Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1329 Trifolium pratense HOM05D006865 ORTHO05D009005 1.4e-101 373.6 305 100.0
Medtr3g110138 Medicago truncatula HOM05D006865 ORTHO05D009005 3.4e-87 325.9 313 73.2
Ca_15607_v3 Cicer arietinum L. HOM05D006865 ORTHO05D009005 6.0e-84 315.1 313 80.8
Medtr3g110088 Medicago truncatula HOM05D006865 ORTHO05D009005 3.4e-79 299.3 313 70.0
Glyma.06G083600 Glycine max HOM05D006865 ORTHO05D009005 3.7e-65 252.7 322 60.2
Phvul.009G107700 Phaseolus vulgaris HOM05D006865 ORTHO05D009005 3.7e-65 252.7 310 65.8
VMungo1309G1411 Vigna mungo HOM05D006865 ORTHO05D009005 1.3e-62 244.2 306 65.4
Glyma.04G081900 Glycine max HOM05D006865 ORTHO05D009005 1.9e-61 240.4 197 67.5
Lj1g0027381 Lotus japonicus HOM05D006865 ORTHO05D009005 4.2e-61 239.2 301 61.1
Lalb_Chr23g0269541 Lupinus albus HOM05D006865 ORTHO05D009005 5.3e-56 222.2 322 62.4
Psat5g022760 Pisum sativum HOM05D006865 ORTHO05D009005 2.7e-52 209.9 160 75.6
arahy.Tifrunner.gnm1.ann1.ZC464Z Arachis hypogaea HOM05D006865 ORTHO05D009005 6.7e-51 205.3 312 67.3
arahy.Tifrunner.gnm1.ann1.T16V0S Arachis hypogaea HOM05D006865 ORTHO05D009005 8.7e-51 204.9 313 66.1
Haze_19694 Corylus avellana HOM05D006865 ORTHO05D009005 4.3e-50 202.6 308 56.8
Cfa016677 Carpinus fangiana HOM05D006865 ORTHO05D009005 8.2e-49 198.4 312 57.7
CiPaw.07G205700 Carya illinoinensis HOM05D006865 ORTHO05D009005 1.1e-48 198.0 319 47.0
QL12p029455 Quercus lobata HOM05D006865 ORTHO05D009005 4.5e-47 192.6 333 49.2
Duzib187G1827 Durio zibethinus HOM05D006865 ORTHO05D009005 2.5e-45 186.8 210 59.0
Ciclev10008902m.g Citrus clementina HOM05D006865 ORTHO05D009005 5.5e-45 185.7 319 55.2
FAN15G3339 Fragaria x ananassa HOM05D006865 ORTHO05D009005 1.6e-44 184.1 330 42.1
FAN27G2310 Fragaria x ananassa HOM05D006865 ORTHO05D009005 7.9e-44 181.8 332 41.9
TWI63G0791 Tripterygium wilfordii HOM05D006865 ORTHO05D009005 1.8e-43 180.6 333 52.3
Atru.chr7.2136 Acer truncatum HOM05D006865 ORTHO05D009005 3.0e-43 179.9 207 53.6
CsaV3_3G048620 Cucumis sativus L. HOM05D006865 ORTHO05D009005 5.1e-43 179.1 315 48.3
MELO3C003458.2 Cucumis melo HOM05D006865 ORTHO05D009005 6.7e-43 178.7 318 55.3
ClCG11G015200 Citrullus lanatus HOM05D006865 ORTHO05D009005 1.1e-42 177.9 316 47.8
FvH4_2g35860 Fragaria vesca HOM05D006865 ORTHO05D009005 1.1e-42 177.9 332 41.6
RcHm_v2.0_Chr6g0305961 Rosa chinensis HOM05D006865 ORTHO05D009005 1.5e-42 177.6 204 54.9
PGR044G0390 Punica granatum HOM05D006865 ORTHO05D009005 1.9e-42 177.2 201 55.7
CANSAT25G0847 Cannabis sativa HOM05D006865 ORTHO05D009005 4.3e-42 176.0 324 44.1
MD15G1095700 Malus domestica HOM05D006865 ORTHO05D009005 9.7e-42 174.9 331 48.6
Potri.006G240400 Populus trichocarpa HOM05D006865 ORTHO05D009005 1.3e-41 174.5 203 55.7
Nitab4.5_0000664g0200 Nicotiana tabacum HOM05D006865 ORTHO05D009005 3.1e-40 169.9 326 47.2
DCAR_007711 Daucus carota HOM05D006865 ORTHO05D009005 4.1e-40 169.5 315 56.5
