Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G13309 Trifolium pratense HOM05D000149 ORTHO05D000076 3.2e-28 127.9 73 100.0
TPR.G39614 Trifolium pratense HOM05D000149 ORTHO05D000076 8.0e-27 123.2 65 95.4
TPR.G35366 Trifolium pratense HOM05D000149 ORTHO05D000076 8.8e-26 119.8 65 92.3
Medtr5g093900 Medicago truncatula HOM05D000149 ORTHO05D000076 1.2e-25 119.4 65 92.3
Medtr3g052700 Medicago truncatula HOM05D000149 ORTHO05D000076 9.8e-25 116.3 65 90.8
Phvul.008G272800 Phaseolus vulgaris HOM05D000149 ORTHO05D000076 3.1e-23 111.3 65 87.7
Glyma.14G018100 Glycine max HOM05D000149 ORTHO05D000076 4.1e-23 110.9 64 87.5
Glyma.02G295300 Glycine max HOM05D000149 ORTHO05D000076 5.4e-23 110.5 65 86.2
TAR624G0308 Trochodendron aralioides HOM05D000149 ORTHO05D000076 1.2e-22 109.4 63 85.7
LjContig00272g0014861 Lotus japonicus HOM05D000149 ORTHO05D000076 1.6e-22 109.0 65 84.6
TPR.G32237 Trifolium pratense HOM05D000149 ORTHO05D000076 2.0e-22 108.6 65 84.6
Lj6g0027019 Lotus japonicus HOM05D000149 ORTHO05D000076 2.7e-22 108.2 63 87.3
Psat0s1327g0040 Pisum sativum HOM05D000149 ORTHO05D000076 4.5e-22 107.5 65 83.1
VMungo0647G1670 Vigna mungo HOM05D000149 ORTHO05D000076 5.9e-22 107.1 62 87.1
Ca_14767_v3 Cicer arietinum L. HOM05D000149 ORTHO05D000076 1.7e-21 105.5 65 81.5
Ca_29743_v3 Cicer arietinum L. HOM05D000149 ORTHO05D000076 1.7e-21 105.5 65 81.5
VMungo0540G0042 Vigna mungo HOM05D000149 ORTHO05D000076 1.7e-21 105.5 65 81.5
CiPaw.11G194900 Carya illinoinensis HOM05D000149 ORTHO05D000076 2.3e-21 105.1 63 84.1
Duzib213G0825 Durio zibethinus HOM05D000149 ORTHO05D000076 2.3e-21 105.1 63 84.1
Gohir.A01G084900 Gossypium hirsutum HOM05D000149 ORTHO05D000076 2.3e-21 105.1 63 84.1
Gohir.D01G071300 Gossypium hirsutum HOM05D000149 ORTHO05D000076 2.3e-21 105.1 63 84.1
Gorai.002G094100 Gossypium raimondii HOM05D000149 ORTHO05D000076 2.3e-21 105.1 63 84.1
TAR626G0908 Trochodendron aralioides HOM05D000149 ORTHO05D000076 2.9e-21 104.8 63 82.5
MELO3C013127.2 Cucumis melo HOM05D000149 ORTHO05D000076 3.8e-21 104.4 63 84.1
CsaV3_7G020980 Cucumis sativus L. HOM05D000149 ORTHO05D000076 3.8e-21 104.4 63 84.1
Duzib170G0775 Durio zibethinus HOM05D000149 ORTHO05D000076 3.8e-21 104.4 63 84.1
Glyma.18G089800 Glycine max HOM05D000149 ORTHO05D000076 3.8e-21 104.4 62 83.9
Thecc.07G027700 Theobroma cacao HOM05D000149 ORTHO05D000076 3.8e-21 104.4 63 82.5
Cpa.g.sc12.233 Carica papaya HOM05D000149 ORTHO05D000076 6.6e-21 103.6 63 82.5
COL.COLO4_09740 Corchorus olitorius HOM05D000149 ORTHO05D000076 6.6e-21 103.6 63 82.5
Glyma.08G322300 Glycine max HOM05D000149 ORTHO05D000076 6.6e-21 103.6 61 85.2
Cfa020274 Carpinus fangiana HOM05D000149 ORTHO05D000076 8.6e-21 103.2 63 82.5
Dinv22228 Davidia involucrata HOM05D000149 ORTHO05D000076 8.6e-21 103.2 63 82.5
Lalb_Chr18g0050311 Lupinus albus HOM05D000149 ORTHO05D000076 8.6e-21 103.2 65 80.0
Manes.15G066100 Manihot esculenta HOM05D000149 ORTHO05D000076 8.6e-21 103.2 63 81.0
