsis thaliana HOM05D006325 ORTHO05D007878 1.5e-06 56.2 59 55.9
BcaB03g13839 Brassica carinata HOM05D006325 ORTHO05D007878 1.5e-06 56.2 56 55.4
A07p10030 Brassica napus HOM05D006325 ORTHO05D007878 1.5e-06 56.2 56 55.4
BolC7t42032H Brassica oleracea HOM05D006325 ORTHO05D007878 1.5e-06 56.2 56 55.4
BraA07t28796Z Brassica rapa HOM05D006325 ORTHO05D007878 1.5e-06 56.2 56 55.4
CAN.G160.10 Capsicum annuum HOM05D006325 ORTHO05D007878 1.5e-06 56.2 103 49.5
DCAR_007876 Daucus carota HOM05D006325 ORTHO05D007878 1.5e-06 56.2 63 54.0
Eucgr.D00273 Eucalyptus grandis HOM05D006325 ORTHO05D007878 1.5e-06 56.2 102 43.1
Sp1g26100 Schrenkiella parvula HOM05D006325 ORTHO05D007878 1.5e-06 56.2 64 54.7
Sopen07g002000 Solanum pennellii HOM05D006325 ORTHO05D007878 1.5e-06 56.2 94 46.8
CARHR029650 Cardamine hirsuta HOM05D006325 ORTHO05D007878 2.0e-06 55.8 49 59.2
Manes.15G124400 Manihot esculenta HOM05D006325 ORTHO05D007878 2.0e-06 55.8 74 45.9
Medtr4g083130 Medicago truncatula HOM05D006325 ORTHO05D007878 2.0e-06 55.8 94 50.0
Sed0022207 Sechium edule HOM05D006325 ORTHO05D007878 2.0e-06 55.8 88 45.5
BcaC06g35496 Brassica carinata HOM05D006325 ORTHO05D007878 2.6e-06 55.5 61 52.5
Lsat_1_v5_gn_7_27621 Lactuca sativa HOM05D006325 ORTHO05D007878 2.6e-06 55.5 94 38.3
Peaxi162Scf00062g00009 Petunia axillaris HOM05D006325 ORTHO05D007878 2.6e-06 55.5 62 50.0
Gohir.D06G144350 Gossypium hirsutum HOM05D006325 ORTHO05D007878 3.4e-06 55.1 67 53.7
Gorai.010G168000 Gossypium raimondii HOM05D006325 ORTHO05D007878 3.4e-06 55.1 67 53.7
Gohir.D10G044600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 4.5e-06 54.7 56 50.0
Gorai.011G047600 Gossypium raimondii HOM05D006325 ORTHO05D007878 4.5e-06 54.7 56 50.0
Oeu030955.1 Olea europaea HOM05D006325 ORTHO05D007878 5.9e-06 54.3 37 67.6
ClCG01G024840 Citrullus lanatus HOM05D006325 ORTHO05D007878 7.7e-06 53.9 87 41.4
Cc00_g01980 Coffea canephora HOM05D006325 ORTHO05D007878 7.7e-06 53.9 89 44.9


User provided reference genes

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