Sed0006345 Sechium edule HOM05D006865 ORTHO05D009005 4.1e-40 169.5 309 44.0
Solyc11g071240.2 Solanum lycopersicum HOM05D006865 ORTHO05D009005 4.1e-40 169.5 321 47.4
Sabra06G0188000 Salix brachista HOM05D006865 ORTHO05D009005 5.3e-40 169.1 203 54.7
THA.LOC104814775 Tarenaya hassleriana HOM05D006865 ORTHO05D009005 3.4e-39 166.4 202 53.5
TAR636G1122 Trochodendron aralioides HOM05D006865 ORTHO05D009005 3.4e-39 166.4 201 62.7
Peaxi162Scf00276g00123 Petunia axillaris HOM05D006865 ORTHO05D009005 1.0e-38 164.9 326 45.7
Manes.16G071500 Manihot esculenta HOM05D006865 ORTHO05D009005 1.7e-38 164.1 200 54.0
Nitab4.5_0001567g0190 Nicotiana tabacum HOM05D006865 ORTHO05D009005 1.7e-38 164.1 327 46.8
Prupe.1G450700 Prunus persica HOM05D006865 ORTHO05D009005 2.2e-38 163.7 311 45.7
PSO210G5031 Papaver somniferum HOM05D006865 ORTHO05D009005 2.5e-37 160.2 207 48.8
PSO210G4422 Papaver somniferum HOM05D006865 ORTHO05D009005 3.2e-37 159.8 202 50.0
AT5G11550 Arabidopsis thaliana HOM05D006865 ORTHO05D009005 5.5e-37 159.1 316 47.8
Lj8A588T26 Lonicera japonica HOM05D006865 ORTHO05D009005 9.4e-37 158.3 317 55.8
CARHR201670 Cardamine hirsuta HOM05D006865 ORTHO05D009005 3.6e-36 156.4 312 46.5
BolC2t06470H Brassica oleracea HOM05D006865 ORTHO05D009005 4.6e-36 156.0 301 45.5
BcaB08g37044 Brassica carinata HOM05D006865 ORTHO05D009005 6.1e-36 155.6 312 44.6
Sp6g32050 Schrenkiella parvula HOM05D006865 ORTHO05D009005 7.9e-36 155.2 205 50.7
C02p05200 Brassica napus HOM05D006865 ORTHO05D009005 1.0e-35 154.8 301 45.2
Carub.0006s1002 Capsella rubella HOM05D006865 ORTHO05D009005 1.0e-35 154.8 208 52.4
AL6G22220 Arabidopsis lyrata HOM05D006865 ORTHO05D009005 1.4e-35 154.5 208 49.5
BcaC04g19215 Brassica carinata HOM05D006865 ORTHO05D009005 1.8e-35 154.1 208 49.5
A10p26220 Brassica napus HOM05D006865 ORTHO05D009005 1.8e-35 154.1 312 42.9
C09p65260 Brassica napus HOM05D006865 ORTHO05D009005 1.8e-35 154.1 208 49.5
BraA10t44679Z Brassica rapa HOM05D006865 ORTHO05D009005 1.8e-35 154.1 312 42.9
BcaC03g13374 Brassica carinata HOM05D006865 ORTHO05D009005 2.3e-35 153.7 301 44.9
Thhalv10014169m.g Eutrema salsugineum HOM05D006865 ORTHO05D009005 3.0e-35 153.3 315 46.0
A02p01060 Brassica napus HOM05D006865 ORTHO05D009005 1.1e-34 151.4 301 44.2
BraA02t05086Z Brassica rapa HOM05D006865 ORTHO05D009005 1.1e-34 151.4 301 44.2
EL10Ac2g04049 Beta vulgaris HOM05D006865 ORTHO05D009005 2.0e-34 150.6 210 48.6
BolC9t59354H Brassica oleracea HOM05D006865 ORTHO05D009005 2.6e-34 150.2 208 49.0
BcaNung01933 Brassica carinata HOM05D006865 ORTHO05D009005 3.3e-34 149.8 313 47.0
Actinidia31233 Actinidia chinensis HOM05D006865 ORTHO05D009005 7.4e-34 148.7 202 48.0
Aa31LG3G15650 Aethionema arabicum HOM05D006865 ORTHO05D009005 7.4e-34 148.7 201 51.2
MSTRG.14022 Avicennia marina HOM05D006865 ORTHO05D009005 9.7e-34 148.3 325 46.8
CDE02G3046 Ceratophyllum demersum HOM05D004680 ORTHO05D005939 1.3e-33 147.9 196 50.0
