Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G13263 Trifolium pratense HOM05D002352 ORTHO05D014906 1.9e-96 355.9 191 100.0
TPR.G28591 Trifolium pratense HOM05D002352 ORTHO05D014906 4.4e-24 115.5 114 62.3
Lalb_Chr21g0313501 Lupinus albus HOM05D002352 ORTHO05D003724 5.9e-21 105.1 92 65.2
TPR.G28588 Trifolium pratense HOM05D002352 ORTHO05D014906 2.9e-20 102.8 94 62.8
Ca_10540_v3 Cicer arietinum L. HOM05D002352 ORTHO05D003724 5.0e-20 102.1 94 62.8
Lalb_Chr21g0313661 Lupinus albus HOM05D002352 ORTHO05D003724 5.0e-20 102.1 94 62.8
Medtr1g094165 Medicago truncatula HOM05D002352 ORTHO05D003724 5.0e-20 102.1 94 61.7
Phvul.007G099200 Phaseolus vulgaris HOM05D002352 ORTHO05D003724 5.0e-20 102.1 94 61.7
Glyma.10G207500 Glycine max HOM05D002352 ORTHO05D003724 8.5e-20 101.3 94 61.7
CiPaw.07G217200 Carya illinoinensis HOM05D002352 ORTHO05D003724 1.1e-19 100.9 113 54.0
MD01G1232200 Malus domestica HOM05D002352 ORTHO05D003724 1.1e-19 100.9 94 60.6
Duzib160G0039 Durio zibethinus HOM05D002352 ORTHO05D003724 1.9e-19 100.1 96 59.4
Glyma.20G183400 Glycine max HOM05D002352 ORTHO05D003724 1.9e-19 100.1 94 60.6
QL05p065250 Quercus lobata HOM05D002352 ORTHO05D003724 1.9e-19 100.1 111 54.1
RcHm_v2.0_Chr1g0383361 Rosa chinensis HOM05D002352 ORTHO05D003724 2.5e-19 99.8 113 53.1
Ah.14g089230 Amaranthus hybridus HOM05D002352 ORTHO05D003724 3.2e-19 99.4 111 53.2
COL.COLO4_22862 Corchorus olitorius HOM05D002352 ORTHO05D003724 3.2e-19 99.4 94 60.6
Lj5g0002534 Lotus japonicus HOM05D002352 ORTHO05D003724 3.2e-19 99.4 94 60.6
FvH4_7g33390 Fragaria vesca HOM05D002352 ORTHO05D003724 4.2e-19 99.0 111 53.2
FAN01G0441 Fragaria x ananassa HOM05D002352 ORTHO05D003724 4.2e-19 99.0 111 53.2
FAN10G0813 Fragaria x ananassa HOM05D002352 ORTHO05D003724 4.2e-19 99.0 111 53.2
FAN10G3833 Fragaria x ananassa HOM05D002352 ORTHO05D003724 4.2e-19 99.0 111 53.2
Gohir.D05G113700 Gossypium hirsutum HOM05D002352 ORTHO05D003724 5.5e-19 98.6 94 58.5
Gorai.009G117700 Gossypium raimondii HOM05D002352 ORTHO05D003724 5.5e-19 98.6 94 58.5
CiPaw.08G016100 Carya illinoinensis HOM05D002352 ORTHO05D003724 7.2e-19 98.2 95 58.9
Psat6g181080 Pisum sativum HOM05D002352 ORTHO05D003724 7.2e-19 98.2 94 59.6
Haze_05987 Corylus avellana HOM05D002352 ORTHO05D003724 9.4e-19 97.8 94 59.6
Gohir.A05G113200 Gossypium hirsutum HOM05D002352 ORTHO05D003724 9.4e-19 97.8 94 58.5
MD07G1304000 Malus domestica HOM05D002352 ORTHO05D003724 9.4e-19 97.8 94 58.5
TPR.G10297 Trifolium pratense HOM05D002352 ORTHO05D003724 9.4e-19 97.8 94 61.7
Zm00001eb369050 Zea mays HOM05D002352 ORTHO05D003724 9.4e-19 97.8 94 59.6
EL10Ac8g20329 Beta vulgaris HOM05D002352 ORTHO05D003724 1.2e-18 97.4 111 53.2
Dinv07525 Davidia involucrata HOM05D002352 ORTHO05D003724 1.2e-18 97.4 94 58.5
Lalb_Chr02g0152081 Lupinus albus HOM05D002352 ORTHO05D003724 1.2e-18 97.4 94 59.6
MBI19_g16739_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 1.6e-18 97.1 107 54.2
Medtr8g023010 Medicago truncatula HOM05D002352 ORTHO05D003724 1.6e-18 97.1 94 59.6