Psat2g009960 Pisum sativum HOM05D000149 ORTHO05D000076 1.1e-20 102.8 61 83.6
TWI38G0730 Tripterygium wilfordii HOM05D000149 ORTHO05D000076 1.1e-20 102.8 61 83.6
Lalb_Chr10g0107171 Lupinus albus HOM05D000149 ORTHO05D000076 1.5e-20 102.4 65 83.1
Lalb_Chr15g0081771 Lupinus albus HOM05D000149 ORTHO05D000076 1.5e-20 102.4 64 78.1
CANSAT11G0403 Cannabis sativa HOM05D000149 ORTHO05D000076 3.3e-20 101.3 61 82.0
PSO675G1072 Papaver somniferum HOM05D000149 ORTHO05D000076 3.3e-20 101.3 63 79.4
CSS0036542 Camellia sinensis var. sinensis HOM05D000149 ORTHO05D000076 4.2e-20 100.9 63 82.5
TWI39G0217 Tripterygium wilfordii HOM05D000149 ORTHO05D000076 4.2e-20 100.9 61 85.2
ClCG09G011080 Citrullus lanatus HOM05D000149 ORTHO05D000076 5.5e-20 100.5 63 82.5
AUR62020338 Chenopodium quinoa HOM05D000149 ORTHO05D000076 9.5e-20 99.8 60 80.0
FAN16G0629 Fragaria x ananassa HOM05D000149 ORTHO05D000076 9.5e-20 99.8 62 79.0
FAN21G0558 Fragaria x ananassa HOM05D000149 ORTHO05D000076 9.5e-20 99.8 62 79.0
CSS0017176 Camellia sinensis var. sinensis HOM05D000149 ORTHO05D000076 1.2e-19 99.4 63 81.0
Phvul.006G048600 Phaseolus vulgaris HOM05D000149 ORTHO05D000076 1.2e-19 99.4 61 82.0
Medtr3g054330 Medicago truncatula HOM05D000149 ORTHO05D000076 1.6e-19 99.0 61 80.3
PSO541G2646 Papaver somniferum HOM05D000149 ORTHO05D000076 1.6e-19 99.0 63 77.8
Potri.001G359000 Populus trichocarpa HOM05D000149 ORTHO05D000076 1.6e-19 99.0 61 82.0
Actinidia05059 Actinidia chinensis HOM05D000149 ORTHO05D000076 2.1e-19 98.6 63 77.8
FvH4_3g23570 Fragaria vesca HOM05D000149 ORTHO05D000076 2.1e-19 98.6 62 80.6
FAN11G3695 Fragaria x ananassa HOM05D000149 ORTHO05D000076 2.1e-19 98.6 62 80.6
FAN25G2091 Fragaria x ananassa HOM05D000149 ORTHO05D000076 2.1e-19 98.6 62 79.0
QL08p007603 Quercus lobata HOM05D000149 ORTHO05D000076 2.1e-19 98.6 63 81.0
Sabra16G0236800 Salix brachista HOM05D000149 ORTHO05D000076 2.1e-19 98.6 63 81.0
Ciclev10008599m.g Citrus clementina HOM05D000149 ORTHO05D000076 2.8e-19 98.2 63 79.4
Eucgr.F00649 Eucalyptus grandis HOM05D000149 ORTHO05D000076 2.8e-19 98.2 63 79.4
RcHm_v2.0_Chr5g0041561 Rosa chinensis HOM05D000149 ORTHO05D000076 3.6e-19 97.8 63 77.8
AUR62015885 Chenopodium quinoa HOM05D000149 ORTHO05D000076 4.7e-19 97.4 59 79.7
Manes.03G136100 Manihot esculenta HOM05D000149 ORTHO05D000076 4.7e-19 97.4 61 75.4
PGR083G2094 Punica granatum HOM05D000149 ORTHO05D000076 4.7e-19 97.4 61 77.0
Sed0001941 Sechium edule HOM05D000149 ORTHO05D000076 4.7e-19 97.4 63 76.2
Aqoxy1G02848 Aquilegia oxysepala HOM05D000149 ORTHO05D000076 6.1e-19 97.1 63 77.8
EL10Ac4g07686 Beta vulgaris HOM05D000149 ORTHO05D000076 6.1e-19 97.1 62 74.2
EL10Ac4g07688 Beta vulgaris HOM05D000149 ORTHO05D000076 6.1e-19 97.1 62 74.2
CSS0021333 Camellia sinensis var. sinensis HOM05D000149 ORTHO05D000076 6.1e-19 97.1 63 81.0
CSS0028053 Camellia sinensis var. sinensis HOM05D000149 ORTHO05D000076 6.1e-19 97.1 63 81.0