Nn3g18133 Nelumbo nucifera HOM05D006865 ORTHO05D009005 2.8e-33 146.7 133 60.9
Sc23g0005180 Simmondsia chinensis HOM05D006865 ORTHO05D009005 3.7e-33 146.4 203 46.8
Lsat_1_v5_gn_1_49660 Lactuca sativa HOM05D006865 ORTHO05D009005 8.2e-33 145.2 320 49.4
CDE08G1680 Ceratophyllum demersum HOM05D006865 ORTHO05D009005 1.1e-32 144.8 197 49.7
Migut.E01518 Erythranthe guttata HOM05D006865 ORTHO05D009005 3.1e-32 143.3 333 38.7
Cc08_g09210 Coffea canephora HOM05D006865 ORTHO05D009005 6.9e-32 142.1 204 54.4
HanXRQChr11g0351701 Helianthus annuus HOM05D006865 ORTHO05D009005 9.1e-32 141.7 325 46.5
Sopen11g028930 Solanum pennellii HOM05D006865 ORTHO05D009005 1.2e-31 141.4 187 49.7
Hma1.2p1_1163F.1_g262770 Hydrangea macrophylla HOM05D006865 ORTHO05D009005 1.5e-31 141.0 310 46.1
Thecc.09G042300 Theobroma cacao HOM05D006865 ORTHO05D009005 4.5e-31 139.4 208 51.9
PGSC0003DMG400018564 Solanum tuberosum HOM05D006865 ORTHO05D009005 5.9e-31 139.0 187 48.7
unitig_85.g27151 Utricularia gibba HOM05D006865 ORTHO05D009005 1.0e-30 138.3 200 46.5
CSS0046438 Camellia sinensis var. sinensis HOM05D006865 ORTHO05D009005 3.8e-30 136.3 187 49.2
Dinv30268 Davidia involucrata HOM05D006865 ORTHO05D009005 7.2e-29 132.1 185 48.1
ECA248G0081 Erigeron canadensis HOM05D006865 ORTHO05D009005 1.6e-28 131.0 239 41.0
BcaB01g05476 Brassica carinata HOM05D006865 ORTHO05D009005 3.6e-28 129.8 188 48.4
AUR62009307 Chenopodium quinoa HOM05D006865 ORTHO05D009005 4.7e-28 129.4 209 43.5
COL.COLO4_18674 Corchorus olitorius HOM05D003951 ORTHO05D005378 1.5e-26 124.4 210 45.7
SGA_v2.0_scaffold163G38079 Striga asiatica HOM05D006865 ORTHO05D009005 9.7e-26 121.7 311 40.8
Oeu031553.1 Olea europaea HOM05D006865 ORTHO05D009005 1.1e-24 118.2 184 45.1
Aqoxy7G03866 Aquilegia oxysepala HOM05D006865 ORTHO05D009005 2.2e-14 84.0 94 52.1
ATR0584G241 Amborella trichopoda HOM05D000271 ORTHO05D004758 1.0e-11 75.1 155 35.5
Nn2g10603 Nelumbo nucifera HOM05D006865 ORTHO05D009005 4.4e-10 69.7 70 54.3
Nn2g11491 Nelumbo nucifera HOM05D006865 ORTHO05D009005 7.5e-10 68.9 65 61.5
Zm00001eb295560 Zea mays HOM05D006865 ORTHO05D009005 6.3e-09 65.9 187 32.6
Pp3c13_7510 Physcomitrium patens HOM05D006865 ORTHO05D004758 1.1e-08 65.1 182 32.4
ECA236G3599 Erigeron canadensis HOM05D000271 ORTHO05D004758 1.4e-08 64.7 151 33.1
Ah.01g017840 Amaranthus hybridus HOM05D000271 ORTHO05D004758 2.4e-08 63.9 151 32.5
ECA234G4675 Erigeron canadensis HOM05D000271 ORTHO05D004758 2.4e-08 63.9 141 31.9
HanXRQChr10g0301971 Helianthus annuus HOM05D000271 ORTHO05D004758 2.4e-08 63.9 141 34.0
HPP92_023263 Vanilla planifolia HOM05D006865 ORTHO05D009005 2.4e-08 63.9 198 35.9
HPP92_023303 Vanilla planifolia HOM05D006865 ORTHO05D009005 2.4e-08 63.9 198 35.9
Cc02_g18930 Coffea canephora HOM05D000271 ORTHO05D004758 3.1e-08 63.5 141 34.8
Sc08g0001720 Simmondsia chinensis HOM05D000271 ORTHO05D004758 4.1e-08 63.2 141 34.0
