Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G13209 Trifolium pratense HOM05D006458 ORTHO05D008433 1.7e-34 148.7 69 100.0
Psat5g192520 Pisum sativum HOM05D006458 ORTHO05D008433 6.6e-15 83.6 53 77.4
Lj6g0005932 Lotus japonicus HOM05D006458 ORTHO05D008433 1.1e-14 82.8 51 82.4
Ca_14717_v3 Cicer arietinum L. HOM05D006458 ORTHO05D008433 1.5e-14 82.4 53 75.5
Medtr3g051110 Medicago truncatula HOM05D006458 ORTHO05D008433 1.5e-14 82.4 53 77.4
VMungo0540G0475 Vigna mungo HOM05D006458 ORTHO05D008433 9.6e-14 79.7 46 80.4
Phvul.005G120100 Phaseolus vulgaris HOM05D006458 ORTHO05D008433 2.1e-13 78.6 46 78.3
Glyma.08G314400 Glycine max HOM05D006458 ORTHO05D008433 2.8e-13 78.2 50 76.0
Glyma.18G099800 Glycine max HOM05D006458 ORTHO05D008433 1.1e-12 76.3 50 72.0
Phvul.006G040400 Phaseolus vulgaris HOM05D006458 ORTHO05D008433 2.4e-12 75.1 46 73.9
CANSAT11G2101 Cannabis sativa HOM05D006458 ORTHO05D008433 9.0e-12 73.2 56 58.9
arahy.Tifrunner.gnm1.ann1.717SVK Arachis hypogaea HOM05D006458 ORTHO05D008433 1.5e-11 72.4 42 76.2
TAR626G0847 Trochodendron aralioides HOM05D006458 ORTHO05D008433 1.5e-11 72.4 49 65.3
Ciclev10009738m.g Citrus clementina HOM05D006458 ORTHO05D008433 2.0e-11 72.0 55 61.8
Potri.011G137100 Populus trichocarpa HOM05D006458 ORTHO05D008433 2.0e-11 72.0 41 75.6
Sabra16G0288000 Salix brachista HOM05D006458 ORTHO05D008433 2.0e-11 72.0 39 79.5
FvH4_3g22360 Fragaria vesca HOM05D006458 ORTHO05D008433 3.4e-11 71.2 45 64.4
FAN11G3779 Fragaria x ananassa HOM05D006458 ORTHO05D008433 3.4e-11 71.2 45 64.4
Prupe.4G210000 Prunus persica HOM05D006458 ORTHO05D008433 3.4e-11 71.2 53 62.3
PSO541G1528 Papaver somniferum HOM05D006458 ORTHO05D008433 4.5e-11 70.9 44 68.2
PSO675G3423 Papaver somniferum HOM05D006458 ORTHO05D008433 4.5e-11 70.9 44 68.2
Cfa020375 Carpinus fangiana HOM05D006458 ORTHO05D008433 5.8e-11 70.5 52 65.4
Haze_09655 Corylus avellana HOM05D000653 ORTHO05D008581 5.8e-11 70.5 49 67.3
Hma1.2p1_0673F.1_g201190 Hydrangea macrophylla HOM05D006458 ORTHO05D008433 5.8e-11 70.5 49 69.4
RcHm_v2.0_Chr5g0038871 Rosa chinensis HOM05D006458 ORTHO05D008433 5.8e-11 70.5 50 62.0
arahy.Tifrunner.gnm1.ann1.JDXG8H Arachis hypogaea HOM05D006458 ORTHO05D008433 7.6e-11 70.1 42 73.8
CsaV3_3G005240 Cucumis sativus L. HOM05D006458 ORTHO05D008433 7.6e-11 70.1 51 56.9
Hma1.2p1_1271F.1_g271730 Hydrangea macrophylla HOM05D006458 ORTHO05D008433 7.6e-11 70.1 39 76.9
Sabra11G0123000 Salix brachista HOM05D006458 ORTHO05D008433 7.6e-11 70.1 52 63.5