Sc17g0006350 Simmondsia chinensis HOM05D002352 ORTHO05D003724 1.6e-18 97.1 96 57.3
Cfa000747 Carpinus fangiana HOM05D002352 ORTHO05D003724 2.1e-18 96.7 94 58.5
Ah.09g235790 Amaranthus hybridus HOM05D002352 ORTHO05D003724 2.7e-18 96.3 94 57.4
AUR62014778 Chenopodium quinoa HOM05D002352 ORTHO05D003724 2.7e-18 96.3 102 56.9
AUR62016965 Chenopodium quinoa HOM05D002352 ORTHO05D003724 3.6e-18 95.9 102 56.9
Dinv40531 Davidia involucrata HOM05D002352 ORTHO05D003724 3.6e-18 95.9 182 37.9
FAN03G0871 Fragaria x ananassa HOM05D002352 ORTHO05D003724 3.6e-18 95.9 111 52.3
Prupe.1G083500 Prunus persica HOM05D002352 ORTHO05D003724 3.6e-18 95.9 111 51.4
Hund21252 Selenicereus undatus HOM05D002352 ORTHO05D003724 3.6e-18 95.9 94 58.5
Thecc.06G016700 Theobroma cacao HOM05D002352 ORTHO05D003724 3.6e-18 95.9 94 58.5
Zm00001eb149800 Zea mays HOM05D002352 ORTHO05D003724 3.6e-18 95.9 94 59.6
ATR1127G018 Amborella trichopoda HOM05D002352 ORTHO05D003724 4.7e-18 95.5 94 57.4
A03p19610 Brassica napus HOM05D002352 ORTHO05D003724 1.0e-17 94.4 112 53.6
C03p22870 Brassica napus HOM05D002352 ORTHO05D003724 1.0e-17 94.4 112 53.6
BraA03t11214Z Brassica rapa HOM05D002352 ORTHO05D003724 1.0e-17 94.4 112 53.6
TWI60G0805 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 1.0e-17 94.4 94 59.6
arahy.Tifrunner.gnm1.ann1.Q9T26T Arachis hypogaea HOM05D002352 ORTHO05D003724 1.4e-17 94.0 182 36.8
arahy.Tifrunner.gnm1.ann1.XI7UL2 Arachis hypogaea HOM05D002352 ORTHO05D003724 1.4e-17 94.0 182 36.8
Cpa.g.sc192.7 Carica papaya HOM05D002352 ORTHO05D003724 1.4e-17 94.0 108 51.9
Peaxi162Scf00524g00056 Petunia axillaris HOM05D002352 ORTHO05D003724 1.4e-17 94.0 163 41.7
Aqoxy1G02582 Aquilegia oxysepala HOM05D002352 ORTHO05D003724 1.8e-17 93.6 94 55.3
Lj6g0005213 Lotus japonicus HOM05D002352 ORTHO05D003724 1.8e-17 93.6 86 61.6
PGR004G1771 Punica granatum HOM05D002352 ORTHO05D003724 1.8e-17 93.6 203 34.0
Manes.16G062100 Manihot esculenta HOM05D002352 ORTHO05D003724 2.3e-17 93.2 188 38.3
Os01g0816400 Oryza sativa ssp. japonica HOM05D002352 ORTHO05D003724 2.3e-17 93.2 94 57.4
BcaB01g03895 Brassica carinata HOM05D002352 ORTHO05D003724 4.0e-17 92.4 94 58.5
Migut.M01176 Erythranthe guttata HOM05D002352 ORTHO05D003724 4.0e-17 92.4 94 55.3
TWI32G1048 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 4.0e-17 92.4 203 34.0
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 4.0e-17 92.4 94 57.4
HPP92_018014 Vanilla planifolia HOM05D002352 ORTHO05D003724 4.0e-17 92.4 111 49.5
HPP92_026673 Vanilla planifolia HOM05D002352 ORTHO05D003724 4.0e-17 92.4 111 49.5
CDE05G3196 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 5.2e-17 92.0 94 55.3
Lj2C285G5 Lonicera japonica HOM05D002352 ORTHO05D003724 6.7e-17 91.7 94 56.4
Solyc02g078640.3 Solanum lycopersicum HOM05D002352 ORTHO05D003724 6.7e-17 91.7 163 40.5
Sopen02g023500 Solanum pennellii HOM05D002352 ORTHO05D003724 6.7e-17 91.7 163 40.5
CAN.G1627.24 Capsicum annuum HOM05D002352 ORTHO05D003724 8.8e-17 91.3 94 56.4
ClCG01G025480 Citrullus lanatus HOM05D002352 ORTHO05D003724 8.8e-17 91.3 94 54.3