HanXRQChr04g0128151 Helianthus annuus HOM05D000271 ORTHO05D004758 5.4e-08 62.8 141 32.6
unitig_60.g25455 Utricularia gibba HOM05D000271 ORTHO05D004758 7.0e-08 62.4 146 32.9
EL10Ac9g21579 Beta vulgaris HOM05D000271 ORTHO05D004758 9.1e-08 62.0 141 32.6
Os05g0559350 Oryza sativa ssp. japonica HOM05D006865 ORTHO05D009005 1.2e-07 61.6 152 34.9
Rhsim05G0086300 Rhododendron simsii HOM05D000271 ORTHO05D004758 1.2e-07 61.6 141 33.3
AUR62010239 Chenopodium quinoa HOM05D000271 ORTHO05D004758 1.6e-07 61.2 141 33.3
AUR62013222 Chenopodium quinoa HOM05D000271 ORTHO05D004758 1.6e-07 61.2 141 33.3
SEGI_20265 Sequoiadendron giganteum HOM05D006865 ORTHO05D004758 1.6e-07 61.2 154 37.7
Oeu013721.1 Olea europaea HOM05D000271 ORTHO05D004758 2.0e-07 60.8 150 30.7
Pp3c4_28800 Physcomitrium patens HOM05D006865 ORTHO05D009005 2.0e-07 60.8 145 32.4
Duzib132G0157 Durio zibethinus HOM05D000271 ORTHO05D004758 2.7e-07 60.5 150 31.3
BolC3t13095H Brassica oleracea HOM05D006865 ORTHO05D009005 3.5e-07 60.1 112 42.0
Gohir.D13G040100 Gossypium hirsutum HOM05D000271 ORTHO05D004758 3.5e-07 60.1 150 30.7
Gorai.013G045000 Gossypium raimondii HOM05D000271 ORTHO05D004758 3.5e-07 60.1 150 30.7
COL.COLO4_32637 Corchorus olitorius HOM05D000271 ORTHO05D004758 4.5e-07 59.7 150 31.3
MELO3C019521.2 Cucumis melo HOM05D000271 ORTHO05D004758 4.5e-07 59.7 141 32.6
Lsat_1_v5_gn_0_4301 Lactuca sativa HOM05D000271 ORTHO05D004758 4.5e-07 59.7 141 32.6
Sed0018393 Sechium edule HOM05D000271 ORTHO05D004758 4.5e-07 59.7 161 28.6
ClCG05G010100 Citrullus lanatus HOM05D000271 ORTHO05D004758 5.9e-07 59.3 141 31.9
CsaV3_3G018440 Cucumis sativus L. HOM05D000271 ORTHO05D004758 5.9e-07 59.3 141 31.9
Thecc.02G102700 Theobroma cacao HOM05D000271 ORTHO05D004758 5.9e-07 59.3 150 30.7
FAN02G1779 Fragaria x ananassa HOM05D006865 ORTHO05D009005 7.7e-07 58.9 190 32.6
FAN03G0792 Fragaria x ananassa HOM05D006865 ORTHO05D009005 7.7e-07 58.9 190 32.6
Glyma.02G102900 Glycine max HOM05D000271 ORTHO05D004758 7.7e-07 58.9 151 30.5
Glyma.07G214300 Glycine max HOM05D000271 ORTHO05D004758 7.7e-07 58.9 151 31.1
Pp3c19_3920 Physcomitrium patens HOM05D000271 ORTHO05D004758 7.7e-07 58.9 158 31.0
Aqoxy6G01278 Aquilegia oxysepala HOM05D000271 ORTHO05D004758 1.0e-06 58.5 141 31.9
CDE08G0542 Ceratophyllum demersum HOM05D000271 ORTHO05D004758 1.0e-06 58.5 155 31.6
Manes.07G072500 Manihot esculenta HOM05D000271 ORTHO05D004758 1.0e-06 58.5 141 31.9
Nn1g04802 Nelumbo nucifera HOM05D000271 ORTHO05D004758 1.0e-06 58.5 141 31.2
Zm00001eb343440 Zea mays HOM05D006865 ORTHO05D009005 1.0e-06 58.5 185 33.0
Atru.chr5.2665 Acer truncatum HOM05D000271 ORTHO05D004758 1.3e-06 58.2 150 32.7
FAN03G1515 Fragaria x ananassa HOM05D006865 ORTHO05D009005 1.3e-06 58.2 207 31.9
HanXRQChr16g0514951 Helianthus annuus HOM05D000271 ORTHO05D004758 1.3e-06 58.2 141 30.5
Pp3c26_12730 Physcomitrium patens HOM05D006865 ORTHO05D009005 1.3e-06 58.2 140 32.9