vmacro09731 Vaccinium macrocarpon HOM05D006458 ORTHO05D008433 7.6e-11 70.1 45 68.9
FAN21G0544 Fragaria x ananassa HOM05D006458 ORTHO05D008433 9.9e-11 69.7 50 62.0
Dinv40738 Davidia involucrata HOM05D000653 ORTHO05D008581 1.3e-10 69.3 50 68.0
Lalb_Chr15g0081001 Lupinus albus HOM05D006458 ORTHO05D008433 1.3e-10 69.3 46 67.4
Actinidia05107 Actinidia chinensis HOM05D006458 ORTHO05D008433 1.7e-10 68.9 31 90.3
ClCG10G005510 Citrullus lanatus HOM05D006458 ORTHO05D008433 1.7e-10 68.9 51 56.9
Dinv22275 Davidia involucrata HOM05D006458 ORTHO05D008433 1.7e-10 68.9 47 68.1
Ah.04g165770 Amaranthus hybridus HOM05D006458 ORTHO05D008433 2.2e-10 68.6 40 72.5
Cpa.g.sc97.30 Carica papaya HOM05D006458 ORTHO05D008433 2.2e-10 68.6 44 70.5
Nitab4.5_0004336g0030 Nicotiana tabacum HOM05D006458 ORTHO05D008433 2.2e-10 68.6 51 64.7
CSS0025826 Camellia sinensis var. sinensis HOM05D006458 ORTHO05D008433 2.9e-10 68.2 42 66.7
CiPaw.12G128400 Carya illinoinensis HOM05D006458 ORTHO05D008433 2.9e-10 68.2 51 62.7
Manes.03G125000 Manihot esculenta HOM05D006458 ORTHO05D008433 2.9e-10 68.2 42 66.7
Hund02079 Selenicereus undatus HOM05D006458 ORTHO05D008433 2.9e-10 68.2 46 65.2
Aqoxy2G01543 Aquilegia oxysepala HOM05D006458 ORTHO05D008433 3.8e-10 67.8 52 59.6
BcaC04g20291 Brassica carinata HOM05D006458 ORTHO05D008433 3.8e-10 67.8 53 60.4
Migut.M01780 Erythranthe guttata HOM05D006458 ORTHO05D008433 3.8e-10 67.8 40 72.5
MD03G1206100 Malus domestica HOM05D006458 ORTHO05D008433 3.8e-10 67.8 48 62.5
MD11G1221600 Malus domestica HOM05D006458 ORTHO05D008433 3.8e-10 67.8 31 87.1
Nitab4.5_0000749g0130 Nicotiana tabacum HOM05D006458 ORTHO05D008433 3.8e-10 67.8 54 57.4
QL08p011516 Quercus lobata HOM05D006458 ORTHO05D008433 3.8e-10 67.8 55 58.2
SalBow5G1944 Salvia bowleyana HOM05D006458 ORTHO05D008433 4.9e-10 67.4 48 64.6
Sed0021211 Sechium edule HOM05D006458 ORTHO05D008433 4.9e-10 67.4 47 59.6
Atru.chr2.3388 Acer truncatum HOM05D006458 ORTHO05D008433 6.4e-10 67.0 54 59.3
COL.COLO4_09642 Corchorus olitorius HOM05D000451 ORTHO05D008433 6.4e-10 67.0 33 81.8
Gohir.A01G078500 Gossypium hirsutum HOM05D006458 ORTHO05D008433 6.4e-10 67.0 51 60.8
Nn1g03576 Nelumbo nucifera HOM05D006458 ORTHO05D008433 6.4e-10 67.0 49 61.2
RhsimUnG0251700 Rhododendron simsii HOM05D006458 ORTHO05D008433 6.4e-10 67.0 52 57.7
SalBow7G4274 Salvia bowleyana HOM05D006458 ORTHO05D008433 6.4e-10 67.0 41 68.3