MELO3C007036.2 Cucumis melo HOM05D002352 ORTHO05D003724 8.8e-17 91.3 94 54.3
CsaV3_6G052730 Cucumis sativus L. HOM05D002352 ORTHO05D003724 8.8e-17 91.3 94 54.3
MBI19_g04166_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 8.8e-17 91.3 102 54.9
Oeu043712.2 Olea europaea HOM05D002352 ORTHO05D003724 8.8e-17 91.3 94 58.5
Potri.011G153700 Populus trichocarpa HOM05D002352 ORTHO05D003724 8.8e-17 91.3 188 37.2
Sabra11G0146000 Salix brachista HOM05D002352 ORTHO05D003724 8.8e-17 91.3 188 37.2
SEGI_02636 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 8.8e-17 91.3 102 52.0
BolC3t14686H Brassica oleracea HOM05D002352 ORTHO05D003724 1.2e-16 90.9 112 52.7
PSO541G4457 Papaver somniferum HOM05D002352 ORTHO05D003724 1.2e-16 90.9 94 55.3
Potri.001G443200 Populus trichocarpa HOM05D002352 ORTHO05D003724 1.2e-16 90.9 188 36.7
THA.LOC104798541 Tarenaya hassleriana HOM05D002352 ORTHO05D003724 1.2e-16 90.9 94 57.4
Sabra16G0299900 Salix brachista HOM05D002352 ORTHO05D003724 1.5e-16 90.5 188 36.2
Sabra16G0301500 Salix brachista HOM05D002352 ORTHO05D003724 1.5e-16 90.5 188 36.2
GSVIVG01006792001 Vitis vinifera HOM05D002352 ORTHO05D003724 2.0e-16 90.1 182 36.8
Eucgr.D00655 Eucalyptus grandis HOM05D002352 ORTHO05D003724 3.3e-16 89.4 94 55.3
SGA_v2.0_scaffold22G09771 Striga asiatica HOM05D002352 ORTHO05D003724 3.3e-16 89.4 94 55.3
Atru.chr10.646 Acer truncatum HOM05D002352 ORTHO05D003724 4.4e-16 89.0 182 35.2
CSS0019100 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D003724 5.7e-16 88.6 94 56.4
CDE05G2722 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 9.7e-16 87.8 94 53.2
Ciclev10014013m.g Citrus clementina HOM05D002352 ORTHO05D003724 9.7e-16 87.8 182 37.4
Sed0013080 Sechium edule HOM05D002352 ORTHO05D003724 9.7e-16 87.8 94 52.1
ECA236G2885 Erigeron canadensis HOM05D002352 ORTHO05D003724 2.2e-15 86.7 94 53.2
Cc02_g12860 Coffea canephora HOM05D002352 ORTHO05D003724 3.7e-15 85.9 94 53.2
SalBow8G3229 Salvia bowleyana HOM05D002352 ORTHO05D003724 6.3e-15 85.1 95 51.6
vmacro15889 Vaccinium macrocarpon HOM05D002352 ORTHO05D003724 6.3e-15 85.1 182 35.2
Thhalv10016124m.g Eutrema salsugineum HOM05D002352 ORTHO05D003724 8.2e-15 84.7 180 35.6
Nitab4.5_0003063g0010 Nicotiana tabacum HOM05D002352 ORTHO05D003724 8.2e-15 84.7 139 39.6
SEGI_16535 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 8.2e-15 84.7 94 50.0
AL4G31700 Arabidopsis lyrata HOM05D002352 ORTHO05D003724 1.1e-14 84.3 180 35.6
AT2G35630 Arabidopsis thaliana HOM05D002352 ORTHO05D003724 1.1e-14 84.3 180 35.6
CANSAT21G2414 Cannabis sativa HOM05D002352 ORTHO05D003724 1.1e-14 84.3 139 41.7
CARHR129850 Cardamine hirsuta HOM05D002352 ORTHO05D003724 1.1e-14 84.3 201 32.8
Nitab4.5_0009488g0020 Nicotiana tabacum HOM05D002352 ORTHO05D003724 1.1e-14 84.3 139 38.8
unitig_46.g18629 Utricularia gibba HOM05D002352 ORTHO05D003724 1.1e-14 84.3 95 50.5
arahy.Tifrunner.gnm1.ann1.52CC3C Arachis hypogaea HOM05D002352 ORTHO05D014906 1.4e-14 84.0 103 48.5