Oeu013112.1 Olea europaea HOM05D000149 ORTHO05D000076 6.1e-19 97.1 63 77.8
CiPaw.12G133800 Carya illinoinensis HOM05D000149 ORTHO05D000076 8.0e-19 96.7 61 78.7
Lj1A881T80 Lonicera japonica HOM05D000149 ORTHO05D000076 8.0e-19 96.7 61 80.3
MD11G1209300 Malus domestica HOM05D000149 ORTHO05D000076 8.0e-19 96.7 63 77.8
Atru.chr2.3535 Acer truncatum HOM05D000149 ORTHO05D000076 1.4e-18 95.9 64 75.0
Atru.chr2.3554 Acer truncatum HOM05D000149 ORTHO05D000076 1.4e-18 95.9 64 75.0
Cc05_g14330 Coffea canephora HOM05D000149 ORTHO05D000076 1.4e-18 95.9 63 73.0
HanXRQChr11g0334281 Helianthus annuus HOM05D000149 ORTHO05D000076 1.4e-18 95.9 61 78.7
Peaxi162Scf00339g01130 Petunia axillaris HOM05D000149 ORTHO05D000076 1.4e-18 95.9 63 74.6
Rhsim06G0223800 Rhododendron simsii HOM05D000149 ORTHO05D000076 1.4e-18 95.9 63 79.4
vmacro22306 Vaccinium macrocarpon HOM05D000149 ORTHO05D000076 1.4e-18 95.9 63 79.4
Lsat_1_v5_gn_0_36880 Lactuca sativa HOM05D000149 ORTHO05D000076 1.8e-18 95.5 61 77.0
GSVIVG01037730001 Vitis vinifera HOM05D000149 ORTHO05D000076 2.3e-18 95.1 61 73.8
DCAR_013200 Daucus carota HOM05D000149 ORTHO05D000076 3.0e-18 94.7 62 74.2
MD03G1193100 Malus domestica HOM05D000149 ORTHO05D000076 3.0e-18 94.7 63 76.2
Peaxi162Scf00235g00733 Petunia axillaris HOM05D000149 ORTHO05D000076 3.0e-18 94.7 63 76.2
Hund01953 Selenicereus undatus HOM05D000149 ORTHO05D000076 3.0e-18 94.7 61 77.0
Solyc12g014500.3 Solanum lycopersicum HOM05D000149 ORTHO05D000076 3.0e-18 94.7 61 78.7
Sopen12g007390 Solanum pennellii HOM05D000149 ORTHO05D000076 3.0e-18 94.7 61 78.7
MBI16_g42265_MAGBIO Magnolia biondii HOM05D000149 ORTHO05D000076 4.0e-18 94.4 61 77.0
Aa31LG3G11240 Aethionema arabicum HOM05D000149 ORTHO05D000076 5.2e-18 94.0 63 73.0
SalBow8G0875 Salvia bowleyana HOM05D000149 ORTHO05D000076 5.2e-18 94.0 63 74.6
Prupe.4G223900 Prunus persica HOM05D000149 ORTHO05D000076 6.8e-18 93.6 63 73.0
CAN.G337.53 Capsicum annuum HOM05D000149 ORTHO05D000076 1.2e-17 92.8 61 75.4
ECA236G3131 Erigeron canadensis HOM05D000149 ORTHO05D000076 1.5e-17 92.4 61 73.8
Nn1g07352 Nelumbo nucifera HOM05D000149 ORTHO05D000076 1.5e-17 92.4 63 71.4
Nitab4.5_0001160g0030 Nicotiana tabacum HOM05D000149 ORTHO05D000076 1.5e-17 92.4 61 75.4
Solyc07g064990.3 Solanum lycopersicum HOM05D000149 ORTHO05D000076 1.5e-17 92.4 61 75.4
PGSC0003DMG400012849 Solanum tuberosum HOM05D000149 ORTHO05D000076 1.5e-17 92.4 59 78.0
PGSC0003DMG400022203 Solanum tuberosum HOM05D000149 ORTHO05D000076 1.5e-17 92.4 61 75.4
Ah.04g166170 Amaranthus hybridus HOM05D000149 ORTHO05D000076 2.6e-17 91.7 59 76.3
Prupe.4G223700 Prunus persica HOM05D000149 ORTHO05D000076 2.6e-17 91.7 63 73.0
arahy.Tifrunner.gnm1.ann1.8B5KZC Arachis hypogaea HOM05D000149 ORTHO05D000076 3.4e-17 91.3 64 68.8
arahy.Tifrunner.gnm1.ann1.WGF1AW Arachis hypogaea HOM05D000149 ORTHO05D000076 3.4e-17 91.3 64 71.9
Sopen07g033200 Solanum pennellii HOM05D000149 ORTHO05D000076 3.4e-17 91.3 61 73.8