HPP92_005293 Vanilla planifolia HOM05D006458 ORTHO05D008433 6.4e-10 67.0 40 72.5
CDE05G1373 Ceratophyllum demersum HOM05D006458 ORTHO05D008433 8.4e-10 66.6 45 62.2
Duzib170G0083 Durio zibethinus HOM05D006458 ORTHO05D008433 8.4e-10 66.6 40 70.0
Duzib170G1029 Durio zibethinus HOM05D006458 ORTHO05D008433 8.4e-10 66.6 40 70.0
Nitab4.5_0000653g0030 Nicotiana tabacum HOM05D006458 ORTHO05D008433 8.4e-10 66.6 54 55.6
Thecc.07G043100 Theobroma cacao HOM05D006458 ORTHO05D008433 8.4e-10 66.6 51 60.8
EL10Ac4g07850 Beta vulgaris HOM05D006458 ORTHO05D008433 1.1e-09 66.2 41 70.7
CAN.G416.46 Capsicum annuum HOM05D006458 ORTHO05D008433 1.1e-09 66.2 52 57.7
Cc05_g13560 Coffea canephora HOM05D006458 ORTHO05D008433 1.1e-09 66.2 41 68.3
Gohir.A13G138900 Gossypium hirsutum HOM05D006458 ORTHO05D008433 1.1e-09 66.2 40 70.0
Gohir.D13G143700 Gossypium hirsutum HOM05D006458 ORTHO05D008433 1.1e-09 66.2 40 70.0
Gorai.013G160500 Gossypium raimondii HOM05D006458 ORTHO05D008433 1.1e-09 66.2 40 70.0
PGR031G1917 Punica granatum HOM05D006458 ORTHO05D008433 1.1e-09 66.2 46 63.0
Nitab4.5_0001604g0080 Nicotiana tabacum HOM05D006458 ORTHO05D008433 1.4e-09 65.9 51 62.7
THA.LOC104817659 Tarenaya hassleriana HOM05D006458 ORTHO05D008433 1.4e-09 65.9 42 66.7
GSVIVG01037612001 Vitis vinifera HOM05D006458 ORTHO05D008433 1.4e-09 65.9 28 92.9
DCAR_010044 Daucus carota HOM05D006458 ORTHO05D008433 1.9e-09 65.5 38 65.8
Gohir.D01G065600 Gossypium hirsutum HOM05D006458 ORTHO05D008433 1.9e-09 65.5 40 65.0
Gorai.002G087500 Gossypium raimondii HOM05D006458 ORTHO05D008433 1.9e-09 65.5 40 65.0
MBI18_g24806_MAGBIO Magnolia biondii HOM05D006458 ORTHO05D008433 1.9e-09 65.5 39 74.4
BcaB08g35852 Brassica carinata HOM05D006458 ORTHO05D008433 2.4e-09 65.1 53 56.6
A10p12190 Brassica napus HOM05D006458 ORTHO05D008433 2.4e-09 65.1 53 58.5
BraA10t43315Z Brassica rapa HOM05D006458 ORTHO05D008433 2.4e-09 65.1 53 58.5
CARHR268190 Cardamine hirsuta HOM05D006458 ORTHO05D008433 2.4e-09 65.1 42 66.7
AUR62015736 Chenopodium quinoa HOM05D006458 ORTHO05D008433 2.4e-09 65.1 41 68.3
AUR62020475 Chenopodium quinoa HOM05D006458 ORTHO05D008433 2.4e-09 65.1 41 68.3
Peaxi162Scf00450g00732 Petunia axillaris HOM05D006458 ORTHO05D008433 2.4e-09 65.1 52 57.7
Thhalv10014954m.g Eutrema salsugineum HOM05D006458 ORTHO05D008433 3.2e-09 64.7 52 63.5
Sp6g16820 Schrenkiella parvula HOM05D006458 ORTHO05D008433 3.2e-09 64.7 53 56.6
SGA_v2.0_scaffold7G03986 Striga asiatica HOM05D006458 ORTHO05D008433 4.2e-09 64.3 38 65.8