SGA_v2.0_scaffold90G27623 Striga asiatica HOM05D000271 ORTHO05D004758 1.3e-06 58.2 146 32.9
Carub.0003s1920 Capsella rubella HOM05D000271 ORTHO05D004758 1.7e-06 57.8 162 30.9
Dinv15729 Davidia involucrata HOM05D000271 ORTHO05D004758 2.3e-06 57.4 67 46.3
Nn5g30343 Nelumbo nucifera HOM05D000271 ORTHO05D004758 2.3e-06 57.4 141 31.2
Phvul.003G048200 Phaseolus vulgaris HOM05D000271 ORTHO05D004758 2.3e-06 57.4 151 30.5
CSS0008597 Camellia sinensis var. sinensis HOM05D000271 ORTHO05D004758 2.9e-06 57.0 154 31.2
Gohir.A13G041400 Gossypium hirsutum HOM05D000271 ORTHO05D004758 2.9e-06 57.0 150 30.0
Oeu044305.1 Olea europaea HOM05D000271 ORTHO05D004758 2.9e-06 57.0 141 31.2
Rhsim11G0164700 Rhododendron simsii HOM05D000271 ORTHO05D004758 2.9e-06 57.0 154 32.5
CiPaw.05G007900 Carya illinoinensis HOM05D000271 ORTHO05D004758 3.8e-06 56.6 141 31.2
Duzib052G0896 Durio zibethinus HOM05D000271 ORTHO05D004758 3.8e-06 56.6 150 29.3
Gohir.A03G188400 Gossypium hirsutum HOM05D000271 ORTHO05D004758 3.8e-06 56.6 150 29.3
Gohir.D02G209100 Gossypium hirsutum HOM05D000271 ORTHO05D004758 3.8e-06 56.6 150 29.3
Gorai.005G237200 Gossypium raimondii HOM05D000271 ORTHO05D004758 3.8e-06 56.6 150 29.3
Lsat_1_v5_gn_5_112261 Lactuca sativa HOM05D000271 ORTHO05D004758 3.8e-06 56.6 141 31.2
Lj4g0023837 Lotus japonicus HOM05D000271 ORTHO05D004758 3.8e-06 56.6 150 30.7
SalBow3G3087 Salvia bowleyana HOM05D000271 ORTHO05D004758 3.8e-06 56.6 141 31.2
TWI75G0658 Tripterygium wilfordii HOM05D000271 ORTHO05D004758 3.8e-06 56.6 141 31.9
TAR381G0434 Trochodendron aralioides HOM05D000271 ORTHO05D004758 3.8e-06 56.6 141 31.9
TAR625G1509 Trochodendron aralioides HOM05D000271 ORTHO05D004758 3.8e-06 56.6 67 46.3
AagrBONN_evm.TU.Sc2ySwM_228.4099 Anthoceros agrestis HOM05D000271 ORTHO05D004758 5.0e-06 56.2 137 32.8
BcaB04g17316 Brassica carinata HOM05D000271 ORTHO05D004758 6.5e-06 55.8 152 30.3
BcaC07g37026 Brassica carinata HOM05D000271 ORTHO05D004758 6.5e-06 55.8 152 30.3
A08p03770 Brassica napus HOM05D000271 ORTHO05D004758 6.5e-06 55.8 152 30.3
C08p03940 Brassica napus HOM05D000271 ORTHO05D004758 6.5e-06 55.8 152 30.3
BolC8t47187H Brassica oleracea HOM05D000271 ORTHO05D004758 6.5e-06 55.8 152 30.3
BraA08t32405Z Brassica rapa HOM05D000271 ORTHO05D004758 6.5e-06 55.8 152 30.3
Ciclev10028522m.g Citrus clementina HOM05D000271 ORTHO05D004758 6.5e-06 55.8 151 30.5
Hma1.2p1_0370F.1_g137660 Hydrangea macrophylla HOM05D000271 ORTHO05D004758 6.5e-06 55.8 141 31.2
MSTRG.5359 Avicennia marina HOM05D000271 ORTHO05D004758 8.6e-06 55.5 132 33.3
BcaB06g25989 Brassica carinata HOM05D000271 ORTHO05D004758 8.6e-06 55.5 142 34.5
Cpa.g.sc1383.1 Carica papaya HOM05D000271 ORTHO05D004758 8.6e-06 55.5 141 32.6
PSO170G6273 Papaver somniferum HOM05D000271 ORTHO05D004758 8.6e-06 55.5 141 31.2
SalBow6G4565 Salvia bowleyana HOM05D000271 ORTHO05D004758 8.6e-06 55.5 141 31.9


User provided reference genes

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