Migut.M01704 Erythranthe guttata HOM05D000149 ORTHO05D000076 4.4e-17 90.9 63 71.4
Nitab4.5_0003851g0010 Nicotiana tabacum HOM05D000149 ORTHO05D000076 4.4e-17 90.9 63 73.0
Prupe.2G265900 Prunus persica HOM05D000149 ORTHO05D000076 4.4e-17 90.9 63 69.8
THA.LOC104817688 Tarenaya hassleriana HOM05D000149 ORTHO05D000076 4.4e-17 90.9 63 71.4
arahy.Tifrunner.gnm1.ann1.A4GUBG Arachis hypogaea HOM05D000149 ORTHO05D000076 5.7e-17 90.5 64 71.9
Hma1.2p1_0036F.1_g023090 Hydrangea macrophylla HOM05D000149 ORTHO05D000076 5.7e-17 90.5 59 79.7
Hma1.2p1_0528F.1_g173100 Hydrangea macrophylla HOM05D000149 ORTHO05D000076 5.7e-17 90.5 59 79.7
Nitab4.5_0000168g0030 Nicotiana tabacum HOM05D000149 ORTHO05D000076 5.7e-17 90.5 61 75.4
THA.LOC104811634 Tarenaya hassleriana HOM05D000149 ORTHO05D000076 5.7e-17 90.5 63 73.0
Thhalv10015669m.g Eutrema salsugineum HOM05D000149 ORTHO05D000076 7.5e-17 90.1 62 71.0
AL8G30800 Arabidopsis lyrata HOM05D000149 ORTHO05D000076 1.3e-16 89.4 62 71.0
BcaC04g20253 Brassica carinata HOM05D000149 ORTHO05D000076 1.3e-16 89.4 62 71.0
A10p12530 Brassica napus HOM05D000149 ORTHO05D000076 1.3e-16 89.4 62 71.0
C09p45720 Brassica napus HOM05D000149 ORTHO05D000076 1.3e-16 89.4 62 71.0
BolC9t57455H Brassica oleracea HOM05D000149 ORTHO05D000076 1.3e-16 89.4 62 71.0
BraA10t43346Z Brassica rapa HOM05D000149 ORTHO05D000076 1.3e-16 89.4 62 71.0
CARHR268610 Cardamine hirsuta HOM05D000149 ORTHO05D000076 1.3e-16 89.4 62 71.0
Nitab4.5_0005221g0030 Nicotiana tabacum HOM05D000149 ORTHO05D000076 1.3e-16 89.4 61 73.8
Sp6g17180 Schrenkiella parvula HOM05D000149 ORTHO05D000076 1.3e-16 89.4 62 71.0
Carub.0008s1560 Capsella rubella HOM05D000149 ORTHO05D000076 1.7e-16 89.0 62 69.4
BcaB08g35887 Brassica carinata HOM05D000149 ORTHO05D000076 3.7e-16 87.8 62 71.0
Ah.06g182210 Amaranthus hybridus HOM05D000149 ORTHO05D000076 4.9e-16 87.4 59 69.5
AT5G55250 Arabidopsis thaliana HOM05D000149 ORTHO05D000076 1.8e-15 85.5 62 67.7
Os04g0665200 Oryza sativa ssp. japonica HOM05D000149 ORTHO05D000076 1.8e-15 85.5 63 63.5
ATR1101G064 Amborella trichopoda HOM05D000149 ORTHO05D000076 2.4e-15 85.1 58 65.5
Sc03g0008300 Simmondsia chinensis HOM05D000149 ORTHO05D000076 3.2e-15 84.7 60 70.0
SGA_v2.0_scaffold171G38906 Striga asiatica HOM05D000149 ORTHO05D000076 4.1e-15 84.3 59 69.5
CDE11G0067 Ceratophyllum demersum HOM05D000149 ORTHO05D000076 9.2e-15 83.2 61 67.2
Prupe.4G214300 Prunus persica HOM05D000149 ORTHO05D000076 1.2e-14 82.8 63 63.5
Sed0010838 Sechium edule HOM05D000149 ORTHO05D000076 2.7e-14 81.6 65 66.2
Prupe.4G223800 Prunus persica HOM05D000149 ORTHO05D000076 5.9e-14 80.5 63 63.5
SEGI_03521 Sequoiadendron giganteum HOM05D000149 ORTHO05D000076 1.5e-12 75.9 59 59.3
Os06g0323100 Oryza sativa ssp. japonica HOM05D000149 ORTHO05D000076 5.4e-07 57.4 59 50.8
unitig_899.g15283 Utricularia gibba HOM05D000149 ORTHO05D000076 4.6e-06 54.3 31 80.6


User provided reference genes

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