CSS0035522 Camellia sinensis var. sinensis HOM05D006458 ORTHO05D008433 5.4e-09 63.9 42 64.3
HanXRQChr11g0336301 Helianthus annuus HOM05D006458 ORTHO05D008433 5.4e-09 63.9 46 60.9
Sc03g0008720 Simmondsia chinensis HOM05D006458 ORTHO05D008433 5.4e-09 63.9 31 83.9
AL8G30300 Arabidopsis lyrata HOM05D006458 ORTHO05D008433 7.1e-09 63.5 42 66.7
CSS0046732 Camellia sinensis var. sinensis HOM05D006458 ORTHO05D008433 7.1e-09 63.5 31 80.6
PGSC0003DMG400001097 Solanum tuberosum HOM05D006458 ORTHO05D008433 7.1e-09 63.5 52 59.6
Duzib170G0736 Durio zibethinus HOM05D006458 ORTHO05D008433 9.3e-09 63.2 38 68.4
AT5G54855 Arabidopsis thaliana HOM05D006458 ORTHO05D008433 1.2e-08 62.8 42 66.7
CDE02G3449 Ceratophyllum demersum HOM05D006458 ORTHO05D008433 1.2e-08 62.8 43 62.8
Solyc12g005150.2 Solanum lycopersicum HOM05D006458 ORTHO05D008433 1.2e-08 62.8 41 65.9
Zm00001eb178010 Zea mays HOM05D006458 ORTHO05D008433 1.2e-08 62.8 45 64.4
MSTRG.15157 Avicennia marina HOM05D006458 ORTHO05D008433 1.6e-08 62.4 52 53.8
Lsat_1_v5_gn_7_109420 Lactuca sativa HOM05D006458 ORTHO05D008433 1.6e-08 62.4 41 65.9
Lj1A870G91 Lonicera japonica HOM05D006458 ORTHO05D008433 1.6e-08 62.4 39 64.1
Os02g0317800 Oryza sativa ssp. japonica HOM05D006458 ORTHO05D008433 1.6e-08 62.4 41 63.4
Sopen12g001140 Solanum pennellii HOM05D006458 ORTHO05D008433 1.6e-08 62.4 52 57.7
Aa31LG3G10770 Aethionema arabicum HOM05D006458 ORTHO05D008433 2.1e-08 62.0 42 64.3
TWI39G1057 Tripterygium wilfordii HOM05D006458 ORTHO05D008433 2.7e-08 61.6 42 59.5
TAR629G1817 Trochodendron aralioides HOM05D006458 ORTHO05D008433 2.7e-08 61.6 49 57.1
C09p45410 Brassica napus HOM05D006458 ORTHO05D008433 3.5e-08 61.2 54 55.6
RcHm_v2.0_Chr5g0038891 Rosa chinensis HOM05D006458 ORTHO05D008433 4.6e-08 60.8 40 60.0
Carub.0008s1515 Capsella rubella HOM05D006458 ORTHO05D008433 6.0e-08 60.5 53 56.6
unitig_8.g4602 Utricularia gibba HOM05D006458 ORTHO05D008433 6.0e-08 60.5 41 58.5
ATR0752G141 Amborella trichopoda HOM05D006458 ORTHO05D008433 1.3e-07 59.3 44 61.4
ECA236G2465 Erigeron canadensis HOM05D000653 ORTHO05D008581 3.0e-07 58.2 42 54.8
A06p35450 Brassica napus HOM05D006458 ORTHO05D041657 6.7e-07 57.0 46 58.7
BraA06t26468Z Brassica rapa HOM05D006458 ORTHO05D041657 6.7e-07 57.0 46 58.7
SEGI_29279 Sequoiadendron giganteum HOM05D006458 ORTHO05D008433 1.9e-06 55.5 39 61.5


User provided reference genes

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