SMO230G0112 Selaginella moellendorffii HOM05D002352 ORTHO05D003724 1.4e-14 84.0 94 47.9
Actinidia07573 Actinidia chinensis HOM05D002352 ORTHO05D003724 2.4e-14 83.2 181 35.4
Sp4g17870 Schrenkiella parvula HOM05D002352 ORTHO05D003724 2.4e-14 83.2 180 35.6
Aa31LG9G15920 Aethionema arabicum HOM05D002352 ORTHO05D003724 4.1e-14 82.4 180 35.0
Rhsim02G0123500 Rhododendron simsii HOM05D002352 ORTHO05D003724 4.1e-14 82.4 182 35.7
Carub.0004s1734 Capsella rubella HOM05D002352 ORTHO05D003724 5.3e-14 82.0 179 35.2
DCAR_004114 Daucus carota HOM05D002352 ORTHO05D003724 5.3e-14 82.0 182 34.1
HanXRQChr04g0123991 Helianthus annuus HOM05D002352 ORTHO05D003724 5.3e-14 82.0 139 38.8
TPR.G113 Trifolium pratense HOM05D002352 ORTHO05D014906 1.2e-13 80.9 71 62.0
MSTRG.7313 Avicennia marina HOM05D002352 ORTHO05D003724 1.6e-13 80.5 139 36.7
Nn012s41459 Nelumbo nucifera HOM05D002352 ORTHO05D003724 1.6e-13 80.5 182 33.0
Nn1g06636 Nelumbo nucifera HOM05D002352 ORTHO05D003724 1.6e-13 80.5 182 33.0
unitig_37.g12343 Utricularia gibba HOM05D002352 ORTHO05D003724 4.5e-13 79.0 71 57.7
AagrBONN_evm.TU.Sc2ySwM_228.3370 Anthoceros agrestis HOM05D002352 ORTHO05D003724 5.9e-13 78.6 94 48.9
BcaB02g09406 Brassica carinata HOM05D002352 ORTHO05D003724 1.0e-12 77.8 180 33.9
BcaC02g11684 Brassica carinata HOM05D002352 ORTHO05D003724 1.0e-12 77.8 180 33.9
C04p12410 Brassica napus HOM05D002352 ORTHO05D003724 1.0e-12 77.8 180 33.9
BolC4t22889H Brassica oleracea HOM05D002352 ORTHO05D003724 1.0e-12 77.8 180 33.9
BraA05t19946Z Brassica rapa HOM05D002352 ORTHO05D003724 1.0e-12 77.8 180 33.9
Lsat_1_v5_gn_7_19361 Lactuca sativa HOM05D002352 ORTHO05D003724 6.5e-12 75.1 134 38.1
Pp3c9_24390 Physcomitrium patens HOM05D002352 ORTHO05D003724 8.5e-12 74.7 94 42.6
A05p10050 Brassica napus HOM05D002352 ORTHO05D003724 1.5e-11 73.9 182 32.4
CBR_g39205 Chara braunii HOM05D002352 ORTHO05D003724 5.5e-11 72.0 93 43.0
Pp3c15_23870 Physcomitrium patens HOM05D002352 ORTHO05D003724 2.7e-10 69.7 94 40.4
MD07G1271500 Malus domestica HOM05D002352 ORTHO05D014906 6.8e-09 65.1 36 80.6
Lsat_1_v5_gn_7_48800 Lactuca sativa HOM05D002352 ORTHO05D003724 8.8e-09 64.7 139 31.7
MD07G1271900 Malus domestica HOM05D002352 ORTHO05D003724 9.8e-08 61.2 37 75.7
TPR.G18787 Trifolium pratense HOM05D002352 ORTHO05D014906 9.8e-08 61.2 35 82.9
Rhsim07G0137600 Rhododendron simsii HOM05D002352 ORTHO05D003724 1.7e-07 60.5 96 42.7
HPP92_018074 Vanilla planifolia HOM05D002352 ORTHO05D003724 3.7e-07 59.3 32 84.4
Carub.0002s1370 Capsella rubella HOM05D002352 ORTHO05D014906 4.8e-07 58.9 87 47.1
SHI23474 Sapria himalayana HOM05D002352 ORTHO05D003724 4.8e-07 58.9 37 70.3
SGA_v2.0_scaffold100G29641 Striga asiatica HOM05D002352 ORTHO05D003724 8.3e-07 58.2 32 81.2
Lj1C1209G5 Lonicera japonica HOM05D002352 ORTHO05D003724 1.4e-06 57.4 32 84.4
Mapoly0009s0135 Marchantia polymorpha HOM05D002352 ORTHO05D003724 5.4e-06 55.5 92 34.8
TAR626G1549 Trochodendron aralioides HOM05D002352 ORTHO05D003724 9.1e-06 54.7 27 92.6


User provided reference genes

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